Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.58624 * 2 1 4 4 C 1.53192 * 109.58642 * 120.44068 * 2 1 3 5 5 C 1.53039 * 109.31340 * 174.43214 * 4 2 1 6 6 H 1.09002 * 109.45517 * 58.62940 * 5 4 2 7 7 N 1.46499 * 109.45934 * 178.59829 * 5 4 2 8 8 C 1.34781 * 119.99877 * 205.02782 * 7 5 4 9 9 O 1.21527 * 120.00290 * 0.02562 * 8 7 5 10 10 C 1.48010 * 119.99542 * 180.02562 * 8 7 5 11 11 N 1.34178 * 126.69884 * 0.02562 * 10 8 7 12 12 N 1.28991 * 107.25143 * 179.97438 * 11 10 8 13 13 N 1.28716 * 108.98425 * 0.02562 * 12 11 10 14 14 C 1.46502 * 125.31899 * 180.02562 * 13 12 11 15 15 N 1.28866 * 109.36288 * 359.97438 * 13 12 11 16 16 C 1.53037 * 109.52825 * 298.61794 * 5 4 2 17 17 C 1.53186 * 109.31362 * 61.37094 * 16 5 4 18 18 N 1.46919 * 108.77721 * 305.36382 * 17 16 5 19 19 C 1.36945 * 120.63483 * 233.63192 * 18 17 16 20 20 H 1.07995 * 120.00239 * 150.16111 * 19 18 17 21 21 C 1.38812 * 119.99492 * 330.16031 * 19 18 17 22 22 N 1.31615 * 120.00176 * 344.50332 * 21 19 18 23 23 Si 1.86807 * 119.99712 * 164.49456 * 21 19 18 24 24 H 1.48504 * 109.46650 * 60.00107 * 23 21 19 25 25 H 1.48497 * 109.46826 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47036 * 300.00237 * 23 21 19 27 27 H 1.09005 * 109.47442 * 180.28480 * 1 2 3 28 28 H 1.09004 * 109.47299 * 300.28157 * 1 2 3 29 29 H 1.08999 * 109.47399 * 60.28162 * 1 2 3 30 30 H 1.08998 * 109.50780 * 54.47773 * 4 2 1 31 31 H 1.09000 * 109.48745 * 294.38341 * 4 2 1 32 32 H 0.97001 * 120.00118 * 25.03266 * 7 5 4 33 33 H 1.08999 * 109.47178 * 89.96866 * 14 13 12 34 34 H 1.08993 * 109.47365 * 209.97134 * 14 13 12 35 35 H 1.08997 * 109.46968 * 329.97729 * 14 13 12 36 36 H 1.09002 * 109.49342 * 181.32238 * 16 5 4 37 37 H 1.08992 * 109.49922 * 301.41727 * 16 5 4 38 38 H 1.09003 * 109.58774 * 65.15306 * 17 16 5 39 39 H 1.09000 * 109.58957 * 185.43527 * 17 16 5 40 40 H 0.97001 * 119.99608 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7312 1.2443 5 6 3.5674 -0.8495 1.1690 6 1 4.0058 0.1460 1.0993 7 7 4.0651 -1.5187 2.3734 8 6 5.3292 -1.3050 2.7895 9 8 6.0559 -0.5568 2.1659 10 6 5.8321 -1.9816 4.0061 11 7 5.1507 -2.8294 4.7918 12 7 5.9450 -3.1937 5.7407 13 7 7.0825 -2.6131 5.5807 14 6 8.2461 -2.7740 6.4561 15 7 7.0383 -1.8689 4.5295 16 6 3.9568 -1.6657 -0.0656 17 6 3.4650 -0.9453 -1.3249 18 7 2.0225 -0.6980 -1.1954 19 6 1.1535 -1.1107 -2.1700 20 1 0.1396 -1.3782 -1.9115 21 6 1.5759 -1.1853 -3.4902 22 7 2.6866 -0.5841 -3.8607 23 14 0.5681 -2.1391 -4.7408 24 1 -0.7925 -1.5511 -4.8321 25 1 1.2294 -2.0665 -6.0684 26 1 0.4665 -3.5584 -4.3159 27 1 -0.3634 -1.0277 0.0051 28 1 -0.3634 0.5182 0.8875 29 1 -0.3634 0.5094 -0.8925 30 1 1.6031 -1.7273 1.2889 31 1 1.7657 -0.1700 2.1365 32 1 3.4850 -2.1157 2.8714 33 1 8.8567 -3.6037 6.1000 34 1 8.8370 -1.8581 6.4472 35 1 7.9104 -2.9800 7.4724 36 1 5.0411 -1.7695 -0.1059 37 1 3.4982 -2.6528 -0.0087 38 1 3.9903 0.0038 -1.4317 39 1 3.6540 -1.5679 -2.1994 40 1 2.9815 -0.6360 -4.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947616701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = 93.758958 kcal Electronic energy + Delta-G solvation = -23698.443228 eV Core-core repulsion = 20165.367979 eV Total energy + Delta-G solvation = -3533.075249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.57471 -41.11497 -39.27614 -36.42395 -36.14441 -34.38496 -34.21380 -33.00310 -31.42570 -29.70600 -28.01120 -26.99078 -26.07564 -24.19342 -23.67146 -22.79995 -21.66626 -21.08247 -19.53904 -18.74289 -18.26269 -17.86471 -17.34019 -16.93889 -16.16727 -15.83438 -15.62898 -15.32728 -15.24371 -14.88550 -14.59103 -14.44987 -14.20430 -14.13310 -13.30943 -13.20425 -12.93893 -12.70778 -12.67146 -12.60165 -12.37552 -12.34127 -12.27468 -12.11569 -11.89927 -11.71390 -11.61393 -11.51774 -11.50151 -11.13384 -10.52431 -10.17599 -8.60978 -7.81086 -5.27387 -0.19753 0.22699 0.78609 1.49740 1.52143 1.58186 1.70458 1.86547 2.55424 2.76286 3.04837 3.35604 3.62772 3.83101 3.96359 4.04250 4.06023 4.23361 4.27477 4.40596 4.49714 4.61392 4.63297 4.70644 4.77651 4.80955 4.95885 4.97492 5.06884 5.08871 5.17967 5.36447 5.42516 5.54454 5.59417 5.74334 5.76453 6.24066 6.46542 6.85504 7.00045 7.20474 7.92154 8.45033 9.26367 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003212 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.389300 B = 8714.898861 C = 9008.600591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.161 3.839 3 H 0.016 0.984 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.069 0.931 7 N -0.683 5.683 8 C 0.614 3.386 9 O -0.546 6.546 10 C 0.119 3.881 11 N -0.264 5.264 12 N -0.059 5.059 13 N -0.115 5.115 14 C 0.072 3.928 15 N -0.264 5.264 16 C -0.134 4.134 17 C 0.184 3.816 18 N -0.603 5.603 19 C -0.249 4.249 20 H 0.080 0.920 21 C -0.055 4.055 22 N -0.940 5.940 23 Si 0.963 3.037 24 H -0.274 1.274 25 H -0.301 1.301 26 H -0.278 1.278 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.420 0.580 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.048 0.952 37 H 0.063 0.937 38 H -0.008 1.008 39 H 0.055 0.945 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.981 -5.311 23.295 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.054 3.946 3 H 0.034 0.966 4 C -0.159 4.159 5 C 0.059 3.941 6 H 0.088 0.912 7 N -0.334 5.334 8 C 0.395 3.605 9 O -0.420 6.420 10 C -0.165 4.165 11 N -0.138 5.138 12 N -0.052 5.052 13 N -0.030 5.030 14 C -0.064 4.064 15 N -0.120 5.120 16 C -0.174 4.174 17 C 0.058 3.942 18 N -0.327 5.327 19 C -0.379 4.379 20 H 0.097 0.903 21 C -0.250 4.250 22 N -0.587 5.587 23 Si 0.791 3.209 24 H -0.199 1.199 25 H -0.227 1.227 26 H -0.204 1.204 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.258 0.742 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.561 -5.130 23.228 24.961 hybrid contribution -0.148 -0.244 -1.437 1.465 sum 7.413 -5.373 21.792 23.637 Atomic orbital electron populations 1.21715 0.93856 1.01734 1.01170 1.20633 0.94740 0.93017 0.86181 0.96643 1.22230 0.91824 1.02622 0.99236 1.20896 0.95495 0.95531 0.82224 0.91241 1.45800 1.11678 1.47716 1.28199 1.16317 0.82772 0.80504 0.80945 1.90850 1.57207 1.37746 1.56226 1.25051 0.89170 1.01561 1.00714 1.76094 1.24682 1.11687 1.01346 1.78842 0.91312 1.16969 1.18093 1.50828 1.12920 1.23371 1.15894 1.23280 0.81560 1.08231 0.93364 1.75073 1.21000 1.15188 1.00703 1.22360 0.99370 0.99749 0.95925 1.20430 0.83702 0.95598 0.94508 1.44421 1.02618 1.65684 1.19973 1.19504 0.95697 1.36251 0.86489 0.90276 1.25863 0.99144 1.00989 0.99020 1.70185 1.26083 1.45811 1.16584 0.85409 0.78369 0.79101 0.77986 1.19944 1.22716 1.20434 0.92626 0.90412 0.94115 0.90402 0.88902 0.74242 0.85262 0.85076 0.83662 0.93314 0.91803 0.98986 0.92684 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 7.95 71.98 0.57 -3.78 16 2 C 0.16 6.29 3.50 44.97 0.16 6.45 16 3 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.12 -3.68 4.84 30.67 0.15 -3.53 16 5 C 0.16 5.53 2.42 45.02 0.11 5.64 16 6 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 7 N -0.68 -19.68 5.07 -445.13 -2.26 -21.93 16 8 C 0.61 19.91 7.80 86.83 0.68 20.59 16 9 O -0.55 -21.80 16.76 -3.80 -0.06 -21.87 16 10 C 0.12 3.36 8.14 137.16 1.12 4.47 16 11 N -0.26 -6.72 12.26 -52.37 -0.64 -7.36 16 12 N -0.06 -1.24 13.23 37.02 0.49 -0.75 16 13 N -0.11 -1.99 4.39 -206.59 -0.91 -2.90 16 14 C 0.07 0.21 11.62 127.77 1.49 1.70 16 15 N -0.26 -6.70 12.17 -52.32 -0.64 -7.34 16 16 C -0.13 -5.37 5.65 30.67 0.17 -5.19 16 17 C 0.18 9.20 5.28 86.36 0.46 9.66 16 18 N -0.60 -29.61 2.99 -675.26 -2.02 -31.62 16 19 C -0.25 -13.26 8.57 84.03 0.72 -12.54 16 20 H 0.08 3.99 6.24 -2.91 -0.02 3.97 16 21 C -0.06 -3.09 4.94 84.86 0.42 -2.67 16 22 N -0.94 -56.63 11.23 21.65 0.24 -56.39 16 23 Si 0.96 44.96 29.58 68.60 2.03 46.99 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H 0.05 1.88 7.44 -2.38 -0.02 1.86 16 28 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.04 1.56 7.63 -2.39 -0.02 1.54 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 32 H 0.42 9.93 8.35 -92.71 -0.77 9.15 16 33 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.05 3.11 6.15 -2.39 -0.01 3.09 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -75.30 332.81 2.57 -72.73 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.29 Total: 9.65 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 6.03 Total: 20.78 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.73 Total: -128.29 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -75.30 2.57 -72.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947616701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.493 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds