Wall clock time and date at job start Fri Apr 10 2020 17:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21276 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99555 * 179.97438 * 8 7 5 11 11 N 1.46501 * 109.46899 * 180.02562 * 10 8 7 12 12 N 1.28879 * 125.44878 * 269.71706 * 11 10 8 13 13 C 1.31043 * 107.91614 * 179.89858 * 12 11 10 14 14 N 1.33315 * 106.89975 * 0.36363 * 13 12 11 15 15 N 1.28789 * 125.44801 * 90.02884 * 11 10 8 16 16 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 17 17 C 1.53188 * 109.30760 * 298.63191 * 16 5 4 18 18 N 1.46920 * 108.77580 * 54.63833 * 17 16 5 19 19 C 1.36939 * 120.63582 * 126.36663 * 18 17 16 20 20 H 1.07995 * 120.00274 * 209.19622 * 19 18 17 21 21 C 1.38814 * 119.99924 * 29.19414 * 19 18 17 22 22 N 1.31623 * 119.99750 * 24.22945 * 21 19 18 23 23 Si 1.86799 * 120.00119 * 204.23697 * 21 19 18 24 24 H 1.48497 * 109.46863 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47014 * 299.99863 * 23 21 19 26 26 H 1.48505 * 109.47110 * 59.99717 * 23 21 19 27 27 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 28 28 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 29 29 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 30 30 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 31 31 H 1.09000 * 109.38856 * 185.34959 * 4 2 1 32 32 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 33 33 H 1.09002 * 109.47608 * 300.00323 * 10 8 7 34 34 H 1.09000 * 109.47224 * 60.00576 * 10 8 7 35 35 H 1.07997 * 126.55179 * 180.14171 * 13 12 11 36 36 H 1.09004 * 109.49599 * 178.68183 * 16 5 4 37 37 H 1.08998 * 109.52068 * 58.60136 * 16 5 4 38 38 H 1.08993 * 109.59025 * 294.84561 * 17 16 5 39 39 H 1.09001 * 109.58413 * 174.42141 * 17 16 5 40 40 H 0.96998 * 120.00078 * 5.78560 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5320 -4.4440 2.1730 10 6 1.9498 -4.7178 4.0397 11 7 1.1127 -5.8961 4.2784 12 7 0.0355 -5.9169 4.9857 13 6 -0.4353 -7.1397 4.9673 14 7 0.4021 -7.8663 4.2269 15 7 1.3385 -7.0781 3.8195 16 6 2.2843 -2.8431 -0.0582 17 6 1.7740 -2.1421 -1.3211 18 7 2.0226 -0.6996 -1.1945 19 6 2.7052 -0.0210 -2.1685 20 1 3.2868 0.8520 -1.9119 21 6 2.6496 -0.4553 -3.4858 22 7 1.6267 -1.1728 -3.8995 23 14 4.0267 -0.0216 -4.6712 24 1 3.7312 -0.6007 -6.0063 25 1 4.1354 1.4550 -4.7846 26 1 5.3083 -0.5749 -4.1647 27 1 -0.3634 -1.0276 0.0063 28 1 -0.3633 0.5194 0.8867 29 1 -0.3633 0.5084 -0.8931 30 1 1.5987 -0.2724 2.1349 31 1 3.1240 -0.6413 1.2942 32 1 2.8564 -2.5412 2.8798 33 1 2.9859 -5.0294 3.9072 34 1 1.8796 -4.0430 4.8929 35 1 -1.3287 -7.4924 5.4609 36 1 2.0200 -3.8999 -0.0966 37 1 3.3678 -2.7410 0.0020 38 1 0.7043 -2.3203 -1.4310 39 1 2.3024 -2.5288 -2.1925 40 1 0.8724 -1.3274 -3.3095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947303915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:52 Heat of formation + Delta-G solvation = 116.628287 kcal Electronic energy + Delta-G solvation = -23967.372297 eV Core-core repulsion = 20435.288737 eV Total energy + Delta-G solvation = -3532.083560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.50054 -40.18182 -38.14492 -35.22934 -34.84643 -33.26474 -32.85129 -31.25142 -30.01954 -28.84128 -27.03923 -24.46285 -24.13949 -23.52578 -22.02558 -21.98559 -20.77549 -18.92206 -18.17835 -18.09285 -17.28013 -16.43169 -16.26161 -15.75928 -15.28831 -14.53109 -14.21502 -14.05242 -13.97578 -13.62693 -13.47681 -13.32926 -12.90599 -12.76092 -12.23193 -12.14845 -11.80113 -11.34589 -11.32058 -11.15774 -10.96863 -10.87131 -10.77921 -10.64088 -10.48959 -10.31867 -10.04756 -10.03062 -9.79343 -9.32060 -9.02260 -8.41008 -6.94964 -6.10388 -3.29400 0.98619 1.53926 2.08503 2.23161 2.90738 3.46833 3.49955 3.68355 3.82802 4.17221 4.23229 4.35116 4.54151 4.66848 5.04224 5.13378 5.31860 5.37202 5.50269 5.54482 5.58081 5.77603 5.82886 5.84315 5.99156 6.08489 6.14269 6.21607 6.35403 6.40334 6.52544 6.58180 6.75148 6.88520 7.01483 7.14942 7.26368 7.90179 7.97255 8.17435 8.53977 9.06946 9.79780 10.24168 11.18158 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.003335 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.199712 B = 8393.771393 C = 8743.557351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.068 0.932 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.087 0.913 7 N -0.713 5.713 8 C 0.500 3.500 9 O -0.519 6.519 10 C 0.108 3.892 11 N -0.125 5.125 12 N -0.303 5.303 13 C 0.144 3.856 14 N -0.286 5.286 15 N -0.048 5.048 16 C -0.143 4.143 17 C 0.154 3.846 18 N -0.591 5.591 19 C -0.353 4.353 20 H 0.056 0.944 21 C -0.022 4.022 22 N -0.913 5.913 23 Si 1.065 2.935 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.236 0.764 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.020 0.980 39 H 0.081 0.919 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -4.374 19.383 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 H 0.087 0.913 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.105 0.895 7 N -0.364 5.364 8 C 0.282 3.718 9 O -0.393 6.393 10 C -0.016 4.016 11 N -0.037 5.037 12 N -0.152 5.152 13 C -0.159 4.159 14 N -0.157 5.157 15 N -0.042 5.042 16 C -0.183 4.183 17 C 0.028 3.972 18 N -0.314 5.314 19 C -0.482 4.482 20 H 0.074 0.926 21 C -0.224 4.224 22 N -0.552 5.552 23 Si 0.894 3.106 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.252 0.748 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.099 0.901 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.898 -4.901 16.968 17.763 hybrid contribution -0.768 0.500 2.191 2.375 sum 1.130 -4.401 19.159 19.691 Atomic orbital electron populations 1.22344 0.98787 1.00973 1.00400 1.20354 0.91624 0.95342 0.86311 0.91339 1.22236 1.01477 0.93657 0.99840 1.21182 0.99945 0.91508 0.82558 0.89470 1.46188 1.34726 1.26304 1.29228 1.20172 0.84046 0.81934 0.85655 1.90837 1.27476 1.64788 1.56247 1.22058 0.94945 0.83988 1.00633 1.49485 1.15824 1.08972 1.29374 1.74693 1.00344 1.24150 1.16032 1.27339 1.02407 0.85762 1.00394 1.75885 1.01591 1.25541 1.12672 1.79021 1.19848 0.89217 1.16110 1.22466 1.00534 0.99106 0.96230 1.20897 0.97324 0.84045 0.94954 1.44207 1.64546 1.02493 1.20150 1.19931 1.25547 1.14194 0.88498 0.92632 1.25880 1.01398 0.99487 0.95672 1.70781 1.05540 1.40908 1.38017 0.83529 0.75205 0.75615 0.76208 1.21093 1.21985 1.22055 0.93374 0.94126 0.92649 0.92264 0.91580 0.76632 0.83563 0.83758 0.74799 0.92669 0.92053 0.96197 0.90078 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.02 37.16 0.34 -2.69 16 2 C 0.17 3.29 3.27 -67.82 -0.22 3.07 16 3 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 4 C -0.13 -1.98 4.99 -26.84 -0.13 -2.11 16 5 C 0.15 2.33 2.21 -67.88 -0.15 2.18 16 6 H 0.09 1.56 5.93 -51.93 -0.31 1.26 16 7 N -0.71 -7.94 5.08 -53.76 -0.27 -8.22 16 8 C 0.50 6.18 7.86 -10.99 -0.09 6.09 16 9 O -0.52 -9.30 16.09 5.56 0.09 -9.21 16 10 C 0.11 0.86 7.08 -5.19 -0.04 0.82 16 11 N -0.13 -1.50 3.49 -11.72 -0.04 -1.54 16 12 N -0.30 -3.64 12.13 29.34 0.36 -3.29 16 13 C 0.14 1.56 13.26 -91.58 -1.21 0.34 16 14 N -0.29 -3.87 12.50 29.33 0.37 -3.50 16 15 N -0.05 -0.67 13.25 60.35 0.80 0.13 16 16 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 17 C 0.15 3.53 4.29 -3.72 -0.02 3.51 16 18 N -0.59 -13.90 2.55 -165.03 -0.42 -14.32 16 19 C -0.35 -9.41 9.48 -15.06 -0.14 -9.56 16 20 H 0.06 1.48 7.94 -52.49 -0.42 1.07 16 21 C -0.02 -0.60 4.69 -17.43 -0.08 -0.68 16 22 N -0.91 -26.94 12.45 55.49 0.69 -26.25 16 23 Si 1.06 24.67 29.98 -169.99 -5.10 19.57 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 27 H 0.05 0.91 5.74 -51.93 -0.30 0.61 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.40 2.87 8.60 -40.82 -0.35 2.52 16 33 H 0.15 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.24 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.48 7.23 -51.93 -0.38 0.11 16 39 H 0.08 2.11 6.39 -51.93 -0.33 1.78 16 40 H 0.27 8.05 6.71 -40.82 -0.27 7.78 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -35.79 330.32 -5.82 -41.61 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.37 Total: 1.83 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.90 Total: -1.80 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 1.48 Total: -56.98 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.10 Total: 19.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.79 -5.82 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947303915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.238 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds