Wall clock time and date at job start Fri Apr 10 2020 17:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.52498 * 2 1 4 4 C 1.53199 * 109.49470 * 239.91856 * 2 1 3 5 5 N 1.46931 * 108.77047 * 185.41198 * 4 2 1 6 6 C 1.36944 * 120.62683 * 233.62776 * 5 4 2 7 7 H 1.07999 * 119.99522 * 27.67387 * 6 5 4 8 8 C 1.38810 * 119.99876 * 207.66837 * 6 5 4 9 9 N 1.31622 * 119.99955 * 17.36315 * 8 6 5 10 10 Si 1.86798 * 120.00035 * 197.36407 * 8 6 5 11 11 H 1.48511 * 109.46866 * 90.00062 * 10 8 6 12 12 H 1.48500 * 109.47253 * 210.00164 * 10 8 6 13 13 H 1.48494 * 109.47082 * 330.00244 * 10 8 6 14 14 C 1.46919 * 118.74141 * 53.61345 * 5 4 2 15 15 C 1.53194 * 108.77597 * 306.38875 * 14 5 4 16 16 C 1.53035 * 109.49907 * 120.08318 * 2 1 3 17 17 H 1.09000 * 109.45418 * 61.30252 * 16 2 1 18 18 N 1.46504 * 109.46265 * 301.33347 * 16 2 1 19 19 C 1.34769 * 120.00150 * 154.92890 * 18 16 2 20 20 O 1.21535 * 120.00317 * 0.02562 * 19 18 16 21 21 C 1.48011 * 119.99817 * 180.02562 * 19 18 16 22 22 N 1.34182 * 126.69795 * 0.04343 * 21 19 18 23 23 N 1.28989 * 107.25138 * 179.70610 * 22 21 19 24 24 N 1.28716 * 108.98485 * 0.42863 * 23 22 21 25 25 C 1.46506 * 125.31947 * 179.83174 * 24 23 22 26 26 N 1.28869 * 109.36341 * 359.56121 * 24 23 22 27 27 H 1.09001 * 109.46886 * 299.91344 * 1 2 3 28 28 H 1.08990 * 109.47182 * 59.92128 * 1 2 3 29 29 H 1.09006 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.58310 * 65.63125 * 4 2 1 31 31 H 1.08997 * 109.58823 * 305.19813 * 4 2 1 32 32 H 0.96999 * 119.99988 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.58742 * 186.60156 * 14 5 4 34 34 H 1.08997 * 109.58844 * 66.17044 * 14 5 4 35 35 H 1.09003 * 109.49514 * 294.68188 * 15 14 5 36 36 H 1.08993 * 109.50086 * 174.58826 * 15 14 5 37 37 H 0.96999 * 119.99654 * 334.94194 * 18 16 2 38 38 H 1.09005 * 109.46598 * 269.69106 * 25 24 23 39 39 H 1.08994 * 109.47063 * 29.68870 * 25 24 23 40 40 H 1.09003 * 109.47255 * 149.69440 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2497 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3785 -2.1942 7 1 3.9464 0.4216 -2.8313 8 6 5.5394 -0.9499 -2.4139 9 7 5.8285 -2.1207 -1.8866 10 14 6.8055 -0.0573 -3.4576 11 1 7.6351 0.8167 -2.5897 12 1 7.6760 -1.0503 -4.1369 13 1 6.1119 0.7715 -4.4760 14 6 4.1053 -1.4267 0.0306 15 6 3.5709 -0.6951 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7573 1.2350 18 7 1.5266 -0.0530 2.4453 19 6 1.3973 -0.7386 3.5983 20 8 1.7076 -1.9128 3.6453 21 6 0.8773 -0.0617 4.8075 22 7 0.4958 1.2209 4.9070 23 7 0.1024 1.4099 6.1208 24 7 0.2302 0.3109 6.7784 25 6 -0.1088 0.1250 8.1915 26 7 0.6977 -0.6020 5.9981 27 1 -0.3633 0.5125 0.8908 28 1 -0.3633 0.5150 -0.8892 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7637 -0.1579 -2.1389 31 1 1.6052 -1.7216 -1.2981 32 1 6.6990 -2.5202 -2.0404 33 1 5.1896 -1.3246 -0.0139 34 1 3.8375 -2.4818 0.0866 35 1 3.9160 0.3388 1.2540 36 1 3.9335 -1.1897 2.1669 37 1 1.2791 0.8841 2.4079 38 1 0.7645 0.3432 8.8063 39 1 -0.9212 0.7994 8.4619 40 1 -0.4217 -0.9059 8.3576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942562885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:37 Heat of formation + Delta-G solvation = 116.835127 kcal Electronic energy + Delta-G solvation = -23803.899528 eV Core-core repulsion = 20271.824937 eV Total energy + Delta-G solvation = -3532.074591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.64525 -39.82216 -37.66666 -35.52545 -34.59614 -33.39996 -32.69124 -31.18832 -30.09340 -29.00213 -26.08934 -25.70765 -24.51866 -23.26744 -22.21202 -21.00693 -20.70730 -19.56737 -18.29661 -17.87554 -17.09137 -16.56938 -16.02166 -14.99839 -14.76900 -14.49179 -14.31570 -13.93308 -13.83050 -13.69299 -13.51864 -13.26765 -12.79437 -12.65642 -12.42070 -12.09992 -11.47567 -11.39558 -11.36881 -11.29572 -11.06113 -10.82585 -10.66544 -10.62669 -10.37652 -10.23215 -10.20361 -9.98389 -9.78371 -9.52601 -8.78176 -8.41805 -6.67871 -5.76964 -3.19660 0.75712 1.27928 1.47365 2.82178 3.10461 3.40015 3.46879 3.47965 3.79861 3.96458 4.38114 4.50866 4.59678 4.68668 5.02258 5.14019 5.32178 5.35359 5.42008 5.52894 5.60179 5.67286 5.89341 5.99868 6.11291 6.25351 6.26174 6.31908 6.46762 6.59362 6.68365 6.78141 6.86057 6.97456 7.37607 7.48885 7.69426 7.81645 7.91338 8.14823 8.46272 9.22349 9.85685 10.41874 11.31592 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030263 B = 0.003302 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.009292 B = 8478.675792 C = 8780.973751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.074 0.926 4 C 0.155 3.845 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.067 0.933 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.150 4.150 16 C 0.157 3.843 17 H 0.087 0.913 18 N -0.695 5.695 19 C 0.611 3.389 20 O -0.507 6.507 21 C 0.135 3.865 22 N -0.254 5.254 23 N -0.058 5.058 24 N -0.137 5.137 25 C 0.093 3.907 26 N -0.249 5.249 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.254 0.746 33 H 0.091 0.909 34 H 0.022 0.978 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.406 0.594 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 5.932 17.747 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 H 0.093 0.907 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.190 4.190 16 C 0.055 3.945 17 H 0.105 0.895 18 N -0.346 5.346 19 C 0.389 3.611 20 O -0.378 6.378 21 C -0.149 4.149 22 N -0.129 5.129 23 N -0.052 5.052 24 N -0.050 5.050 25 C -0.047 4.047 26 N -0.103 5.103 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.241 0.759 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.943 5.402 18.107 22.904 hybrid contribution 0.739 0.548 -0.468 1.032 sum -12.205 5.950 17.639 22.260 Atomic orbital electron populations 1.21793 0.95665 1.01655 1.01083 1.21997 0.94659 1.00806 0.96107 0.90727 1.20900 0.85930 0.96675 0.93686 1.44117 0.99317 1.71398 1.16646 1.19188 0.98198 1.12340 1.08616 0.91557 1.25047 0.99920 0.95349 0.99299 1.70037 1.21891 1.14534 1.48058 0.86290 0.81674 0.78896 0.79889 1.21467 1.21802 1.20442 1.20773 0.99534 0.93114 0.81847 1.22625 0.93432 1.01910 1.01027 1.21249 0.94861 0.97000 0.81391 0.89471 1.46075 1.64341 1.14841 1.09373 1.16145 0.78854 0.85518 0.80556 1.90872 1.48939 1.14658 1.83353 1.25557 1.04722 0.89700 0.94917 1.76134 1.13496 1.14548 1.08716 1.78915 1.16506 1.10336 0.99458 1.50261 1.37734 1.04016 1.13034 1.22543 1.04411 1.06674 0.71076 1.75116 1.15103 1.18460 1.01649 0.93321 0.92555 0.92834 0.92220 0.96052 0.93578 0.89092 0.95996 0.92322 0.92614 0.75918 0.87630 0.86614 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.03 37.16 0.34 -1.60 16 2 C -0.11 -1.89 2.46 -90.50 -0.22 -2.11 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.16 3.14 5.80 -3.70 -0.02 3.12 16 5 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 6 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 7 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 10 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.17 4.19 5.31 -3.71 -0.02 4.17 16 15 C -0.15 -2.97 5.65 -26.61 -0.15 -3.12 16 16 C 0.16 2.73 1.88 -67.89 -0.13 2.60 16 17 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.70 -10.44 4.36 -54.66 -0.24 -10.68 16 19 C 0.61 10.01 7.80 -12.26 -0.10 9.91 16 20 O -0.51 -9.96 16.76 5.34 0.09 -9.87 16 21 C 0.14 1.99 8.14 -156.25 -1.27 0.72 16 22 N -0.25 -3.45 12.26 32.10 0.39 -3.06 16 23 N -0.06 -0.68 13.23 60.35 0.80 0.12 16 24 N -0.14 -1.36 4.39 -16.64 -0.07 -1.43 16 25 C 0.09 0.29 11.62 59.85 0.70 0.99 16 26 N -0.25 -3.34 12.17 32.11 0.39 -2.95 16 27 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.41 5.30 8.06 -40.82 -0.33 4.97 16 38 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 40 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -33.72 335.02 -5.23 -38.95 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.61 Total: 0.34 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -1.11 Total: 7.64 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 1.38 Total: -58.74 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.72 -5.23 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942562885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.781 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds