Wall clock time and date at job start Fri Apr 10 2020 17:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49399 * 2 1 4 4 C 1.53622 * 109.43308 * 120.23058 * 2 1 3 5 5 N 1.46920 * 108.54182 * 174.72781 * 4 2 1 6 6 C 1.36938 * 120.63045 * 126.37020 * 5 4 2 7 7 H 1.07996 * 119.99786 * 332.17837 * 6 5 4 8 8 C 1.38810 * 119.99976 * 152.18367 * 6 5 4 9 9 N 1.31624 * 120.00152 * 342.36237 * 8 6 5 10 10 Si 1.86800 * 120.00264 * 162.63776 * 8 6 5 11 11 H 1.48505 * 109.46651 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47149 * 119.99724 * 10 8 6 13 13 H 1.48493 * 109.47510 * 240.00094 * 10 8 6 14 14 C 1.46929 * 118.73799 * 306.08918 * 5 4 2 15 15 C 1.53187 * 108.77314 * 53.86216 * 14 5 4 16 16 C 1.53036 * 109.31796 * 305.36619 * 15 14 5 17 17 H 1.08998 * 109.45716 * 301.35889 * 16 15 14 18 18 N 1.46498 * 109.46333 * 181.38587 * 16 15 14 19 19 C 1.34775 * 120.00071 * 85.00260 * 18 16 15 20 20 O 1.21543 * 120.00067 * 359.97438 * 19 18 16 21 21 C 1.48005 * 119.99942 * 180.02562 * 19 18 16 22 22 N 1.34180 * 126.69931 * 359.67604 * 21 19 18 23 23 N 1.28988 * 107.25077 * 179.89576 * 22 21 19 24 24 N 1.28720 * 108.98871 * 0.38244 * 23 22 21 25 25 C 1.46492 * 125.31884 * 179.79512 * 24 23 22 26 26 N 1.28873 * 109.35763 * 359.75617 * 24 23 22 27 27 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47382 * 300.05713 * 1 2 3 29 29 H 1.09003 * 109.47321 * 60.05662 * 1 2 3 30 30 H 1.09000 * 109.73931 * 54.98354 * 4 2 1 31 31 H 1.09004 * 109.66058 * 294.41613 * 4 2 1 32 32 H 0.96999 * 120.00120 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.58909 * 173.65261 * 14 5 4 34 34 H 1.08999 * 109.58577 * 293.93308 * 14 5 4 35 35 H 1.09004 * 109.49944 * 65.32101 * 15 14 5 36 36 H 1.09007 * 109.49877 * 185.37780 * 15 14 5 37 37 H 0.97001 * 119.99759 * 264.99552 * 18 16 15 38 38 H 1.08995 * 109.47644 * 269.95222 * 25 24 23 39 39 H 1.09000 * 109.47391 * 29.95920 * 25 24 23 40 40 H 1.09004 * 109.47129 * 149.95637 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0411 -0.7294 1.2517 5 7 3.5046 -0.8295 1.1692 6 6 4.2936 -0.3801 2.1943 7 1 3.9458 0.4180 2.8333 8 6 5.5403 -0.9503 2.4119 9 7 5.8289 -2.1220 1.8863 10 14 6.8058 -0.0582 3.4569 11 1 6.2369 1.2286 3.9321 12 1 7.1668 -0.9017 4.6246 13 1 8.0199 0.2079 2.6444 14 6 4.1053 -1.4266 -0.0314 15 6 3.5708 -0.6945 -1.2663 16 6 2.0408 -0.7226 -1.2487 17 1 1.6968 -1.7567 -1.2358 18 7 1.5265 -0.0520 -2.4453 19 6 1.3971 -0.7372 -3.5987 20 8 1.7075 -1.9114 -3.6461 21 6 0.8780 -0.0596 -4.8078 22 7 0.4926 1.2219 -4.9057 23 7 0.1097 1.4143 -6.1223 24 7 0.2317 0.3139 -6.7788 25 6 -0.1062 0.1290 -8.1922 26 7 0.6984 -0.5995 -5.9986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5147 0.8894 29 1 -0.3634 0.5130 -0.8905 30 1 1.6085 -1.7288 1.2978 31 1 1.7630 -0.1670 2.1431 32 1 6.7002 -2.5203 2.0381 33 1 5.1896 -1.3245 0.0131 34 1 3.8397 -2.4823 -0.0864 35 1 3.9159 0.3394 -1.2541 36 1 3.9339 -1.1885 -2.1676 37 1 1.2790 0.8851 -2.4076 38 1 -1.1475 -0.1811 -8.2793 39 1 0.0393 1.0679 -8.7264 40 1 0.5383 -0.6376 -8.6226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942562884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:34 Heat of formation + Delta-G solvation = 116.851789 kcal Electronic energy + Delta-G solvation = -23802.675462 eV Core-core repulsion = 20270.601593 eV Total energy + Delta-G solvation = -3532.073869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.64488 -39.81741 -37.65272 -35.52638 -34.59743 -33.39967 -32.67802 -31.18329 -30.09491 -29.00305 -26.08822 -25.70118 -24.51984 -23.26733 -22.20919 -21.00406 -20.70607 -19.57027 -18.29796 -17.87527 -17.08979 -16.57148 -16.02264 -14.98988 -14.77125 -14.49679 -14.30991 -13.92603 -13.83265 -13.69068 -13.52009 -13.26313 -12.79429 -12.66113 -12.42011 -12.10226 -11.47238 -11.39953 -11.36505 -11.28668 -11.07055 -10.83568 -10.65253 -10.62106 -10.37695 -10.23194 -10.20358 -9.98521 -9.78496 -9.51878 -8.78222 -8.42040 -6.67927 -5.77148 -3.19658 0.75648 1.27908 1.47381 2.82216 3.10411 3.39058 3.47060 3.49052 3.79922 3.96500 4.37838 4.50909 4.59777 4.68738 5.02284 5.14244 5.32570 5.35383 5.41946 5.52865 5.60097 5.67332 5.89435 5.99690 6.11384 6.25468 6.25706 6.31984 6.46504 6.59401 6.68286 6.78029 6.86078 6.97372 7.37434 7.48874 7.69556 7.81843 7.91320 8.14822 8.46009 9.22130 9.85624 10.41816 11.31282 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.003302 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.701842 B = 8478.435176 C = 8780.711617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.074 0.926 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.253 4.253 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.173 3.827 15 C -0.149 4.149 16 C 0.157 3.843 17 H 0.087 0.913 18 N -0.695 5.695 19 C 0.611 3.389 20 O -0.507 6.507 21 C 0.135 3.865 22 N -0.254 5.254 23 N -0.058 5.058 24 N -0.137 5.137 25 C 0.093 3.907 26 N -0.249 5.249 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.254 0.746 33 H 0.091 0.909 34 H 0.022 0.978 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.406 0.594 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 5.988 -17.789 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 H 0.093 0.907 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.047 3.953 15 C -0.189 4.189 16 C 0.055 3.945 17 H 0.105 0.895 18 N -0.346 5.346 19 C 0.389 3.611 20 O -0.378 6.378 21 C -0.149 4.149 22 N -0.129 5.129 23 N -0.052 5.052 24 N -0.050 5.050 25 C -0.047 4.047 26 N -0.103 5.103 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.241 0.759 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.855 5.467 -18.152 22.905 hybrid contribution 0.713 0.515 0.483 1.003 sum -12.142 5.982 -17.670 22.258 Atomic orbital electron populations 1.21797 0.95701 1.01643 1.01074 1.22076 0.94623 1.00777 0.96086 0.90710 1.20984 0.85931 0.96621 0.93661 1.44139 0.99327 1.71437 1.16590 1.19214 0.98082 1.12445 1.08511 0.91533 1.25045 0.99950 0.95367 0.99292 1.70050 1.21766 1.14533 1.48147 0.86244 0.81729 0.79236 0.79675 1.20251 1.21760 1.21594 1.20768 0.99534 0.93119 0.81875 1.22616 0.93431 1.01906 1.00989 1.21247 0.94856 0.96996 0.81405 0.89480 1.46076 1.64335 1.14845 1.09372 1.16148 0.78858 0.85517 0.80556 1.90874 1.48936 1.14656 1.83361 1.25555 1.04640 0.89779 0.94918 1.76134 1.13556 1.14584 1.08617 1.78915 1.16585 1.10298 0.99416 1.50259 1.37805 1.03889 1.13092 1.22539 1.04396 1.06577 0.71195 1.75117 1.14990 1.18467 1.01752 0.92844 0.92563 0.93333 0.96019 0.92209 0.93639 0.89114 0.95990 0.92313 0.92618 0.75918 0.87656 0.86605 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.03 37.16 0.34 -1.60 16 2 C -0.11 -1.89 2.47 -90.27 -0.22 -2.11 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.16 3.14 5.83 -3.49 -0.02 3.12 16 5 N -0.59 -14.62 2.99 -172.06 -0.51 -15.13 16 6 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 7 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 8 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 9 N -0.90 -26.20 11.20 55.49 0.62 -25.58 16 10 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 15 C -0.15 -2.96 5.65 -26.62 -0.15 -3.11 16 16 C 0.16 2.73 1.88 -67.89 -0.13 2.60 16 17 H 0.09 1.66 7.57 -51.93 -0.39 1.27 16 18 N -0.70 -10.44 4.36 -54.66 -0.24 -10.67 16 19 C 0.61 10.00 7.80 -12.26 -0.10 9.91 16 20 O -0.51 -9.95 16.76 5.33 0.09 -9.87 16 21 C 0.14 1.99 8.14 -156.25 -1.27 0.72 16 22 N -0.25 -3.45 12.26 32.10 0.39 -3.06 16 23 N -0.06 -0.68 13.23 60.35 0.80 0.12 16 24 N -0.14 -1.36 4.39 -16.65 -0.07 -1.43 16 25 C 0.09 0.29 11.62 59.84 0.70 0.99 16 26 N -0.25 -3.34 12.17 32.11 0.39 -2.95 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.09 2.45 6.03 -51.93 -0.31 2.13 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 37 H 0.41 5.29 8.06 -40.82 -0.33 4.97 16 38 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.12 0.10 8.14 -51.93 -0.42 -0.33 16 40 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -33.73 335.06 -5.23 -38.95 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.61 Total: 0.31 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.11 Total: 7.65 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 1.38 Total: -58.70 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.73 -5.23 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942562884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.805 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds