Wall clock time and date at job start Fri Apr 10 2020 17:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00191 * 2 1 4 4 N 1.46905 * 109.47027 * 125.00771 * 3 2 1 5 5 C 1.46897 * 110.99384 * 288.77930 * 4 3 2 6 6 C 1.50707 * 109.46674 * 160.41927 * 5 4 3 7 7 H 1.08003 * 119.99837 * 359.19782 * 6 5 4 8 8 C 1.37877 * 119.99610 * 179.18987 * 6 5 4 9 9 N 1.31509 * 120.00405 * 0.02562 * 8 6 5 10 10 Si 1.86810 * 119.99583 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46835 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46477 * 120.00273 * 10 8 6 13 13 H 1.48492 * 109.46981 * 240.00330 * 10 8 6 14 14 C 1.46899 * 110.99651 * 164.83174 * 4 3 2 15 15 C 1.50696 * 109.47140 * 293.94843 * 14 4 3 16 16 C 1.35354 * 126.75545 * 95.25209 * 15 14 4 17 17 N 1.35305 * 106.17813 * 180.12365 * 16 15 14 18 18 C 1.46495 * 125.86865 * 179.90304 * 17 16 15 19 19 C 1.50698 * 109.47208 * 124.71414 * 18 17 16 20 20 O 1.20827 * 120.00303 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00146 * 180.02562 * 19 18 17 22 22 C 1.45202 * 117.00339 * 180.02562 * 21 19 18 23 23 N 1.28715 * 108.26499 * 359.64287 * 17 16 15 24 24 N 1.28632 * 110.17936 * 0.22283 * 23 17 16 25 25 H 1.08001 * 119.99303 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00252 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99827 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47629 * 5.00421 * 3 2 1 29 29 H 1.09004 * 109.46903 * 245.00147 * 3 2 1 30 30 H 1.08993 * 109.47584 * 280.42390 * 5 4 3 31 31 H 1.09000 * 109.47201 * 40.43037 * 5 4 3 32 32 H 0.97003 * 119.99722 * 179.97438 * 9 8 6 33 33 H 1.09002 * 109.46554 * 173.95291 * 14 4 3 34 34 H 1.08991 * 109.47694 * 53.95449 * 14 4 3 35 35 H 1.07998 * 126.90540 * 0.02562 * 16 15 14 36 36 H 1.09000 * 109.47200 * 4.71893 * 18 17 16 37 37 H 1.09005 * 109.47257 * 244.71759 * 18 17 16 38 38 H 1.08998 * 109.47216 * 59.99460 * 22 21 19 39 39 H 1.08995 * 109.47331 * 180.02562 * 22 21 19 40 40 H 1.09005 * 109.46366 * 299.99670 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9965 1.3318 1.1345 5 6 2.2747 1.4704 2.4063 6 6 3.1618 1.0214 3.5388 7 1 4.1572 0.6562 3.3329 8 6 2.7028 1.0771 4.8378 9 7 1.4907 1.5215 5.0884 10 14 3.8027 0.5212 6.2417 11 1 5.1085 0.0688 5.6980 12 1 4.0219 1.6538 7.1768 13 1 3.1522 -0.6001 6.9659 14 6 3.9901 2.4017 0.9737 15 6 4.8724 2.0944 -0.2088 16 6 4.7171 2.5476 -1.4747 17 7 5.7331 2.0158 -2.1928 18 6 5.9761 2.2261 -3.6221 19 6 7.3745 2.7509 -3.8220 20 8 8.0946 2.9304 -2.8685 21 8 7.8203 3.0190 -5.0594 22 6 9.1776 3.5211 -5.1768 23 7 6.4527 1.2979 -1.4031 24 7 5.9661 1.3240 -0.2127 25 1 -0.5399 0.9354 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3588 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 1.9964 2.5138 2.5544 31 1 1.3757 0.8544 2.3830 32 1 1.1677 1.5603 6.0023 33 1 4.6003 2.4691 1.8744 34 1 3.4793 3.3503 0.8091 35 1 3.9378 3.2008 -1.8386 36 1 5.2580 2.9485 -4.0102 37 1 5.8634 1.2807 -4.1528 38 1 9.8728 2.7883 -4.7675 39 1 9.4106 3.6965 -6.2271 40 1 9.2681 4.4562 -4.6240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899868171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:23 Heat of formation + Delta-G solvation = 29.719158 kcal Electronic energy + Delta-G solvation = -23167.798072 eV Core-core repulsion = 19599.653098 eV Total energy + Delta-G solvation = -3568.144974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.28355 -41.56663 -38.80734 -37.77569 -35.75077 -34.93798 -34.18531 -32.29222 -30.67554 -29.22861 -28.21805 -27.67163 -25.61318 -23.81068 -23.12350 -22.27824 -21.44220 -20.50232 -19.06966 -18.59744 -18.48326 -17.77602 -17.45605 -17.00746 -16.63913 -16.19620 -15.91671 -15.69662 -15.47450 -14.93470 -14.72125 -14.53775 -14.15614 -14.01346 -13.61088 -13.37901 -13.09612 -12.98916 -12.82605 -12.55748 -12.48819 -12.39372 -12.07606 -11.99724 -11.91354 -11.75085 -11.63076 -11.29381 -11.05491 -10.58474 -10.28755 -10.01759 -8.94321 -8.15501 -6.23212 0.48992 0.94112 1.09865 1.39932 1.40541 1.42476 1.56036 1.61440 1.79333 2.43938 3.16146 3.26187 3.52751 3.57004 3.71671 3.98783 4.03699 4.14770 4.23016 4.26364 4.28590 4.35162 4.46723 4.63206 4.68674 4.78586 4.79433 4.91861 5.11044 5.16500 5.18268 5.27335 5.35546 5.56717 5.70925 5.80196 5.92083 6.16870 6.40387 6.50591 6.70276 6.93065 7.45652 7.55888 8.94268 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019487 B = 0.003419 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.528258 B = 8187.109755 C = 9294.620514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C 0.081 3.919 4 N -0.541 5.541 5 C 0.214 3.786 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.273 1.273 12 H -0.276 1.276 13 H -0.277 1.277 14 C 0.150 3.850 15 C -0.018 4.018 16 C -0.020 4.020 17 N -0.288 5.288 18 C 0.124 3.876 19 C 0.449 3.551 20 O -0.528 6.528 21 O -0.348 6.348 22 C 0.031 3.969 23 N -0.100 5.100 24 N -0.295 5.295 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.093 0.907 30 H -0.027 1.027 31 H 0.015 0.985 32 H 0.263 0.737 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.243 0.757 36 H 0.204 0.796 37 H 0.174 0.826 38 H 0.056 0.944 39 H 0.140 0.860 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 5.934 -26.648 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.167 4.167 3 C -0.046 4.046 4 N -0.266 5.266 5 C 0.088 3.912 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.198 1.198 12 H -0.202 1.202 13 H -0.203 1.203 14 C 0.020 3.980 15 C -0.156 4.156 16 C -0.170 4.170 17 N -0.083 5.083 18 C 0.003 3.997 19 C 0.291 3.709 20 O -0.416 6.416 21 O -0.263 6.263 22 C -0.063 4.063 23 N -0.079 5.079 24 N -0.163 5.163 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.111 0.889 30 H -0.009 1.009 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.260 0.740 36 H 0.221 0.779 37 H 0.191 0.809 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.108 4.687 -26.152 27.503 hybrid contribution -0.456 1.059 1.240 1.694 sum 6.652 5.746 -24.911 26.417 Atomic orbital electron populations 1.23898 0.95440 1.02380 1.01042 1.22853 0.96036 0.98412 0.99375 1.21283 0.94086 0.94618 0.94650 1.61875 1.15922 1.46041 1.02734 1.19345 0.92952 0.93409 0.85508 1.21500 1.00774 1.41578 0.91707 0.93141 1.25733 0.96479 0.95636 1.01239 1.70057 1.18038 1.48308 1.20747 0.85508 0.79000 0.78122 0.79063 1.19784 1.20157 1.20268 1.20039 0.91887 0.92612 0.93443 1.22024 0.96627 1.00583 0.96397 1.23931 0.97092 1.05114 0.90892 1.47100 1.18634 1.31949 1.10658 1.21943 0.93005 1.09381 0.75335 1.23875 0.90583 0.74804 0.81645 1.90837 1.58453 1.48991 1.43311 1.86452 1.34445 1.76116 1.29276 1.23585 0.78007 0.98955 1.05704 1.78314 1.18483 1.15158 0.95977 1.75098 1.10509 1.18558 1.12098 0.88162 0.87460 0.88599 0.94505 0.88914 1.00935 0.96713 0.92766 0.91851 0.91809 0.74050 0.77916 0.80921 0.92487 0.84182 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.70 14.32 67.78 0.97 -4.73 16 2 C -0.15 -5.06 8.71 25.64 0.22 -4.83 16 3 C 0.08 2.73 5.28 85.55 0.45 3.18 16 4 N -0.54 -23.57 4.37 -909.96 -3.97 -27.55 16 5 C 0.21 11.37 4.59 85.56 0.39 11.77 16 6 C -0.52 -30.57 8.56 25.60 0.22 -30.35 16 7 H 0.05 3.09 7.79 -2.91 -0.02 3.07 16 8 C 0.01 0.41 5.46 84.66 0.46 0.88 16 9 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 10 Si 0.96 46.72 29.54 68.60 2.03 48.75 16 11 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 C 0.15 5.88 5.35 85.56 0.46 6.34 16 15 C -0.02 -0.62 6.02 41.59 0.25 -0.37 16 16 C -0.02 -0.45 10.15 83.49 0.85 0.40 16 17 N -0.29 -6.60 3.20 -351.48 -1.12 -7.73 16 18 C 0.12 1.21 7.05 85.63 0.60 1.82 16 19 C 0.45 7.64 7.97 71.24 0.57 8.20 16 20 O -0.53 -15.00 15.43 21.96 0.34 -14.67 16 21 O -0.35 -4.26 10.57 -51.41 -0.54 -4.80 16 22 C 0.03 0.30 10.56 113.37 1.20 1.49 16 23 N -0.10 -3.50 12.13 37.02 0.45 -3.05 16 24 N -0.30 -12.17 12.41 -48.60 -0.60 -12.77 16 25 H 0.10 2.80 7.84 -2.91 -0.02 2.78 16 26 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.10 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.04 1.19 7.71 -2.39 -0.02 1.17 16 29 H 0.09 2.57 5.88 -2.38 -0.01 2.55 16 30 H -0.03 -1.52 8.00 -2.39 -0.02 -1.54 16 31 H 0.01 0.84 7.09 -2.39 -0.02 0.82 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.06 2.95 7.41 -2.39 -0.02 2.93 16 34 H 0.06 2.15 8.12 -2.39 -0.02 2.13 16 35 H 0.24 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.20 -0.32 8.07 -2.39 -0.02 -0.33 16 37 H 0.17 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.06 0.68 8.13 -2.39 -0.02 0.67 16 39 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 Total: -1.00 -87.12 349.20 4.53 -82.59 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.03 Total: 1.68 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 6.64 Total: -6.20 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.97 Total: -107.35 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.20 Total: -19.47 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -87.12 4.53 -82.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899868171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.313 kcal (2) G-P(sol) polarization free energy of solvation -87.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds