Wall clock time and date at job start Fri Apr 10 2020 17:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49826 * 2 1 4 4 C 1.53184 * 109.49931 * 120.09764 * 2 1 3 5 5 N 1.46923 * 108.77677 * 174.58863 * 4 2 1 6 6 C 1.36935 * 120.63189 * 126.36963 * 5 4 2 7 7 H 1.07997 * 120.00188 * 332.62935 * 6 5 4 8 8 C 1.38816 * 120.00022 * 152.63077 * 6 5 4 9 9 N 1.31618 * 120.00156 * 159.37264 * 8 6 5 10 10 Si 1.86801 * 119.99957 * 339.36798 * 8 6 5 11 11 H 1.48506 * 109.46796 * 92.93063 * 10 8 6 12 12 H 1.48499 * 109.47315 * 212.92873 * 10 8 6 13 13 H 1.48497 * 109.47227 * 332.93285 * 10 8 6 14 14 C 1.46933 * 118.73888 * 306.38824 * 5 4 2 15 15 C 1.53194 * 108.77070 * 53.60814 * 14 5 4 16 16 C 1.53035 * 109.31438 * 305.36788 * 15 14 5 17 17 H 1.09001 * 109.44629 * 181.38021 * 16 15 14 18 18 N 1.46502 * 109.45892 * 301.33904 * 16 15 14 19 19 C 1.34771 * 120.00331 * 275.07319 * 18 16 15 20 20 O 1.21535 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.48006 * 119.99707 * 179.97438 * 19 18 16 22 22 N 1.34183 * 126.70185 * 359.97438 * 21 19 18 23 23 N 1.28988 * 107.25595 * 179.97438 * 22 21 19 24 24 N 1.28718 * 108.98357 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.31792 * 179.97438 * 24 23 22 26 26 N 1.28874 * 109.36278 * 0.23936 * 24 23 22 27 27 H 1.09006 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47341 * 300.06331 * 1 2 3 29 29 H 1.09006 * 109.47437 * 60.06676 * 1 2 3 30 30 H 1.09005 * 109.58600 * 294.37339 * 4 2 1 31 31 H 1.09000 * 109.58988 * 54.79813 * 4 2 1 32 32 H 0.97001 * 120.00227 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.58843 * 173.39290 * 14 5 4 34 34 H 1.08992 * 109.58592 * 293.82614 * 14 5 4 35 35 H 1.08999 * 109.49604 * 185.40992 * 15 14 5 36 36 H 1.09003 * 109.49670 * 65.31754 * 15 14 5 37 37 H 0.97003 * 119.99176 * 95.07379 * 18 16 15 38 38 H 1.09005 * 109.47014 * 90.02346 * 25 24 23 39 39 H 1.08996 * 109.47174 * 330.02180 * 25 24 23 40 40 H 1.08999 * 109.47232 * 210.02009 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2493 5 7 3.5046 -0.8294 1.1693 6 6 4.2935 -0.3790 2.1939 7 1 3.9445 0.4175 2.8342 8 6 5.5420 -0.9463 2.4095 9 7 6.4552 -0.2880 3.0914 10 14 5.9260 -2.6443 1.7319 11 1 6.5609 -2.5121 0.3960 12 1 6.8543 -3.3469 2.6538 13 1 4.6681 -3.4236 1.6073 14 6 4.1053 -1.4266 -0.0313 15 6 3.5708 -0.6946 -1.2663 16 6 2.0408 -0.7227 -1.2485 17 1 1.6583 -0.2237 -2.1390 18 7 1.5783 -2.1127 -1.2315 19 6 1.4502 -2.7945 -2.3869 20 8 1.7188 -2.2564 -3.4431 21 6 0.9835 -4.1990 -2.3695 22 7 0.6534 -4.9210 -1.2878 23 7 0.3002 -6.0905 -1.7015 24 7 0.3961 -6.1274 -2.9846 25 6 0.0830 -7.2862 -3.8244 26 7 0.8160 -4.9873 -3.4146 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8894 29 1 -0.3634 0.5128 -0.8906 30 1 1.7638 -0.1585 2.1388 31 1 1.6053 -1.7220 1.2975 32 1 7.3277 -0.6842 3.2418 33 1 5.1895 -1.3245 0.0132 34 1 3.8375 -2.4817 -0.0875 35 1 3.9334 -1.1890 -2.1675 36 1 3.9158 0.3393 -1.2540 37 1 1.3643 -2.5422 -0.3885 38 1 -0.9670 -7.2512 -4.1150 39 1 0.2751 -8.2023 -3.2658 40 1 0.7079 -7.2674 -4.7173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942562883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:32 Heat of formation + Delta-G solvation = 125.223524 kcal Electronic energy + Delta-G solvation = -24479.264075 eV Core-core repulsion = 20947.553232 eV Total energy + Delta-G solvation = -3531.710843 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.61558 -40.08504 -37.92275 -35.49860 -34.49049 -33.37816 -32.68197 -31.57129 -30.51570 -29.04242 -26.45419 -25.76898 -24.78723 -23.27512 -22.14889 -21.53773 -21.15423 -18.90739 -18.66831 -17.84985 -17.14510 -16.67882 -15.86482 -15.23646 -15.05650 -14.42685 -14.37649 -14.26756 -13.93002 -13.70200 -13.57519 -13.46152 -13.40214 -12.52986 -12.37982 -12.26586 -11.76021 -11.63339 -11.52400 -11.35793 -11.33475 -11.29157 -10.67494 -10.60687 -10.53452 -10.29903 -10.18659 -9.98273 -9.68989 -9.48541 -8.93204 -8.57515 -6.97107 -5.94271 -3.30242 0.77431 1.30128 1.49781 2.80890 3.07636 3.34436 3.50483 3.53769 3.82743 3.96425 4.39899 4.54426 4.60602 4.71091 4.92006 4.96995 5.07916 5.22488 5.32640 5.37850 5.43976 5.65774 5.70469 5.85042 5.87397 5.95830 6.03603 6.14755 6.24149 6.35217 6.39043 6.58184 6.62786 6.68615 6.70163 6.91704 7.43952 7.92793 7.96084 8.10387 8.33238 8.94052 9.72802 10.09676 11.21604 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.005024 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.547017 B = 5571.755213 C = 6407.196624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 H 0.091 0.909 4 C 0.152 3.848 5 N -0.605 5.605 6 C -0.260 4.260 7 H 0.087 0.913 8 C 0.026 3.974 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.127 3.873 15 C -0.148 4.148 16 C 0.160 3.840 17 H 0.085 0.915 18 N -0.689 5.689 19 C 0.614 3.386 20 O -0.514 6.514 21 C 0.133 3.867 22 N -0.250 5.250 23 N -0.056 5.056 24 N -0.138 5.138 25 C 0.093 3.907 26 N -0.250 5.250 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.262 0.738 33 H 0.073 0.927 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 -10.580 -13.032 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 H 0.109 0.891 4 C 0.026 3.974 5 N -0.328 5.328 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.173 4.173 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.218 1.218 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.001 3.999 15 C -0.188 4.188 16 C 0.057 3.943 17 H 0.103 0.897 18 N -0.342 5.342 19 C 0.393 3.607 20 O -0.386 6.386 21 C -0.151 4.151 22 N -0.125 5.125 23 N -0.050 5.050 24 N -0.051 5.051 25 C -0.047 4.047 26 N -0.104 5.104 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.753 -10.734 -13.470 22.678 hybrid contribution 0.449 -1.039 -0.226 1.154 sum -14.304 -11.773 -13.696 23.039 Atomic orbital electron populations 1.21785 0.95283 1.01598 1.01526 1.21957 0.95018 1.01062 0.95916 0.89093 1.20972 0.84512 0.96733 0.95216 1.44358 1.00621 1.71928 1.15889 1.18909 0.97819 1.13970 1.08098 0.89566 1.25247 0.96432 0.97922 0.97711 1.69831 1.04420 1.37038 1.43775 0.87005 0.77781 0.87191 0.76988 1.21769 1.23189 1.19482 1.21305 0.98145 0.94594 0.85854 1.22427 0.94269 1.02697 0.99409 1.21087 0.94829 0.79294 0.99138 0.89674 1.45934 1.65521 1.14452 1.08289 1.16092 0.78484 0.81035 0.85073 1.90832 1.49763 1.67514 1.30493 1.25452 1.05190 0.99079 0.85378 1.76186 1.13852 0.97347 1.25083 1.78949 1.16240 1.15580 0.94220 1.50269 1.38759 1.10632 1.05407 1.22538 1.04605 0.82737 0.94803 1.75082 1.15677 0.93201 1.26411 0.92942 0.92305 0.93018 0.91271 0.96110 0.92776 0.90902 0.95794 0.92051 0.90233 0.75083 0.87655 0.86589 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.05 37.16 0.34 -1.43 16 2 C -0.12 -1.80 2.67 -90.51 -0.24 -2.04 16 3 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.15 2.80 5.50 -3.72 -0.02 2.78 16 5 N -0.60 -13.91 2.77 -172.32 -0.48 -14.38 16 6 C -0.26 -7.13 10.04 -15.06 -0.15 -7.28 16 7 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 8 C 0.03 0.75 5.23 -17.43 -0.09 0.65 16 9 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 10 Si 0.88 22.73 24.35 -169.99 -4.14 18.59 16 11 H -0.29 -7.33 6.62 56.52 0.37 -6.96 16 12 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 13 H -0.27 -6.87 6.63 56.52 0.38 -6.50 16 14 C 0.13 2.78 3.94 -3.71 -0.01 2.76 16 15 C -0.15 -2.70 5.77 -26.61 -0.15 -2.86 16 16 C 0.16 2.54 2.21 -67.89 -0.15 2.39 16 17 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 18 N -0.69 -10.81 3.59 -54.66 -0.20 -11.01 16 19 C 0.61 10.15 7.80 -12.26 -0.10 10.05 16 20 O -0.51 -9.59 16.76 5.33 0.09 -9.50 16 21 C 0.13 2.06 8.14 -156.25 -1.27 0.79 16 22 N -0.25 -3.78 12.26 32.10 0.39 -3.38 16 23 N -0.06 -0.72 13.23 60.35 0.80 0.08 16 24 N -0.14 -1.47 4.39 -16.64 -0.07 -1.54 16 25 C 0.09 0.35 11.62 59.85 0.70 1.05 16 26 N -0.25 -3.46 12.17 32.11 0.39 -3.07 16 27 H 0.05 0.63 7.53 -51.93 -0.39 0.24 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 31 H 0.02 0.37 6.64 -51.93 -0.34 0.03 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.07 1.78 4.49 -51.93 -0.23 1.55 16 34 H 0.02 0.54 6.67 -51.93 -0.35 0.19 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.41 6.36 6.48 -40.82 -0.26 6.10 16 38 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -34.70 324.66 -4.08 -38.78 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.38 Total: 0.72 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.16 Total: 6.86 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 1.61 Total: -60.34 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.70 -4.08 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942562883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.006 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds