Wall clock time and date at job start Fri Apr 10 2020 17:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34776 * 125.64906 * 204.09456 * 5 4 2 7 7 O 1.21278 * 119.99712 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99804 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46891 * 179.97438 * 8 6 5 10 10 N 1.46495 * 109.47119 * 180.02562 * 9 8 6 11 11 C 1.34597 * 126.44215 * 124.71191 * 10 9 8 12 12 N 1.31072 * 106.68149 * 179.87370 * 11 10 9 13 13 N 1.28838 * 107.98925 * 0.39075 * 12 11 10 14 14 N 1.28737 * 109.39788 * 359.75052 * 13 12 11 15 15 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 16 16 C 1.54327 * 107.27336 * 358.94217 * 15 5 4 17 17 H 1.08993 * 110.72079 * 96.16743 * 16 15 5 18 18 N 1.46496 * 110.72108 * 219.44674 * 16 15 5 19 19 C 1.36943 * 119.99804 * 273.54304 * 18 16 15 20 20 H 1.07998 * 119.99804 * 359.97438 * 19 18 16 21 21 C 1.38807 * 119.99940 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00068 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99909 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47187 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47363 * 119.99534 * 23 21 19 26 26 H 1.48506 * 109.47119 * 239.99567 * 23 21 19 27 27 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 28 28 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 29 29 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 30 30 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 31 31 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 32 32 H 1.09002 * 109.47258 * 299.99966 * 8 6 5 33 33 H 1.08999 * 109.47362 * 60.00045 * 8 6 5 34 34 H 1.09002 * 109.47333 * 300.00155 * 9 8 6 35 35 H 1.08999 * 109.46889 * 59.99990 * 9 8 6 36 36 H 1.07998 * 126.65526 * 0.02562 * 11 10 9 37 37 H 1.08997 * 109.88723 * 239.52626 * 15 5 4 38 38 H 1.09000 * 110.01436 * 118.43179 * 15 5 4 39 39 H 0.96996 * 120.00232 * 93.54399 * 18 16 15 40 40 H 0.97004 * 119.99895 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4476 -1.5618 -1.5940 7 8 4.3008 -1.5000 -2.7963 8 6 5.7710 -1.9946 -1.0176 9 6 6.7486 -2.2962 -2.1554 10 7 8.0349 -2.7176 -1.5952 11 6 8.6902 -3.8609 -1.8692 12 7 9.7938 -3.8407 -1.1623 13 7 9.8111 -2.7462 -0.4829 14 7 8.7498 -2.0652 -0.7420 15 6 3.4674 -1.2742 0.6960 16 6 2.0861 -0.8079 1.2023 17 1 1.4467 -1.6631 1.4210 18 7 2.2286 0.0496 2.3814 19 6 2.3034 -0.5092 3.6294 20 1 2.2568 -1.5820 3.7443 21 6 2.4379 0.3034 4.7468 22 7 2.4941 1.6108 4.6067 23 14 2.5405 -0.4589 6.4491 24 1 2.4549 -1.9371 6.3355 25 1 3.8307 -0.0847 7.0821 26 1 1.4171 0.0390 7.2830 27 1 -0.3634 0.4521 0.9229 28 1 -0.3634 0.5732 -0.8529 29 1 -0.3634 -1.0253 -0.0699 30 1 2.1559 -0.1721 -2.0837 31 1 1.4524 -1.6705 -1.4043 32 1 6.1740 -1.1969 -0.3937 33 1 5.6287 -2.8911 -0.4142 34 1 6.3454 -3.0942 -2.7790 35 1 6.8909 -1.4000 -2.7592 36 1 8.3702 -4.6420 -2.5429 37 1 4.2425 -0.5998 1.0600 38 1 3.6661 -2.2884 1.0424 39 1 2.2701 1.0132 2.2782 40 1 2.5885 2.1786 5.3875 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939394814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:27 Heat of formation + Delta-G solvation = 74.852625 kcal Electronic energy + Delta-G solvation = -23297.163696 eV Core-core repulsion = 19763.268607 eV Total energy + Delta-G solvation = -3533.895089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.18946 -41.25217 -39.14396 -37.04167 -35.86700 -34.06739 -33.53789 -32.69160 -32.22553 -29.15157 -28.08419 -26.26593 -25.79485 -24.80890 -23.54771 -22.80177 -21.38876 -20.24943 -19.09860 -18.99782 -18.07556 -17.72490 -17.45661 -16.79099 -16.66761 -16.50735 -15.77646 -15.36070 -15.15278 -14.68109 -14.51962 -14.28593 -14.07985 -13.77653 -13.55552 -13.44156 -13.16868 -13.01445 -12.88754 -12.85836 -12.58359 -12.22045 -12.20045 -12.11015 -12.02656 -11.89293 -11.68490 -11.41802 -11.38379 -11.09905 -10.92722 -9.69736 -9.06550 -7.95400 -5.24800 0.26519 0.99666 1.22221 1.46901 1.48580 1.50318 1.58488 1.96411 2.55981 3.22131 3.29250 3.37456 3.50575 3.55118 3.77377 3.79503 3.86271 3.88843 4.20053 4.24028 4.30511 4.36260 4.44927 4.47044 4.60146 4.63815 4.69819 4.79027 4.90034 4.90381 5.10031 5.14862 5.19636 5.24408 5.33820 5.49113 5.55771 6.25769 6.44081 6.97702 7.33828 7.55427 8.06082 8.28510 9.27681 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.003972 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.627292 B = 7048.181326 C = 8952.608835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 H 0.069 0.931 4 C 0.118 3.882 5 N -0.610 5.610 6 C 0.538 3.462 7 O -0.572 6.572 8 C -0.148 4.148 9 C 0.136 3.864 10 N -0.304 5.304 11 C 0.184 3.816 12 N -0.345 5.345 13 N -0.114 5.114 14 N -0.115 5.115 15 C 0.083 3.917 16 C 0.169 3.831 17 H 0.071 0.929 18 N -0.723 5.723 19 C -0.239 4.239 20 H 0.082 0.918 21 C -0.068 4.068 22 N -0.967 5.967 23 Si 0.964 3.036 24 H -0.264 1.264 25 H -0.299 1.299 26 H -0.296 1.296 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.116 0.884 36 H 0.291 0.709 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.375 0.625 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 -11.105 -17.423 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 H 0.087 0.913 4 C -0.004 4.004 5 N -0.343 5.343 6 C 0.327 3.673 7 O -0.453 6.453 8 C -0.189 4.189 9 C 0.015 3.985 10 N -0.106 5.106 11 C -0.113 4.113 12 N -0.193 5.193 13 N -0.108 5.108 14 N -0.102 5.102 15 C -0.043 4.043 16 C 0.059 3.941 17 H 0.089 0.911 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.261 4.261 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.188 1.188 25 H -0.227 1.227 26 H -0.223 1.223 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.177 0.823 35 H 0.134 0.866 36 H 0.306 0.694 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.207 0.793 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.653 -10.666 -17.026 20.265 hybrid contribution -0.469 0.264 0.863 1.017 sum 2.184 -10.402 -16.163 19.344 Atomic orbital electron populations 1.21569 0.92407 1.02739 1.01896 1.22544 0.97512 0.98808 0.93714 0.91260 1.22321 0.82274 0.98741 0.97059 1.48520 1.12767 1.65391 1.07576 1.20021 0.84795 0.76804 0.85647 1.90700 1.83733 1.55881 1.14980 1.21802 0.92008 1.05485 0.99560 1.22185 0.75118 1.06366 0.94787 1.48961 1.18987 1.14363 1.28332 1.28756 0.89039 0.92263 1.01279 1.74922 1.19913 1.14874 1.09628 1.78655 1.13152 1.00257 1.18736 1.78881 1.01497 1.21883 1.07973 1.23016 1.01677 1.01473 0.78106 1.21452 0.92576 0.93771 0.86315 0.91123 1.42497 1.87098 1.05260 1.01354 1.19646 1.40469 0.92282 0.84653 0.90060 1.25460 1.03603 0.95746 1.01296 1.69803 1.58886 1.03546 1.29456 0.85213 0.76380 0.78284 0.80709 1.18776 1.22652 1.22341 0.93697 0.90940 0.91268 0.90356 0.89550 0.88120 0.86648 0.82289 0.86633 0.69386 0.92591 0.90841 0.79272 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.31 71.98 0.67 -2.38 16 2 C -0.11 -2.87 3.25 -9.40 -0.03 -2.90 16 3 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 4 C 0.12 2.75 6.37 86.86 0.55 3.31 16 5 N -0.61 -15.21 3.33 -811.79 -2.70 -17.91 16 6 C 0.54 12.23 7.85 87.66 0.69 12.92 16 7 O -0.57 -14.98 16.24 -3.02 -0.05 -15.03 16 8 C -0.15 -2.55 5.03 29.85 0.15 -2.40 16 9 C 0.14 1.65 5.77 86.38 0.50 2.14 16 10 N -0.30 -5.11 3.44 -351.82 -1.21 -6.32 16 11 C 0.18 2.47 12.79 180.27 2.31 4.77 16 12 N -0.35 -8.20 12.36 -60.30 -0.75 -8.94 16 13 N -0.11 -3.33 13.43 37.01 0.50 -2.84 16 14 N -0.12 -3.00 13.07 37.02 0.48 -2.51 16 15 C 0.08 2.41 6.24 86.73 0.54 2.95 16 16 C 0.17 5.57 3.06 46.18 0.14 5.72 16 17 H 0.07 2.30 8.02 -2.39 -0.02 2.28 16 18 N -0.72 -32.35 5.18 -317.33 -1.64 -33.99 16 19 C -0.24 -12.03 9.98 84.03 0.84 -11.19 16 20 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 21 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 22 N -0.97 -56.47 13.06 21.65 0.28 -56.18 16 23 Si 0.96 44.01 29.55 68.60 2.03 46.03 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 31 H 0.09 1.74 7.99 -2.39 -0.02 1.72 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.16 0.82 8.04 -2.39 -0.02 0.80 16 35 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.29 -0.05 8.06 -2.91 -0.02 -0.07 16 37 H 0.06 1.88 8.03 -2.39 -0.02 1.86 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.37 18.54 7.71 -92.71 -0.72 17.82 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -71.80 343.02 4.11 -67.70 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.34 Total: 20.28 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.82 Total: 9.72 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.03 Total: -128.70 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.05 Total: -15.03 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.80 4.11 -67.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939394814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.551 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds