Wall clock time and date at job start Fri Apr 10 2020 17:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00191 * 2 1 4 4 N 1.46905 * 109.47027 * 125.00771 * 3 2 1 5 5 C 1.46897 * 110.99384 * 288.77930 * 4 3 2 6 6 C 1.50707 * 109.46674 * 160.41927 * 5 4 3 7 7 H 1.08003 * 119.99837 * 359.19782 * 6 5 4 8 8 C 1.37877 * 119.99610 * 179.18987 * 6 5 4 9 9 N 1.31509 * 120.00405 * 0.02562 * 8 6 5 10 10 Si 1.86810 * 119.99583 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46835 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46477 * 120.00273 * 10 8 6 13 13 H 1.48492 * 109.46981 * 240.00330 * 10 8 6 14 14 C 1.46899 * 110.99651 * 164.83174 * 4 3 2 15 15 C 1.50696 * 109.47140 * 293.94843 * 14 4 3 16 16 C 1.35354 * 126.75545 * 95.25209 * 15 14 4 17 17 N 1.35305 * 106.17813 * 180.12365 * 16 15 14 18 18 C 1.46495 * 125.86865 * 179.90304 * 17 16 15 19 19 C 1.50698 * 109.47208 * 124.71414 * 18 17 16 20 20 O 1.20827 * 120.00303 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00146 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00339 * 180.02562 * 21 19 18 23 23 N 1.28715 * 108.26499 * 359.64287 * 17 16 15 24 24 N 1.28632 * 110.17936 * 0.22283 * 23 17 16 25 25 H 1.08001 * 119.99303 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00252 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99827 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47629 * 5.00421 * 3 2 1 29 29 H 1.09004 * 109.46903 * 245.00147 * 3 2 1 30 30 H 1.08993 * 109.47584 * 280.42390 * 5 4 3 31 31 H 1.09000 * 109.47201 * 40.43037 * 5 4 3 32 32 H 0.97003 * 119.99722 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46554 * 173.95291 * 14 4 3 34 34 H 1.08991 * 109.47694 * 53.95449 * 14 4 3 35 35 H 1.07998 * 126.90540 * 0.02562 * 16 15 14 36 36 H 1.09000 * 109.47200 * 4.71893 * 18 17 16 37 37 H 1.09005 * 109.47257 * 244.71759 * 18 17 16 38 38 H 1.08998 * 109.47216 * 59.99460 * 22 21 19 39 39 H 1.08995 * 109.47331 * 180.02562 * 22 21 19 40 40 H 1.09005 * 109.46366 * 299.99670 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9965 1.3318 1.1345 5 6 2.2747 1.4704 2.4063 6 6 3.1618 1.0214 3.5388 7 1 4.1572 0.6562 3.3329 8 6 2.7028 1.0771 4.8378 9 7 1.4907 1.5215 5.0884 10 14 3.8027 0.5212 6.2417 11 1 5.1085 0.0688 5.6980 12 1 4.0219 1.6538 7.1768 13 1 3.1522 -0.6001 6.9659 14 6 3.9901 2.4017 0.9737 15 6 4.8724 2.0944 -0.2088 16 6 4.7171 2.5476 -1.4747 17 7 5.7331 2.0158 -2.1928 18 6 5.9761 2.2261 -3.6221 19 6 7.3745 2.7509 -3.8220 20 8 8.0946 2.9304 -2.8685 21 8 7.8203 3.0190 -5.0594 22 6 9.1776 3.5211 -5.1768 23 7 6.4527 1.2979 -1.4031 24 7 5.9661 1.3240 -0.2127 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 1.9964 2.5138 2.5544 31 1 1.3757 0.8544 2.3830 32 1 1.1677 1.5603 6.0023 33 1 4.6003 2.4691 1.8744 34 1 3.4793 3.3503 0.8091 35 1 3.9378 3.2008 -1.8386 36 1 5.2580 2.9485 -4.0102 37 1 5.8634 1.2807 -4.1528 38 1 9.8728 2.7883 -4.7675 39 1 9.4106 3.6965 -6.2271 40 1 9.2681 4.4562 -4.6240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899868171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:23 Heat of formation + Delta-G solvation = 57.459178 kcal Electronic energy + Delta-G solvation = -23166.595175 eV Core-core repulsion = 19599.653098 eV Total energy + Delta-G solvation = -3566.942077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.15015 -40.83287 -37.28991 -36.98278 -34.73305 -33.16389 -32.50021 -30.88527 -29.88041 -27.59882 -27.27537 -26.36467 -23.80141 -22.84177 -21.71638 -21.07833 -20.20034 -19.13871 -18.34729 -17.69132 -17.05226 -16.66434 -16.33605 -15.79555 -15.19515 -14.75098 -14.47238 -14.33640 -14.26278 -13.90468 -13.75359 -13.31903 -12.94895 -12.64671 -12.57222 -12.05396 -11.70535 -11.40662 -11.29509 -11.27665 -11.08856 -11.05889 -10.62703 -10.54126 -10.49298 -10.37126 -10.01966 -9.83025 -9.21730 -9.01305 -8.72572 -8.34002 -7.26142 -5.94101 -3.94256 1.43093 1.63585 1.91721 2.49764 2.74067 2.91602 3.39267 3.46637 3.55010 4.01103 4.16224 4.44356 4.52666 4.56136 4.66357 4.75716 4.99208 5.08250 5.11749 5.34366 5.41951 5.55532 5.62155 5.69855 5.80105 5.95846 6.09424 6.20221 6.27680 6.43776 6.51158 6.63759 7.10476 7.18993 7.22106 7.27979 7.37782 7.92064 8.14081 8.21459 8.59285 8.75454 9.15772 9.70105 11.16424 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.003419 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.528258 B = 8187.109755 C = 9294.620514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C 0.076 3.924 4 N -0.525 5.525 5 C 0.194 3.806 6 C -0.502 4.502 7 H 0.067 0.933 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.142 3.858 15 C 0.017 3.983 16 C -0.058 4.058 17 N -0.301 5.301 18 C 0.133 3.867 19 C 0.446 3.554 20 O -0.470 6.470 21 O -0.357 6.357 22 C 0.037 3.963 23 N -0.070 5.070 24 N -0.238 5.238 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.029 0.971 29 H 0.065 0.935 30 H -0.006 1.006 31 H 0.037 0.963 32 H 0.259 0.741 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.189 0.811 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.267 5.198 -23.896 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.139 4.139 3 C -0.052 4.052 4 N -0.250 5.250 5 C 0.069 3.931 6 C -0.540 4.540 7 H 0.085 0.915 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.723 3.277 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.012 3.988 15 C -0.120 4.120 16 C -0.207 4.207 17 N -0.096 5.096 18 C 0.009 3.991 19 C 0.285 3.715 20 O -0.354 6.354 21 O -0.274 6.274 22 C -0.056 4.056 23 N -0.049 5.049 24 N -0.106 5.106 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.012 0.988 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.059 0.941 35 H 0.206 0.794 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.909 3.963 -23.334 24.955 hybrid contribution -0.716 1.245 0.577 1.548 sum 7.193 5.208 -22.757 24.429 Atomic orbital electron populations 1.23678 0.95935 1.01150 1.03651 1.22841 0.95316 0.98782 0.96953 1.21233 0.94356 0.94319 0.95261 1.62052 1.15136 1.44600 1.03195 1.19786 0.93979 0.95570 0.83720 1.21268 1.01071 1.41536 0.90170 0.91467 1.24969 0.95167 0.95618 0.98870 1.69970 1.16712 1.47505 1.19980 0.86479 0.81023 0.78183 0.82052 1.19427 1.21225 1.21166 1.20270 0.92502 0.92207 0.93788 1.22229 0.96390 0.98321 0.95068 1.23353 0.97247 1.07258 0.92871 1.46723 1.19886 1.34093 1.08937 1.21184 0.93342 1.06108 0.78460 1.23358 0.90035 0.76237 0.81893 1.90835 1.56730 1.46240 1.41593 1.86442 1.33703 1.76656 1.30571 1.23343 0.79003 0.99634 1.03624 1.78427 1.17252 1.13234 0.96014 1.75181 1.08798 1.16487 1.10174 0.89141 0.88974 0.87427 0.95311 0.91664 0.98833 0.94545 0.93132 0.87807 0.94098 0.79442 0.83617 0.84195 0.91463 0.87635 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.27 14.32 29.01 0.42 -2.85 16 2 C -0.12 -2.11 8.71 -36.03 -0.31 -2.42 16 3 C 0.08 1.34 5.28 -4.98 -0.03 1.32 16 4 N -0.53 -11.27 4.37 -238.97 -1.04 -12.32 16 5 C 0.19 5.00 4.59 -4.97 -0.02 4.98 16 6 C -0.50 -14.32 8.56 -34.44 -0.29 -14.61 16 7 H 0.07 1.96 7.79 -52.48 -0.41 1.55 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 10 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.14 2.75 5.35 -4.98 -0.03 2.72 16 15 C 0.02 0.30 6.02 -82.77 -0.50 -0.20 16 16 C -0.06 -0.76 10.15 -17.05 -0.17 -0.93 16 17 N -0.30 -3.87 3.20 -62.45 -0.20 -4.06 16 18 C 0.13 0.94 7.05 -5.20 -0.04 0.90 16 19 C 0.45 4.30 7.97 36.00 0.29 4.58 16 20 O -0.47 -6.76 15.43 -18.75 -0.29 -7.05 16 21 O -0.36 -2.67 10.57 -39.26 -0.41 -3.08 16 22 C 0.04 0.21 10.56 101.05 1.07 1.28 16 23 N -0.07 -1.23 12.13 60.35 0.73 -0.50 16 24 N -0.24 -4.79 12.41 33.29 0.41 -4.38 16 25 H 0.09 1.37 7.84 -52.49 -0.41 0.96 16 26 H 0.09 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.03 0.50 7.71 -51.93 -0.40 0.09 16 29 H 0.07 1.00 5.88 -51.93 -0.31 0.69 16 30 H -0.01 -0.17 8.00 -51.93 -0.42 -0.58 16 31 H 0.04 1.01 7.09 -51.93 -0.37 0.64 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.10 2.27 7.41 -51.93 -0.38 1.88 16 34 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.15 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 39 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -37.17 349.20 -5.17 -42.35 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.63 Total: -3.51 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 0.28 Total: -3.76 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.64 Total: -47.52 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.70 Total: -10.13 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.17 -5.17 -42.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899868171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.805 kcal (2) G-P(sol) polarization free energy of solvation -37.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds