Wall clock time and date at job start Fri Apr 10 2020 17:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49826 * 2 1 4 4 C 1.53184 * 109.49931 * 120.09764 * 2 1 3 5 5 N 1.46923 * 108.77677 * 174.58863 * 4 2 1 6 6 C 1.36935 * 120.63189 * 126.36963 * 5 4 2 7 7 H 1.07997 * 120.00188 * 332.62935 * 6 5 4 8 8 C 1.38816 * 120.00022 * 152.63077 * 6 5 4 9 9 N 1.31618 * 120.00156 * 159.37264 * 8 6 5 10 10 Si 1.86801 * 119.99957 * 339.36798 * 8 6 5 11 11 H 1.48506 * 109.46796 * 92.93063 * 10 8 6 12 12 H 1.48499 * 109.47315 * 212.92873 * 10 8 6 13 13 H 1.48497 * 109.47227 * 332.93285 * 10 8 6 14 14 C 1.46933 * 118.73888 * 306.38824 * 5 4 2 15 15 C 1.53194 * 108.77070 * 53.60814 * 14 5 4 16 16 C 1.53035 * 109.31438 * 305.36788 * 15 14 5 17 17 H 1.09001 * 109.44629 * 181.38021 * 16 15 14 18 18 N 1.46502 * 109.45892 * 301.33904 * 16 15 14 19 19 C 1.34771 * 120.00331 * 275.07319 * 18 16 15 20 20 O 1.21535 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.48006 * 119.99707 * 179.97438 * 19 18 16 22 22 N 1.34183 * 126.70185 * 359.97438 * 21 19 18 23 23 N 1.28988 * 107.25595 * 179.97438 * 22 21 19 24 24 N 1.28718 * 108.98357 * 0.02562 * 23 22 21 25 25 C 1.46505 * 125.31792 * 179.97438 * 24 23 22 26 26 N 1.28874 * 109.36278 * 0.23936 * 24 23 22 27 27 H 1.09006 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47341 * 300.06331 * 1 2 3 29 29 H 1.09006 * 109.47437 * 60.06676 * 1 2 3 30 30 H 1.09005 * 109.58600 * 294.37339 * 4 2 1 31 31 H 1.09000 * 109.58988 * 54.79813 * 4 2 1 32 32 H 0.97001 * 120.00227 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.58843 * 173.39290 * 14 5 4 34 34 H 1.08992 * 109.58592 * 293.82614 * 14 5 4 35 35 H 1.08999 * 109.49604 * 185.40992 * 15 14 5 36 36 H 1.09003 * 109.49670 * 65.31754 * 15 14 5 37 37 H 0.97003 * 119.99176 * 95.07379 * 18 16 15 38 38 H 1.09005 * 109.47014 * 90.02346 * 25 24 23 39 39 H 1.08996 * 109.47174 * 330.02180 * 25 24 23 40 40 H 1.08999 * 109.47232 * 210.02009 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2493 5 7 3.5046 -0.8294 1.1693 6 6 4.2935 -0.3790 2.1939 7 1 3.9445 0.4175 2.8342 8 6 5.5420 -0.9463 2.4095 9 7 6.4552 -0.2880 3.0914 10 14 5.9260 -2.6443 1.7319 11 1 6.5609 -2.5121 0.3960 12 1 6.8543 -3.3469 2.6538 13 1 4.6681 -3.4236 1.6073 14 6 4.1053 -1.4266 -0.0313 15 6 3.5708 -0.6946 -1.2663 16 6 2.0408 -0.7227 -1.2485 17 1 1.6583 -0.2237 -2.1390 18 7 1.5783 -2.1127 -1.2315 19 6 1.4502 -2.7945 -2.3869 20 8 1.7188 -2.2564 -3.4431 21 6 0.9835 -4.1990 -2.3695 22 7 0.6534 -4.9210 -1.2878 23 7 0.3002 -6.0905 -1.7015 24 7 0.3961 -6.1274 -2.9846 25 6 0.0830 -7.2862 -3.8244 26 7 0.8160 -4.9873 -3.4146 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8894 29 1 -0.3634 0.5128 -0.8906 30 1 1.7638 -0.1585 2.1388 31 1 1.6053 -1.7220 1.2975 32 1 7.3277 -0.6842 3.2418 33 1 5.1895 -1.3245 0.0132 34 1 3.8375 -2.4817 -0.0875 35 1 3.9334 -1.1890 -2.1675 36 1 3.9158 0.3393 -1.2540 37 1 1.3643 -2.5422 -0.3885 38 1 -0.9670 -7.2512 -4.1150 39 1 0.2751 -8.2023 -3.2658 40 1 0.7079 -7.2674 -4.7173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942562883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:32 Heat of formation + Delta-G solvation = 98.653745 kcal Electronic energy + Delta-G solvation = -24480.416227 eV Core-core repulsion = 20947.553232 eV Total energy + Delta-G solvation = -3532.862995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.58774 -41.41633 -39.37422 -36.39474 -36.13265 -34.39096 -34.10236 -33.38102 -32.10003 -29.75991 -27.79406 -27.32690 -26.15499 -24.20054 -23.61621 -23.20958 -22.36493 -20.33973 -19.74563 -18.76878 -18.75552 -17.91784 -17.38402 -16.90736 -16.46214 -15.95845 -15.69013 -15.35524 -15.20915 -15.13000 -14.87192 -14.31778 -14.20851 -14.15202 -13.90637 -13.46933 -13.23011 -13.18750 -12.92369 -12.79716 -12.38772 -12.28765 -12.28000 -12.09651 -11.94253 -11.69850 -11.58918 -11.51646 -11.44988 -11.26106 -10.72602 -10.21270 -8.91711 -8.16560 -5.46859 -0.21400 0.21160 0.78473 1.27009 1.38256 1.46130 1.71300 1.86484 2.40139 2.76494 3.02686 3.05854 3.33853 3.69269 3.89455 3.95340 4.03044 4.07817 4.21741 4.22359 4.41443 4.47958 4.54194 4.58035 4.60202 4.74040 4.86215 4.88786 4.94490 4.95078 5.02605 5.13342 5.22712 5.31558 5.35912 5.54717 5.87742 6.14023 6.20145 6.79023 6.91676 6.98609 7.62798 8.03621 9.03311 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.005024 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.547017 B = 5571.755213 C = 6407.196624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 H 0.088 0.912 4 C 0.147 3.853 5 N -0.616 5.616 6 C -0.241 4.241 7 H 0.062 0.938 8 C -0.029 4.029 9 N -0.955 5.955 10 Si 0.936 3.064 11 H -0.285 1.285 12 H -0.311 1.311 13 H -0.263 1.263 14 C 0.126 3.874 15 C -0.140 4.140 16 C 0.165 3.835 17 H 0.099 0.901 18 N -0.684 5.684 19 C 0.618 3.382 20 O -0.539 6.539 21 C 0.114 3.886 22 N -0.271 5.271 23 N -0.061 5.061 24 N -0.115 5.115 25 C 0.072 3.928 26 N -0.259 5.259 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.045 0.955 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.413 0.587 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.155 -12.176 -14.844 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.107 0.893 4 C 0.022 3.978 5 N -0.340 5.340 6 C -0.370 4.370 7 H 0.079 0.921 8 C -0.224 4.224 9 N -0.601 5.601 10 Si 0.766 3.234 11 H -0.212 1.212 12 H -0.240 1.240 13 H -0.188 1.188 14 C 0.001 3.999 15 C -0.180 4.180 16 C 0.062 3.938 17 H 0.117 0.883 18 N -0.336 5.336 19 C 0.398 3.602 20 O -0.413 6.413 21 C -0.169 4.169 22 N -0.145 5.145 23 N -0.055 5.055 24 N -0.030 5.030 25 C -0.064 4.064 26 N -0.115 5.115 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.043 -12.362 -15.297 26.024 hybrid contribution 1.032 -0.623 0.260 1.233 sum -16.011 -12.985 -15.037 25.516 Atomic orbital electron populations 1.21726 0.92499 1.02313 1.02871 1.21814 0.97146 1.00135 0.93587 0.89335 1.21192 0.81711 0.97906 0.96986 1.44467 1.02352 1.71899 1.15286 1.18910 0.97812 1.12388 1.07923 0.92078 1.25772 0.96771 1.00759 0.99091 1.69942 1.04979 1.38512 1.46682 0.86088 0.77531 0.83460 0.76333 1.21211 1.24044 1.18766 1.21241 0.96668 0.94999 0.86956 1.22318 0.96168 1.02085 0.97456 1.21037 0.92983 0.79755 1.00038 0.88290 1.45873 1.65192 1.14295 1.08288 1.16178 0.77825 0.81457 0.84692 1.90811 1.50986 1.68292 1.31253 1.25197 1.06725 0.98942 0.86064 1.76141 1.14728 0.98044 1.25573 1.78869 1.16516 1.14840 0.95247 1.50857 1.36023 1.10850 1.05268 1.23284 1.06739 0.81338 0.95074 1.75043 1.16067 0.94123 1.26275 0.92541 0.91194 0.91511 0.91519 0.94717 0.93058 0.93642 0.95777 0.91757 0.90231 0.74868 0.84863 0.84060 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.05 71.98 0.65 -2.27 16 2 C -0.11 -2.99 2.67 -10.72 -0.03 -3.02 16 3 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.15 5.19 5.50 86.36 0.48 5.66 16 5 N -0.62 -28.03 2.77 -699.11 -1.94 -29.96 16 6 C -0.24 -13.39 10.04 84.03 0.84 -12.54 16 7 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 8 C -0.03 -1.70 5.23 84.86 0.44 -1.26 16 9 N -0.95 -60.16 13.97 21.65 0.30 -59.86 16 10 Si 0.94 47.79 24.35 68.60 1.67 49.46 16 11 H -0.28 -14.13 6.62 99.48 0.66 -13.47 16 12 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 13 H -0.26 -12.96 6.63 99.48 0.66 -12.30 16 14 C 0.13 5.46 3.94 86.36 0.34 5.80 16 15 C -0.14 -4.95 5.77 30.67 0.18 -4.77 16 16 C 0.17 4.91 2.21 45.02 0.10 5.01 16 17 H 0.10 2.77 7.58 -2.39 -0.02 2.75 16 18 N -0.68 -20.19 3.59 -445.14 -1.60 -21.79 16 19 C 0.62 19.49 7.80 86.83 0.68 20.17 16 20 O -0.54 -19.35 16.76 -3.83 -0.06 -19.42 16 21 C 0.11 3.37 8.14 137.15 1.12 4.48 16 22 N -0.27 -7.76 12.26 -52.36 -0.64 -8.40 16 23 N -0.06 -1.45 13.23 37.02 0.49 -0.96 16 24 N -0.11 -2.14 4.39 -206.57 -0.91 -3.05 16 25 C 0.07 0.29 11.62 127.77 1.49 1.77 16 26 N -0.26 -6.68 12.17 -52.32 -0.64 -7.32 16 27 H 0.06 1.18 7.53 -2.38 -0.02 1.17 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 2.38 7.93 -2.38 -0.02 2.36 16 31 H 0.03 1.16 6.64 -2.39 -0.02 1.14 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.05 2.21 4.49 -2.39 -0.01 2.20 16 34 H 0.02 1.05 6.67 -2.39 -0.02 1.03 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.41 11.99 6.48 -92.71 -0.60 11.39 16 38 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 39 H 0.14 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -76.17 324.66 3.34 -72.83 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.38 Total: 9.44 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.28 Total: 19.02 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -4.93 Total: -131.34 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.42 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.67 Total: 49.46 kcal Total: -76.17 3.34 -72.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942562883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.487 kcal (2) G-P(sol) polarization free energy of solvation -76.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds