Wall clock time and date at job start Fri Apr 10 2020 17:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 112.84912 * 190.42005 * 3 2 1 5 5 C 1.52997 * 109.47341 * 50.32881 * 4 3 2 6 6 H 1.09001 * 109.47289 * 55.00475 * 5 4 3 7 7 O 1.42905 * 109.47264 * 295.00308 * 5 4 3 8 8 C 1.52997 * 109.47232 * 175.00399 * 5 4 3 9 9 N 1.46903 * 109.47311 * 185.00088 * 8 5 4 10 10 C 1.48537 * 111.00056 * 52.60212 * 9 8 5 11 11 C 1.54929 * 103.23048 * 159.72365 * 10 9 8 12 12 C 1.54598 * 102.92058 * 322.58852 * 11 10 9 13 13 O 1.42905 * 110.30513 * 263.04047 * 12 11 10 14 14 C 1.50699 * 110.31119 * 140.87611 * 12 11 10 15 15 H 1.08003 * 119.99347 * 244.27979 * 14 12 11 16 16 C 1.37872 * 120.00285 * 64.28056 * 14 12 11 17 17 N 1.31511 * 119.99970 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00063 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47375 * 59.99856 * 18 16 14 20 20 H 1.48493 * 109.47363 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47041 * 300.00080 * 18 16 14 22 22 C 1.47901 * 111.00343 * 169.99714 * 9 8 5 23 23 C 1.53785 * 113.61313 * 321.60916 * 3 2 1 24 24 C 1.53958 * 87.01789 * 89.23365 * 23 3 2 25 25 C 1.53778 * 113.61761 * 59.22068 * 3 2 1 26 26 H 1.09002 * 109.46818 * 290.32843 * 4 3 2 27 27 H 1.09004 * 109.47686 * 170.33066 * 4 3 2 28 28 H 0.96696 * 114.00036 * 299.99911 * 7 5 4 29 29 H 1.09000 * 109.47278 * 304.99661 * 8 5 4 30 30 H 1.08994 * 109.47510 * 65.00170 * 8 5 4 31 31 H 1.09008 * 110.66487 * 278.15787 * 10 9 8 32 32 H 1.09000 * 110.66527 * 41.28481 * 10 9 8 33 33 H 1.09001 * 110.72953 * 204.22761 * 11 10 9 34 34 H 1.09001 * 110.87931 * 81.01074 * 11 10 9 35 35 H 0.96702 * 113.99942 * 295.71143 * 13 12 11 36 36 H 0.96998 * 119.99772 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.91399 * 333.51087 * 22 9 8 38 38 H 1.08996 * 109.91421 * 94.60600 * 22 9 8 39 39 H 1.09004 * 113.61455 * 203.74696 * 23 3 2 40 40 H 1.08996 * 113.61801 * 334.65564 * 23 3 2 41 41 H 1.09002 * 113.53726 * 270.81167 * 24 23 3 42 42 H 1.09003 * 113.74456 * 139.94353 * 24 23 3 43 43 H 1.08996 * 113.61724 * 25.34845 * 25 3 2 44 44 H 1.08998 * 113.61444 * 156.25292 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2015 1.3876 0.2550 5 6 2.5507 2.0005 1.4967 6 1 2.6623 1.3184 2.3395 7 8 1.1617 2.2239 1.2454 8 6 3.2302 3.3315 1.8243 9 7 2.6880 3.8615 3.0826 10 6 2.7652 2.8469 4.1647 11 6 2.6708 3.6979 5.4559 12 6 3.4802 4.9646 5.0951 13 8 4.8173 4.8557 5.5877 14 6 2.8118 6.1912 5.6604 15 1 2.4187 6.9465 4.9960 16 6 2.7020 6.3492 7.0257 17 7 3.1803 5.4293 7.8346 18 14 1.8727 7.8694 7.7263 19 1 0.4699 7.9349 7.2437 20 1 1.8837 7.8000 9.2096 21 1 2.6059 9.0822 7.2826 22 6 3.4803 5.0171 3.5561 23 6 3.2245 -1.1035 0.8751 24 6 3.1740 -2.0072 -0.3704 25 6 3.2244 -0.7201 -1.2105 26 1 3.0132 2.0274 -0.6072 27 1 4.2762 1.2994 0.4142 28 1 0.9871 2.8229 0.5067 29 1 4.3039 3.1753 1.9287 30 1 3.0430 4.0428 1.0199 31 1 1.9284 2.1513 4.1003 32 1 3.7146 2.3130 4.1244 33 1 3.1268 3.1752 6.2967 34 1 1.6346 3.9528 5.6783 35 1 4.8794 4.8186 6.5520 36 1 3.1034 5.5406 8.7951 37 1 4.5015 4.9454 3.1821 38 1 3.0238 5.9457 3.2133 39 1 4.2369 -0.8798 1.2114 40 1 2.5726 -1.4353 1.6831 41 1 2.2387 -2.5579 -0.4709 42 1 4.0530 -2.6407 -0.4889 43 1 2.5724 -0.7428 -2.0837 44 1 4.2368 -0.3914 -1.4454 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:04 Heat of formation + Delta-G solvation = -48.926663 kcal Electronic energy + Delta-G solvation = -24370.373003 eV Core-core repulsion = 20902.358034 eV Total energy + Delta-G solvation = -3468.014969 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.33769 -38.61515 -36.89277 -35.66599 -34.51679 -32.04848 -31.69935 -29.86932 -28.13614 -26.81727 -26.12606 -24.58050 -23.28657 -22.03152 -21.23505 -19.99835 -19.31614 -17.08568 -17.06909 -16.34437 -15.93878 -15.34049 -14.96466 -14.83304 -14.70382 -14.44699 -14.17507 -13.83071 -13.50484 -13.30895 -12.83883 -12.80021 -12.54567 -12.21633 -12.07227 -11.98929 -11.63266 -11.57018 -11.44162 -11.20720 -11.15285 -10.94280 -10.86668 -10.69966 -10.56363 -10.49867 -10.43398 -10.27097 -9.97227 -9.59509 -9.11143 -8.55620 -8.08169 -7.73465 -6.17215 -4.23085 2.74631 2.87410 3.28144 3.32251 3.35898 3.71563 4.07333 4.19109 4.29260 4.35441 4.44516 4.58323 4.73402 4.92061 5.07923 5.10171 5.15109 5.30115 5.32947 5.40721 5.45783 5.54991 5.60278 5.66377 5.73054 5.78001 5.81068 5.93891 6.01536 6.09864 6.21754 6.28975 6.42193 6.54405 6.94871 7.09685 7.31645 7.55055 7.65724 7.69005 7.71954 7.82133 7.88136 8.18847 8.78015 9.43614 9.54484 10.90489 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031515 B = 0.003289 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.266483 B = 8510.747796 C = 8733.532050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.234 3.766 3 C 0.012 3.988 4 C -0.134 4.134 5 C 0.104 3.896 6 H 0.102 0.898 7 O -0.541 6.541 8 C 0.016 3.984 9 N -0.504 5.504 10 C 0.032 3.968 11 C -0.118 4.118 12 C 0.244 3.756 13 O -0.596 6.596 14 C -0.528 4.528 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.054 3.946 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.121 4.121 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.368 0.632 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.384 0.616 36 H 0.267 0.733 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.085 -12.266 -15.602 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.084 4.084 3 C 0.008 3.992 4 C -0.173 4.173 5 C 0.044 3.956 6 H 0.120 0.880 7 O -0.345 6.345 8 C -0.113 4.113 9 N -0.228 5.228 10 C -0.096 4.096 11 C -0.157 4.157 12 C 0.204 3.796 13 O -0.406 6.406 14 C -0.567 4.567 15 H 0.079 0.921 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.728 3.272 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.074 4.074 23 C -0.162 4.162 24 C -0.182 4.182 25 C -0.159 4.159 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.214 0.786 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.904 -12.537 -15.643 20.137 hybrid contribution 0.791 1.046 0.782 1.527 sum 2.696 -11.491 -14.861 18.978 Atomic orbital electron populations 1.81164 1.12428 1.08378 1.07765 1.27885 0.93703 0.93110 0.93659 1.19049 0.83000 0.96864 1.00243 1.22360 1.01229 0.93885 0.99838 1.22043 0.81759 0.95589 0.96194 0.88022 1.86685 1.22950 1.68966 1.55896 1.22976 0.96926 0.96230 0.95145 1.64818 1.49985 1.06419 1.01560 1.23289 0.98379 0.94832 0.93058 1.22967 1.01863 0.96843 0.93992 1.19332 0.80197 0.92402 0.87680 1.86071 1.29453 1.96833 1.28243 1.21667 1.37436 1.05699 0.91872 0.92071 1.25007 0.94801 0.96561 0.96982 1.69606 1.46750 1.33926 1.03812 0.86518 0.80051 0.82993 0.77637 1.20088 1.21225 1.20171 1.22891 0.94360 0.93439 0.96693 1.23103 1.01856 0.94115 0.97093 1.22934 1.02769 0.96525 0.95953 1.23023 1.01692 0.95405 0.95808 0.90457 0.88963 0.78559 0.94281 0.90992 0.91474 0.95131 0.91830 0.91443 0.76494 0.92312 0.94782 0.90493 0.88054 0.90520 0.90145 0.90446 0.90783 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.29 18.25 42.15 0.77 -5.52 16 2 C 0.23 2.78 11.59 -20.76 -0.24 2.54 16 3 C 0.01 0.10 0.94 -156.48 -0.15 -0.05 16 4 C -0.13 -1.06 4.50 -26.73 -0.12 -1.18 16 5 C 0.10 1.24 2.54 -26.73 -0.07 1.17 16 6 H 0.10 1.34 6.47 -51.93 -0.34 1.01 16 7 O -0.54 -7.59 10.61 -35.23 -0.37 -7.97 16 8 C 0.02 0.23 4.66 -3.82 -0.02 0.21 16 9 N -0.50 -9.60 5.34 -230.46 -1.23 -10.83 16 10 C 0.03 0.63 5.09 -1.90 -0.01 0.62 16 11 C -0.12 -2.79 5.49 -24.87 -0.14 -2.92 16 12 C 0.24 6.12 0.99 -90.42 -0.09 6.03 16 13 O -0.60 -15.56 12.93 -35.23 -0.46 -16.02 16 14 C -0.53 -14.42 8.10 -34.44 -0.28 -14.70 16 15 H 0.06 1.67 7.35 -52.48 -0.39 1.28 16 16 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 17 N -0.90 -24.32 10.88 55.43 0.60 -23.72 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.05 1.17 6.16 -2.76 -0.02 1.15 16 23 C -0.12 -0.87 7.15 -25.82 -0.18 -1.05 16 24 C -0.14 -0.86 7.80 -25.82 -0.20 -1.06 16 25 C -0.12 -0.69 7.21 -25.92 -0.19 -0.88 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.58 7.98 -51.93 -0.41 0.17 16 28 H 0.37 4.25 9.05 45.56 0.41 4.66 16 29 H 0.04 0.54 7.81 -51.93 -0.41 0.14 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.27 7.56 -51.92 -0.39 0.88 16 32 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 33 H 0.06 1.55 8.05 -51.93 -0.42 1.13 16 34 H 0.07 1.72 7.85 -51.93 -0.41 1.31 16 35 H 0.38 10.21 7.05 45.56 0.32 10.53 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.03 0.72 7.39 -51.93 -0.38 0.34 16 38 H 0.08 1.70 7.40 -51.93 -0.38 1.32 16 39 H 0.10 0.57 7.99 -51.93 -0.41 0.15 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.10 0.40 8.10 -51.93 -0.42 -0.02 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -30.96 351.46 -7.92 -38.88 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.71 Total: 12.23 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.79 Total: -8.39 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.14 Total: -40.07 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.83 Total: -23.98 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.96 -7.92 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.050 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds