Wall clock time and date at job start Fri Apr 10 2020 17:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49399 * 2 1 4 4 C 1.53622 * 109.43308 * 120.23058 * 2 1 3 5 5 N 1.46920 * 108.54182 * 174.72781 * 4 2 1 6 6 C 1.36938 * 120.63045 * 126.37020 * 5 4 2 7 7 H 1.07996 * 119.99786 * 332.17837 * 6 5 4 8 8 C 1.38810 * 119.99976 * 152.18367 * 6 5 4 9 9 N 1.31624 * 120.00152 * 342.36237 * 8 6 5 10 10 Si 1.86800 * 120.00264 * 162.63776 * 8 6 5 11 11 H 1.48505 * 109.46651 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47149 * 119.99724 * 10 8 6 13 13 H 1.48493 * 109.47510 * 240.00094 * 10 8 6 14 14 C 1.46929 * 118.73799 * 306.08918 * 5 4 2 15 15 C 1.53187 * 108.77314 * 53.86216 * 14 5 4 16 16 C 1.53036 * 109.31796 * 305.36619 * 15 14 5 17 17 H 1.08998 * 109.45716 * 301.35889 * 16 15 14 18 18 N 1.46498 * 109.46333 * 181.38587 * 16 15 14 19 19 C 1.34775 * 120.00071 * 85.00260 * 18 16 15 20 20 O 1.21543 * 120.00067 * 359.97438 * 19 18 16 21 21 C 1.48005 * 119.99942 * 180.02562 * 19 18 16 22 22 N 1.34180 * 126.69931 * 359.67604 * 21 19 18 23 23 N 1.28988 * 107.25077 * 179.89576 * 22 21 19 24 24 N 1.28720 * 108.98871 * 0.38244 * 23 22 21 25 25 C 1.46492 * 125.31884 * 179.79512 * 24 23 22 26 26 N 1.28873 * 109.35763 * 359.75617 * 24 23 22 27 27 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47382 * 300.05713 * 1 2 3 29 29 H 1.09003 * 109.47321 * 60.05662 * 1 2 3 30 30 H 1.09000 * 109.73931 * 54.98354 * 4 2 1 31 31 H 1.09004 * 109.66058 * 294.41613 * 4 2 1 32 32 H 0.96999 * 120.00120 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.58909 * 173.65261 * 14 5 4 34 34 H 1.08999 * 109.58577 * 293.93308 * 14 5 4 35 35 H 1.09004 * 109.49944 * 65.32101 * 15 14 5 36 36 H 1.09007 * 109.49877 * 185.37780 * 15 14 5 37 37 H 0.97001 * 119.99759 * 264.99552 * 18 16 15 38 38 H 1.08995 * 109.47644 * 269.95222 * 25 24 23 39 39 H 1.09000 * 109.47391 * 29.95920 * 25 24 23 40 40 H 1.09004 * 109.47129 * 149.95637 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0411 -0.7294 1.2517 5 7 3.5046 -0.8295 1.1692 6 6 4.2936 -0.3801 2.1943 7 1 3.9458 0.4180 2.8333 8 6 5.5403 -0.9503 2.4119 9 7 5.8289 -2.1220 1.8863 10 14 6.8058 -0.0582 3.4569 11 1 6.2369 1.2286 3.9321 12 1 7.1668 -0.9017 4.6246 13 1 8.0199 0.2079 2.6444 14 6 4.1053 -1.4266 -0.0314 15 6 3.5708 -0.6945 -1.2663 16 6 2.0408 -0.7226 -1.2487 17 1 1.6968 -1.7567 -1.2358 18 7 1.5265 -0.0520 -2.4453 19 6 1.3971 -0.7372 -3.5987 20 8 1.7075 -1.9114 -3.6461 21 6 0.8780 -0.0596 -4.8078 22 7 0.4926 1.2219 -4.9057 23 7 0.1097 1.4143 -6.1223 24 7 0.2317 0.3139 -6.7788 25 6 -0.1062 0.1290 -8.1922 26 7 0.6984 -0.5995 -5.9986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5147 0.8894 29 1 -0.3634 0.5130 -0.8905 30 1 1.6085 -1.7288 1.2978 31 1 1.7630 -0.1670 2.1431 32 1 6.7002 -2.5203 2.0381 33 1 5.1896 -1.3245 0.0131 34 1 3.8397 -2.4823 -0.0864 35 1 3.9159 0.3394 -1.2541 36 1 3.9339 -1.1885 -2.1676 37 1 1.2790 0.8851 -2.4076 38 1 -1.1475 -0.1811 -8.2793 39 1 0.0393 1.0679 -8.7264 40 1 0.5383 -0.6376 -8.6226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942562884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:34 Heat of formation + Delta-G solvation = 91.965530 kcal Electronic energy + Delta-G solvation = -23803.754611 eV Core-core repulsion = 20270.601593 eV Total energy + Delta-G solvation = -3533.153018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.56963 -41.19731 -39.22233 -36.42749 -36.18830 -34.38818 -34.22126 -32.91187 -31.75759 -29.74864 -27.41164 -27.34842 -25.96677 -24.23330 -23.66316 -22.63838 -22.01173 -21.09587 -19.43914 -18.74434 -18.65438 -17.87771 -17.40652 -16.77792 -16.17933 -15.87266 -15.58529 -15.28890 -15.22257 -14.78415 -14.58309 -14.30695 -14.23628 -14.12933 -13.60003 -13.20076 -13.05504 -13.00165 -12.71545 -12.61548 -12.36860 -12.28735 -12.26795 -12.08014 -12.02239 -11.74172 -11.59513 -11.53100 -11.49635 -11.18052 -10.56462 -10.16049 -8.70007 -7.85765 -5.31226 -0.19311 0.23183 0.78926 1.48166 1.50385 1.60821 1.71017 1.87191 2.53186 2.76818 3.05247 3.30208 3.64889 3.73628 3.95677 4.01372 4.06046 4.16093 4.23658 4.38253 4.49799 4.61059 4.61707 4.69274 4.73011 4.87009 4.89169 4.96273 5.01940 5.08910 5.14821 5.29627 5.38580 5.42896 5.53403 5.66254 5.72104 6.24268 6.40077 6.85486 7.00498 7.15024 7.85979 8.38335 9.21240 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030240 B = 0.003302 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.701842 B = 8478.435176 C = 8780.711617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.151 3.849 5 N -0.610 5.610 6 C -0.258 4.258 7 H 0.074 0.926 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.183 3.817 15 C -0.135 4.135 16 C 0.169 3.831 17 H 0.070 0.930 18 N -0.680 5.680 19 C 0.615 3.385 20 O -0.546 6.546 21 C 0.119 3.881 22 N -0.264 5.264 23 N -0.059 5.059 24 N -0.115 5.115 25 C 0.072 3.928 26 N -0.264 5.264 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.015 0.985 31 H 0.067 0.933 32 H 0.249 0.751 33 H 0.057 0.943 34 H -0.006 1.006 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.419 0.581 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 8.110 -19.146 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.100 0.900 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.389 4.389 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.583 5.583 10 Si 0.795 3.205 11 H -0.187 1.187 12 H -0.221 1.221 13 H -0.220 1.220 14 C 0.056 3.944 15 C -0.175 4.175 16 C 0.065 3.935 17 H 0.088 0.912 18 N -0.332 5.332 19 C 0.395 3.605 20 O -0.420 6.420 21 C -0.165 4.165 22 N -0.138 5.138 23 N -0.052 5.052 24 N -0.030 5.030 25 C -0.064 4.064 26 N -0.120 5.120 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.012 0.988 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.257 0.743 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.677 7.652 -19.526 25.598 hybrid contribution 1.174 -0.165 0.744 1.400 sum -13.503 7.487 -18.783 24.314 Atomic orbital electron populations 1.21741 0.92767 1.02075 1.02849 1.21874 0.96862 1.00057 0.93296 0.89973 1.21166 0.83390 0.96910 0.96053 1.44381 1.01184 1.71399 1.16277 1.19585 0.98531 1.12170 1.08571 0.90879 1.25826 1.01918 0.96056 1.01083 1.70211 1.21865 1.16158 1.50105 0.85213 0.79032 0.78480 0.77756 1.18698 1.22127 1.21970 1.20472 0.97760 0.92237 0.83894 1.22369 0.95445 1.01225 0.98449 1.20908 0.92928 0.96680 0.82965 0.91232 1.45764 1.63741 1.15262 1.08405 1.16299 0.78013 0.85029 0.81160 1.90854 1.50649 1.16396 1.84111 1.25048 1.06333 0.90348 0.94740 1.76095 1.14007 1.14012 1.09691 1.78843 1.16609 1.10773 0.98991 1.50824 1.35227 1.02596 1.14373 1.23276 1.06293 1.08903 0.67966 1.75076 1.15538 1.19540 1.01807 0.93133 0.90867 0.91490 0.96732 0.91418 0.94197 0.92459 0.98823 0.91798 0.93084 0.74330 0.85052 0.83773 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.03 71.98 0.65 -2.65 16 2 C -0.10 -3.14 2.47 -10.57 -0.03 -3.17 16 3 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 4 C 0.15 6.03 5.83 86.51 0.50 6.54 16 5 N -0.61 -30.52 2.99 -698.28 -2.09 -32.60 16 6 C -0.26 -14.09 9.59 84.03 0.81 -13.28 16 7 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 8 C -0.05 -3.02 4.90 84.86 0.42 -2.60 16 9 N -0.94 -56.47 11.20 21.65 0.24 -56.23 16 10 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 14 C 0.18 9.19 5.31 86.36 0.46 9.64 16 15 C -0.13 -5.43 5.65 30.67 0.17 -5.26 16 16 C 0.17 5.79 1.88 45.02 0.08 5.88 16 17 H 0.07 2.69 7.57 -2.39 -0.02 2.67 16 18 N -0.68 -19.66 4.36 -445.13 -1.94 -21.60 16 19 C 0.61 19.85 7.80 86.83 0.68 20.53 16 20 O -0.55 -21.71 16.76 -3.85 -0.06 -21.77 16 21 C 0.12 3.35 8.14 137.15 1.12 4.47 16 22 N -0.26 -6.69 12.26 -52.37 -0.64 -7.33 16 23 N -0.06 -1.23 13.23 37.02 0.49 -0.74 16 24 N -0.11 -1.98 4.39 -206.60 -0.91 -2.89 16 25 C 0.07 0.21 11.62 127.77 1.49 1.70 16 26 N -0.26 -6.67 12.17 -52.32 -0.64 -7.31 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.40 7.36 -2.39 -0.02 1.39 16 30 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 32 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.06 3.25 6.03 -2.39 -0.01 3.23 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.05 2.08 8.14 -2.38 -0.02 2.07 16 37 H 0.42 10.06 8.06 -92.71 -0.75 9.31 16 38 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -75.32 335.06 3.14 -72.17 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.32 Total: 9.43 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 6.34 Total: 21.79 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.48 Total: -128.71 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.06 Total: -21.77 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.32 3.14 -72.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942562884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.140 kcal (2) G-P(sol) polarization free energy of solvation -75.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds