Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.58624 * 2 1 4 4 C 1.53192 * 109.58642 * 120.44068 * 2 1 3 5 5 C 1.53039 * 109.31340 * 174.43214 * 4 2 1 6 6 H 1.09002 * 109.45517 * 58.62940 * 5 4 2 7 7 N 1.46499 * 109.45934 * 178.59829 * 5 4 2 8 8 C 1.34781 * 119.99877 * 205.02782 * 7 5 4 9 9 O 1.21527 * 120.00290 * 0.02562 * 8 7 5 10 10 C 1.48010 * 119.99542 * 180.02562 * 8 7 5 11 11 N 1.34178 * 126.69884 * 0.02562 * 10 8 7 12 12 N 1.28991 * 107.25143 * 179.97438 * 11 10 8 13 13 N 1.28716 * 108.98425 * 0.02562 * 12 11 10 14 14 C 1.46502 * 125.31899 * 180.02562 * 13 12 11 15 15 N 1.28866 * 109.36288 * 359.97438 * 13 12 11 16 16 C 1.53037 * 109.52825 * 298.61794 * 5 4 2 17 17 C 1.53186 * 109.31362 * 61.37094 * 16 5 4 18 18 N 1.46919 * 108.77721 * 305.36382 * 17 16 5 19 19 C 1.36945 * 120.63483 * 233.63192 * 18 17 16 20 20 H 1.07995 * 120.00239 * 150.16111 * 19 18 17 21 21 C 1.38812 * 119.99492 * 330.16031 * 19 18 17 22 22 N 1.31615 * 120.00176 * 344.50332 * 21 19 18 23 23 Si 1.86807 * 119.99712 * 164.49456 * 21 19 18 24 24 H 1.48504 * 109.46650 * 60.00107 * 23 21 19 25 25 H 1.48497 * 109.46826 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47036 * 300.00237 * 23 21 19 27 27 H 1.09005 * 109.47442 * 180.28480 * 1 2 3 28 28 H 1.09004 * 109.47299 * 300.28157 * 1 2 3 29 29 H 1.08999 * 109.47399 * 60.28162 * 1 2 3 30 30 H 1.08998 * 109.50780 * 54.47773 * 4 2 1 31 31 H 1.09000 * 109.48745 * 294.38341 * 4 2 1 32 32 H 0.97001 * 120.00118 * 25.03266 * 7 5 4 33 33 H 1.08999 * 109.47178 * 89.96866 * 14 13 12 34 34 H 1.08993 * 109.47365 * 209.97134 * 14 13 12 35 35 H 1.08997 * 109.46968 * 329.97729 * 14 13 12 36 36 H 1.09002 * 109.49342 * 181.32238 * 16 5 4 37 37 H 1.08992 * 109.49922 * 301.41727 * 16 5 4 38 38 H 1.09003 * 109.58774 * 65.15306 * 17 16 5 39 39 H 1.09000 * 109.58957 * 185.43527 * 17 16 5 40 40 H 0.97001 * 119.99608 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7312 1.2443 5 6 3.5674 -0.8495 1.1690 6 1 4.0058 0.1460 1.0993 7 7 4.0651 -1.5187 2.3734 8 6 5.3292 -1.3050 2.7895 9 8 6.0559 -0.5568 2.1659 10 6 5.8321 -1.9816 4.0061 11 7 5.1507 -2.8294 4.7918 12 7 5.9450 -3.1937 5.7407 13 7 7.0825 -2.6131 5.5807 14 6 8.2461 -2.7740 6.4561 15 7 7.0383 -1.8689 4.5295 16 6 3.9568 -1.6657 -0.0656 17 6 3.4650 -0.9453 -1.3249 18 7 2.0225 -0.6980 -1.1954 19 6 1.1535 -1.1107 -2.1700 20 1 0.1396 -1.3782 -1.9115 21 6 1.5759 -1.1853 -3.4902 22 7 2.6866 -0.5841 -3.8607 23 14 0.5681 -2.1391 -4.7408 24 1 -0.7925 -1.5511 -4.8321 25 1 1.2294 -2.0665 -6.0684 26 1 0.4665 -3.5584 -4.3159 27 1 -0.3634 -1.0277 0.0051 28 1 -0.3634 0.5182 0.8875 29 1 -0.3634 0.5094 -0.8925 30 1 1.6031 -1.7273 1.2889 31 1 1.7657 -0.1700 2.1365 32 1 3.4850 -2.1157 2.8714 33 1 8.8567 -3.6037 6.1000 34 1 8.8370 -1.8581 6.4472 35 1 7.9104 -2.9800 7.4724 36 1 5.0411 -1.7695 -0.1059 37 1 3.4982 -2.6528 -0.0087 38 1 3.9903 0.0038 -1.4317 39 1 3.6540 -1.5679 -2.1994 40 1 2.9815 -0.6360 -4.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947616701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = 118.866948 kcal Electronic energy + Delta-G solvation = -23697.354463 eV Core-core repulsion = 20165.367979 eV Total energy + Delta-G solvation = -3531.986485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.64754 -39.73628 -37.65942 -35.52783 -34.67015 -33.40201 -32.41003 -31.39892 -29.79340 -28.91238 -26.43437 -25.61709 -24.49869 -23.28559 -22.07641 -21.40994 -20.21073 -19.46272 -18.37875 -17.87707 -17.05678 -16.27006 -15.93795 -15.13736 -14.89106 -14.36196 -14.29366 -13.97237 -13.83361 -13.69514 -13.57442 -13.26675 -12.80401 -12.69752 -12.42549 -11.58019 -11.39738 -11.37112 -11.20808 -11.11534 -10.93472 -10.88900 -10.65020 -10.61527 -10.33200 -10.30137 -10.09942 -10.01365 -9.73394 -9.41954 -8.79323 -8.40712 -6.61311 -5.74768 -3.18952 0.75520 1.27655 1.47242 2.81579 3.09936 3.40636 3.46903 3.47414 3.79712 3.95850 4.38135 4.51651 4.59462 4.68719 5.03083 5.26400 5.35314 5.38618 5.44858 5.57501 5.67217 5.78115 5.98436 6.17413 6.20227 6.34211 6.38363 6.44170 6.52348 6.63937 6.79455 6.83735 7.04903 7.12628 7.38530 7.48611 7.70885 7.85335 7.91173 8.14306 8.49881 9.25030 9.88513 10.45788 11.34068 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003212 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.389300 B = 8714.898861 C = 9008.600591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.087 0.913 7 N -0.698 5.698 8 C 0.611 3.389 9 O -0.507 6.507 10 C 0.135 3.865 11 N -0.254 5.254 12 N -0.058 5.058 13 N -0.137 5.137 14 C 0.093 3.907 15 N -0.249 5.249 16 C -0.149 4.149 17 C 0.176 3.824 18 N -0.587 5.587 19 C -0.252 4.252 20 H 0.070 0.930 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.406 0.594 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.089 0.911 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -4.114 20.305 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.175 4.175 5 C 0.049 3.951 6 H 0.105 0.895 7 N -0.348 5.348 8 C 0.389 3.611 9 O -0.378 6.378 10 C -0.149 4.149 11 N -0.129 5.129 12 N -0.052 5.052 13 N -0.050 5.050 14 C -0.047 4.047 15 N -0.103 5.103 16 C -0.189 4.189 17 C 0.049 3.951 18 N -0.311 5.311 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.107 0.893 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.245 -3.902 20.167 22.134 hybrid contribution -0.471 -0.625 -0.673 1.032 sum 7.774 -4.527 19.494 21.470 Atomic orbital electron populations 1.21793 0.95683 1.01439 1.00390 1.20357 0.93149 0.93582 0.86486 0.95411 1.22410 0.93133 1.02017 0.99903 1.21224 0.94679 0.96790 0.82410 0.89522 1.46111 1.11713 1.47915 1.29110 1.16158 0.83006 0.81166 0.80728 1.90870 1.56199 1.35960 1.54759 1.25551 0.88339 1.00367 1.00653 1.76134 1.24019 1.11653 1.01077 1.78916 0.90797 1.16881 1.18618 1.50261 1.12256 1.25629 1.16892 1.22541 0.82922 1.06337 0.92904 1.75113 1.21368 1.14279 0.99560 1.22617 0.99924 0.99799 0.96596 1.20730 0.83300 0.97312 0.93712 1.44159 1.02951 1.64959 1.18995 1.19116 0.95194 1.37822 0.86061 0.91282 1.25107 0.97888 0.99504 0.97017 1.70009 1.24104 1.43688 1.16818 0.86407 0.79609 0.80224 0.80718 1.20914 1.21722 1.21075 0.92747 0.94266 0.91810 0.91463 0.92392 0.75920 0.87635 0.86745 0.86610 0.92721 0.92333 0.96009 0.89284 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.15 0.30 -2.17 16 2 C 0.17 3.45 3.50 -67.60 -0.24 3.21 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 5 C 0.15 2.64 2.42 -67.89 -0.16 2.47 16 6 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 7 N -0.70 -10.54 5.07 -54.66 -0.28 -10.81 16 8 C 0.61 10.06 7.80 -12.25 -0.10 9.97 16 9 O -0.51 -9.99 16.76 5.34 0.09 -9.90 16 10 C 0.14 1.99 8.14 -156.25 -1.27 0.72 16 11 N -0.25 -3.46 12.26 32.10 0.39 -3.07 16 12 N -0.06 -0.68 13.23 60.35 0.80 0.12 16 13 N -0.14 -1.36 4.39 -16.65 -0.07 -1.43 16 14 C 0.09 0.30 11.62 59.85 0.70 0.99 16 15 N -0.25 -3.35 12.17 32.11 0.39 -2.96 16 16 C -0.15 -2.95 5.65 -26.62 -0.15 -3.10 16 17 C 0.18 4.21 5.28 -3.72 -0.02 4.19 16 18 N -0.59 -14.25 2.99 -164.78 -0.49 -14.74 16 19 C -0.25 -6.67 8.57 -15.06 -0.13 -6.80 16 20 H 0.07 1.77 6.24 -52.49 -0.33 1.44 16 21 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 22 N -0.90 -26.09 11.23 55.49 0.62 -25.47 16 23 Si 0.90 21.53 29.58 -169.99 -5.03 16.51 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.26 7.63 -51.93 -0.40 0.87 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.41 5.28 8.35 -40.82 -0.34 4.93 16 33 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -33.40 332.81 -5.38 -38.78 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.53 Total: 0.84 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.29 Total: 7.13 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 1.36 Total: -58.37 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.40 -5.38 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947616701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.644 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds