Wall clock time and date at job start Fri Apr 10 2020 17:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34776 * 125.64906 * 204.09456 * 5 4 2 7 7 O 1.21278 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99804 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46891 * 179.97438 * 8 6 5 10 10 N 1.46495 * 109.47119 * 180.02562 * 9 8 6 11 11 C 1.34597 * 126.44215 * 124.71191 * 10 9 8 12 12 N 1.31072 * 106.68149 * 179.87370 * 11 10 9 13 13 N 1.28838 * 107.98925 * 0.39075 * 12 11 10 14 14 N 1.28737 * 109.39788 * 359.75052 * 13 12 11 15 15 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 16 16 C 1.54327 * 107.27336 * 358.94217 * 15 5 4 17 17 H 1.08993 * 110.72079 * 96.16743 * 16 15 5 18 18 N 1.46496 * 110.72108 * 219.44674 * 16 15 5 19 19 C 1.36943 * 119.99804 * 273.54304 * 18 16 15 20 20 H 1.07998 * 119.99804 * 359.97438 * 19 18 16 21 21 C 1.38807 * 119.99940 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00068 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99909 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47187 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47363 * 119.99534 * 23 21 19 26 26 H 1.48506 * 109.47119 * 239.99567 * 23 21 19 27 27 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 28 28 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 29 29 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 30 30 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 31 31 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 32 32 H 1.09002 * 109.47258 * 299.99966 * 8 6 5 33 33 H 1.08999 * 109.47362 * 60.00045 * 8 6 5 34 34 H 1.09002 * 109.47333 * 300.00155 * 9 8 6 35 35 H 1.08999 * 109.46889 * 59.99990 * 9 8 6 36 36 H 1.07998 * 126.65526 * 0.02562 * 11 10 9 37 37 H 1.08997 * 109.88723 * 239.52626 * 15 5 4 38 38 H 1.09000 * 110.01436 * 118.43179 * 15 5 4 39 39 H 0.96996 * 120.00232 * 93.54399 * 18 16 15 40 40 H 0.97004 * 119.99895 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4476 -1.5618 -1.5940 7 8 4.3008 -1.5000 -2.7963 8 6 5.7710 -1.9946 -1.0176 9 6 6.7486 -2.2962 -2.1554 10 7 8.0349 -2.7176 -1.5952 11 6 8.6902 -3.8609 -1.8692 12 7 9.7938 -3.8407 -1.1623 13 7 9.8111 -2.7462 -0.4829 14 7 8.7498 -2.0652 -0.7420 15 6 3.4674 -1.2742 0.6960 16 6 2.0861 -0.8079 1.2023 17 1 1.4467 -1.6631 1.4210 18 7 2.2286 0.0496 2.3814 19 6 2.3034 -0.5092 3.6294 20 1 2.2568 -1.5820 3.7443 21 6 2.4379 0.3034 4.7468 22 7 2.4941 1.6108 4.6067 23 14 2.5405 -0.4589 6.4491 24 1 2.4549 -1.9371 6.3355 25 1 3.8307 -0.0847 7.0821 26 1 1.4171 0.0390 7.2830 27 1 -0.3634 0.4521 0.9229 28 1 -0.3634 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0699 30 1 2.1559 -0.1721 -2.0837 31 1 1.4524 -1.6705 -1.4043 32 1 6.1740 -1.1969 -0.3937 33 1 5.6287 -2.8911 -0.4142 34 1 6.3454 -3.0942 -2.7790 35 1 6.8909 -1.4000 -2.7592 36 1 8.3702 -4.6420 -2.5429 37 1 4.2425 -0.5998 1.0600 38 1 3.6661 -2.2884 1.0424 39 1 2.2701 1.0132 2.2782 40 1 2.5885 2.1786 5.3875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939394814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:28 Heat of formation + Delta-G solvation = 96.729635 kcal Electronic energy + Delta-G solvation = -23296.215038 eV Core-core repulsion = 19763.268607 eV Total energy + Delta-G solvation = -3532.946431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.36740 -40.16393 -37.97128 -36.21548 -34.21811 -32.87032 -32.64570 -31.58159 -30.79015 -27.69900 -27.13128 -25.28847 -24.09639 -24.00352 -22.62628 -21.56723 -20.10664 -19.21420 -18.20055 -17.28096 -17.21012 -16.71884 -16.40893 -15.97379 -15.64782 -15.10229 -14.47589 -14.03999 -13.70857 -13.55373 -13.36302 -13.13485 -12.94173 -12.69851 -12.52157 -12.38637 -12.19439 -11.81913 -11.68452 -11.37193 -11.24052 -11.12574 -11.07965 -10.85508 -10.71465 -10.55505 -10.33225 -10.09346 -10.01570 -9.81690 -9.10239 -8.57265 -7.19383 -5.93371 -3.25113 1.03316 1.68550 2.06123 2.48127 2.97951 3.34358 3.40472 3.42761 3.90363 3.97854 4.22108 4.36218 4.47496 4.54384 4.78146 4.90462 5.00399 5.04375 5.11128 5.22845 5.35491 5.44414 5.50862 5.51504 5.61180 5.69011 5.77942 5.86554 5.89380 6.06129 6.12928 6.20266 6.32826 6.37124 6.49626 6.73676 7.51659 7.56536 8.00975 8.23680 8.40325 9.36179 9.88464 10.23018 11.28334 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.003972 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.627292 B = 7048.181326 C = 8952.608835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.535 3.465 7 O -0.558 6.558 8 C -0.154 4.154 9 C 0.132 3.868 10 N -0.308 5.308 11 C 0.159 3.841 12 N -0.310 5.310 13 N -0.077 5.077 14 N -0.087 5.087 15 C 0.067 3.933 16 C 0.178 3.822 17 H 0.067 0.933 18 N -0.711 5.711 19 C -0.253 4.253 20 H 0.073 0.927 21 C -0.005 4.005 22 N -0.927 5.927 23 Si 0.907 3.093 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.235 0.765 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.387 0.613 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -8.708 -15.431 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 H 0.103 0.897 4 C -0.009 4.009 5 N -0.338 5.338 6 C 0.322 3.678 7 O -0.438 6.438 8 C -0.195 4.195 9 C 0.011 3.989 10 N -0.110 5.110 11 C -0.140 4.140 12 N -0.159 5.159 13 N -0.071 5.071 14 N -0.074 5.074 15 C -0.059 4.059 16 C 0.065 3.935 17 H 0.085 0.915 18 N -0.351 5.351 19 C -0.383 4.383 20 H 0.091 0.909 21 C -0.202 4.202 22 N -0.574 5.574 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.222 0.778 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.282 -8.218 -14.987 17.404 hybrid contribution -0.601 -0.424 0.407 0.840 sum 2.682 -8.642 -14.579 17.159 Atomic orbital electron populations 1.21612 0.93708 1.01599 1.02237 1.22638 0.96467 0.99842 0.94430 0.89703 1.22310 0.82364 0.98254 0.97943 1.48506 1.12044 1.64902 1.08389 1.19681 0.84449 0.77614 0.86031 1.90702 1.83416 1.55269 1.14373 1.21863 0.93157 1.05566 0.98881 1.22007 0.76440 1.04788 0.95667 1.48850 1.18846 1.14257 1.29052 1.27758 0.90960 0.92434 1.02807 1.75004 1.17583 1.14951 1.08321 1.78678 1.12111 0.99103 1.17225 1.78944 1.01072 1.20871 1.06471 1.23479 1.03945 1.01480 0.76966 1.21230 0.91356 0.93913 0.86973 0.91523 1.42365 1.86875 1.05308 1.00535 1.19260 1.43599 0.91947 0.83529 0.90928 1.24764 1.02050 0.95338 0.98053 1.69663 1.56146 1.02334 1.29252 0.86140 0.77375 0.78255 0.84491 1.20458 1.21669 1.21702 0.91228 0.93089 0.92808 0.90751 0.91408 0.86674 0.87846 0.85938 0.86630 0.74926 0.90466 0.92103 0.77797 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.31 37.15 0.35 -1.35 16 2 C -0.11 -1.61 3.25 -88.47 -0.29 -1.90 16 3 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 4 C 0.11 1.47 6.37 -2.53 -0.02 1.45 16 5 N -0.61 -8.19 3.33 -170.52 -0.57 -8.75 16 6 C 0.53 6.73 7.85 -10.99 -0.09 6.64 16 7 O -0.56 -8.11 16.24 5.56 0.09 -8.02 16 8 C -0.15 -1.50 5.03 -27.88 -0.14 -1.64 16 9 C 0.13 1.01 5.77 -4.04 -0.02 0.98 16 10 N -0.31 -2.94 3.44 -62.55 -0.22 -3.16 16 11 C 0.16 1.32 12.79 -90.39 -1.16 0.16 16 12 N -0.31 -3.89 12.36 29.59 0.37 -3.52 16 13 N -0.08 -1.13 13.43 60.35 0.81 -0.32 16 14 N -0.09 -1.16 13.07 60.35 0.79 -0.37 16 15 C 0.07 1.02 6.24 -3.06 -0.02 1.00 16 16 C 0.18 3.01 3.06 -66.09 -0.20 2.81 16 17 H 0.07 1.14 8.02 -51.93 -0.42 0.73 16 18 N -0.71 -15.79 5.18 -51.65 -0.27 -16.06 16 19 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 22 N -0.93 -26.36 13.06 55.49 0.72 -25.63 16 23 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.07 0.95 8.04 -51.93 -0.42 0.54 16 31 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16 32 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.12 0.62 8.04 -51.93 -0.42 0.20 16 35 H 0.12 0.89 8.10 -51.93 -0.42 0.46 16 36 H 0.23 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.39 9.32 7.71 -40.82 -0.31 9.00 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -32.13 343.02 -5.69 -37.82 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.73 Total: 5.25 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.83 Total: 1.39 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: 1.64 Total: -57.81 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.13 -5.69 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939394814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.553 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds