Wall clock time and date at job start Fri Apr 10 2020 17:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34503 * 126.47657 * 2 1 4 4 N 1.30855 * 109.16755 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.68275 * 359.76090 * 4 3 2 6 6 C 1.36665 * 107.78581 * 0.38078 * 5 4 3 7 7 C 1.46765 * 126.84237 * 179.88903 * 6 5 4 8 8 O 1.21688 * 120.00036 * 185.00380 * 7 6 5 9 9 N 1.34773 * 120.00384 * 5.01374 * 7 6 5 10 10 C 1.46497 * 120.00498 * 174.76853 * 9 7 6 11 11 C 1.53002 * 109.47626 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.63925 * 303.31846 * 11 10 9 13 13 C 1.54326 * 110.71683 * 66.45371 * 11 10 9 14 14 N 1.47020 * 107.27041 * 140.73909 * 13 11 10 15 15 C 1.36938 * 125.64752 * 181.02364 * 14 13 11 16 16 H 1.07997 * 119.99749 * 10.17455 * 15 14 13 17 17 C 1.38811 * 119.99913 * 190.17164 * 15 14 13 18 18 N 1.31624 * 119.99898 * 29.99406 * 17 15 14 19 19 Si 1.86797 * 120.00070 * 209.99962 * 17 15 14 20 20 H 1.48496 * 109.47207 * 59.99695 * 19 17 15 21 21 H 1.48504 * 109.47052 * 299.99883 * 19 17 15 22 22 H 1.48499 * 109.47215 * 180.02562 * 19 17 15 23 23 C 1.47420 * 108.70278 * 1.28227 * 14 13 11 24 24 C 1.55132 * 104.72279 * 335.55825 * 23 14 13 25 25 H 1.08998 * 110.90704 * 155.27387 * 24 23 14 26 26 O 1.42896 * 111.22263 * 279.16997 * 24 23 14 27 27 H 1.09000 * 109.47317 * 273.57256 * 1 2 3 28 28 H 1.09001 * 109.46718 * 33.56636 * 1 2 3 29 29 H 1.08998 * 109.47133 * 153.56717 * 1 2 3 30 30 H 1.08001 * 125.41119 * 0.04122 * 3 2 1 31 31 H 1.08004 * 126.10780 * 180.27162 * 5 4 3 32 32 H 0.97006 * 119.99627 * 354.76166 * 9 7 6 33 33 H 1.09007 * 109.47195 * 59.99580 * 10 9 7 34 34 H 1.09000 * 109.47337 * 299.99888 * 10 9 7 35 35 H 1.08996 * 109.88388 * 21.31777 * 13 11 10 36 36 H 1.09007 * 110.00949 * 260.22320 * 13 11 10 37 37 H 0.96999 * 119.99840 * 5.58371 * 18 17 15 38 38 H 1.08998 * 110.36664 * 94.48891 * 23 14 13 39 39 H 1.09004 * 110.37082 * 216.80820 * 23 14 13 40 40 H 0.96698 * 114.00912 * 292.20857 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2646 1.0815 0.0000 4 7 3.5139 0.6922 -0.0006 5 6 3.5691 -0.6398 0.0043 6 6 2.2862 -1.1109 -0.0005 7 6 1.8649 -2.5167 -0.0001 8 8 0.6850 -2.7984 -0.0967 9 7 2.7847 -3.4959 0.1075 10 6 2.3578 -4.8925 0.2234 11 6 3.5887 -5.7949 0.3302 12 1 4.2484 -5.6478 -0.5249 13 6 4.3423 -5.5363 1.6519 14 7 4.7986 -6.8396 2.1565 15 6 5.4909 -7.0472 3.3196 16 1 5.6035 -6.2432 4.0318 17 6 6.0479 -8.2910 3.5832 18 7 6.4462 -9.0575 2.5901 19 14 6.2320 -8.8771 5.3473 20 1 4.8949 -8.9391 5.9903 21 1 7.0977 -7.9305 6.0956 22 1 6.8504 -10.2271 5.3584 23 6 4.3930 -7.8852 1.1997 24 6 3.1730 -7.2846 0.4530 25 1 3.0561 -7.7400 -0.5304 26 8 1.9770 -7.4210 1.2229 27 1 -0.3634 0.0640 1.0257 28 1 -0.3633 0.8563 -0.5682 29 1 -0.3633 -0.9202 -0.4575 30 1 1.9288 2.1080 0.0006 31 1 4.4673 -1.2396 0.0092 32 1 3.7294 -3.2758 0.1082 33 1 1.7796 -5.1701 -0.6580 34 1 1.7414 -5.0113 1.1145 35 1 3.6724 -5.0724 2.3759 36 1 5.1996 -4.8877 1.4717 37 1 6.4260 -8.7220 1.6802 38 1 5.2029 -8.0948 0.5009 39 1 4.1037 -8.7928 1.7296 40 1 1.6781 -8.3347 1.3270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958227316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:19 Heat of formation + Delta-G solvation = 7.317495 kcal Electronic energy + Delta-G solvation = -23645.403884 eV Core-core repulsion = 20076.287500 eV Total energy + Delta-G solvation = -3569.116383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.40735 -39.52701 -38.39068 -35.22233 -34.86863 -34.12866 -32.42595 -30.68532 -29.22753 -27.96117 -27.34908 -25.44799 -24.00375 -22.70436 -21.55257 -20.69438 -20.09293 -19.68149 -18.12037 -17.73118 -16.90164 -16.32426 -16.19041 -15.77016 -15.05147 -14.59392 -14.41015 -14.38118 -14.16162 -13.72098 -13.65631 -13.39321 -13.23563 -13.14834 -12.97900 -12.53174 -12.25713 -11.60058 -11.06006 -10.78908 -10.72119 -10.63224 -10.49691 -10.36045 -10.01602 -9.99850 -9.91557 -9.70690 -9.35562 -9.15966 -8.78050 -8.41346 -6.98379 -6.14722 -3.10820 1.12128 2.25904 2.64231 3.18524 3.25799 3.50137 3.54953 3.72179 4.29185 4.43928 4.48600 4.58063 4.59812 4.85654 4.90184 4.95118 5.12044 5.14522 5.19203 5.25998 5.28735 5.50853 5.66655 5.78639 5.88131 5.88840 6.15660 6.20563 6.22678 6.37115 6.49549 6.68494 6.77033 6.81096 6.87012 7.38144 7.65279 7.72334 8.04114 8.08533 8.45135 8.98206 9.79216 10.32388 11.19939 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.003404 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.388462 B = 8224.321109 C = 8841.076729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.428 5.428 3 C 0.202 3.798 4 N -0.497 5.497 5 C 0.038 3.962 6 C -0.084 4.084 7 C 0.593 3.407 8 O -0.550 6.550 9 N -0.712 5.712 10 C 0.144 3.856 11 C -0.107 4.107 12 H 0.089 0.911 13 C 0.146 3.854 14 N -0.597 5.597 15 C -0.335 4.335 16 H 0.068 0.932 17 C -0.025 4.025 18 N -0.919 5.919 19 Si 1.060 2.940 20 H -0.294 1.294 21 H -0.293 1.293 22 H -0.286 1.286 23 C 0.118 3.882 24 C 0.093 3.907 25 H 0.061 0.939 26 O -0.554 6.554 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.212 0.788 31 H 0.179 0.821 32 H 0.403 0.597 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.031 0.969 36 H 0.022 0.978 37 H 0.267 0.733 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 14.765 -8.527 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.109 5.109 3 C -0.080 4.080 4 N -0.215 5.215 5 C -0.117 4.117 6 C -0.201 4.201 7 C 0.380 3.620 8 O -0.429 6.429 9 N -0.362 5.362 10 C 0.021 3.979 11 C -0.127 4.127 12 H 0.108 0.892 13 C 0.020 3.980 14 N -0.324 5.324 15 C -0.462 4.462 16 H 0.086 0.914 17 C -0.226 4.226 18 N -0.561 5.561 19 Si 0.890 3.110 20 H -0.221 1.221 21 H -0.220 1.220 22 H -0.211 1.211 23 C -0.008 4.008 24 C 0.032 3.968 25 H 0.079 0.921 26 O -0.359 6.359 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.228 0.772 31 H 0.197 0.803 32 H 0.238 0.762 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.732 14.425 -7.487 19.476 hybrid contribution -0.619 0.425 -0.925 1.191 sum -11.350 14.850 -8.412 20.497 Atomic orbital electron populations 1.22338 0.75288 1.06006 1.04208 1.45262 1.08340 1.05790 1.51463 1.25149 0.85614 0.93626 1.03633 1.70158 1.19002 1.12165 1.20144 1.22697 0.95290 0.91337 1.02330 1.20840 0.91557 0.88998 1.18730 1.16736 0.85590 0.83080 0.76623 1.90770 1.17042 1.83990 1.51091 1.45737 1.09662 1.07020 1.73785 1.21250 0.96434 0.77362 1.02866 1.22525 0.96173 0.94032 0.99939 0.89243 1.21314 0.95228 0.89829 0.91646 1.44402 1.64836 0.99883 1.23330 1.19753 1.32105 1.00330 0.94020 0.91429 1.25661 0.96929 0.94367 1.05672 1.70824 1.42699 1.41485 1.01055 0.83589 0.76070 0.76243 0.75120 1.22148 1.22027 1.21122 1.22271 0.92732 0.93544 0.92301 1.23003 0.86009 0.94637 0.93102 0.92130 1.86426 1.41881 1.31962 1.75678 0.90137 0.89482 0.87338 0.77151 0.80345 0.76192 0.91393 0.89885 0.95112 0.96048 0.92145 0.95107 0.92246 0.77714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.83 59.84 0.65 1.13 16 2 N -0.43 -4.47 3.17 -121.98 -0.39 -4.86 16 3 C 0.20 1.92 12.52 -90.57 -1.13 0.78 16 4 N -0.50 -6.08 11.20 -14.42 -0.16 -6.24 16 5 C 0.04 0.45 11.37 -17.47 -0.20 0.25 16 6 C -0.08 -1.05 6.91 -82.14 -0.57 -1.62 16 7 C 0.59 8.37 7.78 -12.82 -0.10 8.27 16 8 O -0.55 -9.09 14.80 5.20 0.08 -9.01 16 9 N -0.71 -9.29 5.39 -61.59 -0.33 -9.63 16 10 C 0.14 2.12 4.60 -4.04 -0.02 2.11 16 11 C -0.11 -1.71 2.93 -88.79 -0.26 -1.97 16 12 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 13 C 0.15 2.94 6.52 -3.06 -0.02 2.92 16 14 N -0.60 -14.90 3.35 -169.93 -0.57 -15.47 16 15 C -0.33 -9.46 10.03 -15.06 -0.15 -9.61 16 16 H 0.07 1.92 7.99 -52.49 -0.42 1.50 16 17 C -0.03 -0.72 5.04 -17.43 -0.09 -0.81 16 18 N -0.92 -27.33 12.76 55.49 0.71 -26.63 16 19 Si 1.06 25.40 30.01 -169.99 -5.10 20.29 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 C 0.12 2.60 4.97 -2.41 -0.01 2.59 16 24 C 0.09 1.58 4.17 -24.47 -0.10 1.48 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 O -0.55 -9.41 12.25 -35.23 -0.43 -9.84 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.11 1.06 6.21 -51.93 -0.32 0.73 16 30 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.18 1.70 7.46 -52.48 -0.39 1.31 16 32 H 0.40 4.49 7.27 -40.82 -0.30 4.19 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.44 7.45 -51.93 -0.39 1.05 16 35 H 0.03 0.66 7.77 -51.93 -0.40 0.25 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.27 7.88 5.96 -40.82 -0.24 7.63 16 38 H 0.03 0.72 6.95 -51.93 -0.36 0.36 16 39 H 0.06 1.45 7.60 -51.93 -0.39 1.06 16 40 H 0.38 5.00 9.12 45.56 0.42 5.42 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -36.36 332.61 -7.75 -44.11 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.56 Total: 6.75 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.00 Total: 5.51 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.74 Total: -62.83 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.35 Total: -18.85 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.10 Total: 20.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.36 -7.75 -44.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958227316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.429 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds