Wall clock time and date at job start Fri Apr 10 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34503 * 126.47657 * 2 1 4 4 N 1.30855 * 109.16755 * 180.02562 * 3 2 1 5 5 C 1.33320 * 109.68275 * 359.76090 * 4 3 2 6 6 C 1.36665 * 107.78581 * 0.38078 * 5 4 3 7 7 C 1.46765 * 126.84237 * 179.88903 * 6 5 4 8 8 O 1.21688 * 120.00036 * 185.00380 * 7 6 5 9 9 N 1.34773 * 120.00384 * 5.01374 * 7 6 5 10 10 C 1.46497 * 120.00498 * 174.76853 * 9 7 6 11 11 C 1.53002 * 109.47626 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.63925 * 303.31846 * 11 10 9 13 13 C 1.54326 * 110.71683 * 66.45371 * 11 10 9 14 14 N 1.47020 * 107.27041 * 140.73909 * 13 11 10 15 15 C 1.36938 * 125.64752 * 181.02364 * 14 13 11 16 16 H 1.07997 * 119.99749 * 10.17455 * 15 14 13 17 17 C 1.38811 * 119.99913 * 190.17164 * 15 14 13 18 18 N 1.31624 * 119.99898 * 29.99406 * 17 15 14 19 19 Si 1.86797 * 120.00070 * 209.99962 * 17 15 14 20 20 H 1.48496 * 109.47207 * 59.99695 * 19 17 15 21 21 H 1.48504 * 109.47052 * 299.99883 * 19 17 15 22 22 H 1.48499 * 109.47215 * 180.02562 * 19 17 15 23 23 C 1.47420 * 108.70278 * 1.28227 * 14 13 11 24 24 C 1.55132 * 104.72279 * 335.55825 * 23 14 13 25 25 H 1.08998 * 110.90704 * 155.27387 * 24 23 14 26 26 O 1.42896 * 111.22263 * 279.16997 * 24 23 14 27 27 H 1.09000 * 109.47317 * 273.57256 * 1 2 3 28 28 H 1.09001 * 109.46718 * 33.56636 * 1 2 3 29 29 H 1.08998 * 109.47133 * 153.56717 * 1 2 3 30 30 H 1.08001 * 125.41119 * 0.04122 * 3 2 1 31 31 H 1.08004 * 126.10780 * 180.27162 * 5 4 3 32 32 H 0.97006 * 119.99627 * 354.76166 * 9 7 6 33 33 H 1.09007 * 109.47195 * 59.99580 * 10 9 7 34 34 H 1.09000 * 109.47337 * 299.99888 * 10 9 7 35 35 H 1.08996 * 109.88388 * 21.31777 * 13 11 10 36 36 H 1.09007 * 110.00949 * 260.22320 * 13 11 10 37 37 H 0.96999 * 119.99840 * 5.58371 * 18 17 15 38 38 H 1.08998 * 110.36664 * 94.48891 * 23 14 13 39 39 H 1.09004 * 110.37082 * 216.80820 * 23 14 13 40 40 H 0.96698 * 114.00912 * 292.20857 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2646 1.0815 0.0000 4 7 3.5139 0.6922 -0.0006 5 6 3.5691 -0.6398 0.0043 6 6 2.2862 -1.1109 -0.0005 7 6 1.8649 -2.5167 -0.0001 8 8 0.6850 -2.7984 -0.0967 9 7 2.7847 -3.4959 0.1075 10 6 2.3578 -4.8925 0.2234 11 6 3.5887 -5.7949 0.3302 12 1 4.2484 -5.6478 -0.5249 13 6 4.3423 -5.5363 1.6519 14 7 4.7986 -6.8396 2.1565 15 6 5.4909 -7.0472 3.3196 16 1 5.6035 -6.2432 4.0318 17 6 6.0479 -8.2910 3.5832 18 7 6.4462 -9.0575 2.5901 19 14 6.2320 -8.8771 5.3473 20 1 4.8949 -8.9391 5.9903 21 1 7.0977 -7.9305 6.0956 22 1 6.8504 -10.2271 5.3584 23 6 4.3930 -7.8852 1.1997 24 6 3.1730 -7.2846 0.4530 25 1 3.0561 -7.7400 -0.5304 26 8 1.9770 -7.4210 1.2229 27 1 -0.3634 0.0640 1.0257 28 1 -0.3633 0.8563 -0.5682 29 1 -0.3633 -0.9202 -0.4575 30 1 1.9288 2.1080 0.0006 31 1 4.4673 -1.2396 0.0092 32 1 3.7294 -3.2758 0.1082 33 1 1.7796 -5.1701 -0.6580 34 1 1.7414 -5.0113 1.1145 35 1 3.6724 -5.0724 2.3759 36 1 5.1996 -4.8877 1.4717 37 1 6.4260 -8.7220 1.6802 38 1 5.2029 -8.0948 0.5009 39 1 4.1037 -8.7928 1.7296 40 1 1.6781 -8.3347 1.3270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958227316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:18 Heat of formation + Delta-G solvation = -20.777113 kcal Electronic energy + Delta-G solvation = -23646.622157 eV Core-core repulsion = 20076.287500 eV Total energy + Delta-G solvation = -3570.334657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.22200 -40.74483 -39.79910 -36.55120 -36.36345 -34.98629 -34.10192 -31.98253 -30.60643 -29.54802 -28.01288 -27.06557 -25.57450 -23.83471 -22.43627 -22.18632 -21.45344 -20.87899 -19.70800 -19.01778 -18.32164 -17.28950 -17.06140 -16.83105 -16.39440 -16.20589 -15.81478 -15.60216 -15.37771 -15.15369 -15.04231 -14.70223 -14.39980 -14.07456 -13.90007 -13.81193 -13.61272 -13.18308 -12.75365 -12.55578 -12.37358 -12.20083 -11.92028 -11.83785 -11.65616 -11.45587 -10.98067 -10.89333 -10.75863 -10.51226 -10.26291 -9.66311 -9.01654 -8.36464 -5.28092 0.23365 1.45571 1.56392 1.63593 1.80245 1.83059 2.22868 2.28151 2.62116 3.13591 3.20278 3.43343 3.50782 3.73754 3.77551 3.81950 3.85315 3.94417 4.05723 4.29470 4.35374 4.38407 4.42896 4.53627 4.68884 4.69090 4.81857 4.88420 5.02335 5.09335 5.10512 5.22468 5.30552 5.41355 5.62944 6.07663 6.30459 6.35453 6.82620 6.84077 6.91681 7.03990 7.70048 8.26841 8.98489 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.003404 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.388462 B = 8224.321109 C = 8841.076729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.433 5.433 3 C 0.219 3.781 4 N -0.532 5.532 5 C 0.039 3.961 6 C -0.112 4.112 7 C 0.594 3.406 8 O -0.579 6.579 9 N -0.705 5.705 10 C 0.159 3.841 11 C -0.092 4.092 12 H 0.118 0.882 13 C 0.143 3.857 14 N -0.622 5.622 15 C -0.348 4.348 16 H 0.057 0.943 17 C -0.074 4.074 18 N -0.943 5.943 19 Si 1.110 2.890 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.289 1.289 23 C 0.118 3.882 24 C 0.106 3.894 25 H 0.102 0.898 26 O -0.566 6.566 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.256 0.744 31 H 0.193 0.807 32 H 0.413 0.587 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.258 0.742 38 H 0.020 0.980 39 H 0.027 0.973 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 16.436 -9.201 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.113 5.113 3 C -0.063 4.063 4 N -0.250 5.250 5 C -0.116 4.116 6 C -0.229 4.229 7 C 0.381 3.619 8 O -0.461 6.461 9 N -0.356 5.356 10 C 0.036 3.964 11 C -0.111 4.111 12 H 0.136 0.864 13 C 0.018 3.982 14 N -0.349 5.349 15 C -0.476 4.476 16 H 0.075 0.925 17 C -0.270 4.270 18 N -0.587 5.587 19 Si 0.935 3.065 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.215 1.215 23 C -0.008 4.008 24 C 0.046 3.954 25 H 0.119 0.881 26 O -0.374 6.374 27 H 0.105 0.895 28 H 0.144 0.856 29 H 0.103 0.897 30 H 0.272 0.728 31 H 0.210 0.790 32 H 0.250 0.750 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.573 16.115 -8.174 21.458 hybrid contribution -0.384 0.008 -0.711 0.808 sum -11.957 16.123 -8.885 21.951 Atomic orbital electron populations 1.22487 0.73821 1.06506 1.05099 1.45506 1.09323 1.05393 1.51056 1.26038 0.84767 0.94946 1.00520 1.70188 1.20690 1.12225 1.21881 1.23004 0.95639 0.91670 1.01272 1.20694 0.92328 0.88750 1.21127 1.16962 0.85157 0.83873 0.75868 1.90753 1.18196 1.84547 1.52602 1.45611 1.10186 1.06317 1.73518 1.20946 0.95369 0.78048 1.02059 1.22470 0.96460 0.93697 0.98434 0.86434 1.21419 0.95408 0.87955 0.93398 1.44674 1.64494 1.02455 1.23306 1.19975 1.32013 1.00302 0.95343 0.92521 1.26933 0.96899 0.94726 1.08483 1.70918 1.44767 1.41964 1.01016 0.82918 0.76588 0.75807 0.71236 1.21199 1.20215 1.21481 1.22284 0.94639 0.92225 0.91631 1.22954 0.83764 0.94862 0.93827 0.88066 1.86410 1.41405 1.33588 1.75958 0.89488 0.85628 0.89709 0.72810 0.79028 0.75036 0.90304 0.92577 0.96626 0.95488 0.93182 0.96268 0.95439 0.75957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 10.83 127.77 1.38 2.21 16 2 N -0.43 -8.21 3.17 -539.82 -1.71 -9.92 16 3 C 0.22 3.55 12.52 180.33 2.26 5.81 16 4 N -0.53 -12.01 11.20 -199.55 -2.24 -14.24 16 5 C 0.04 0.87 11.37 84.10 0.96 1.83 16 6 C -0.11 -2.69 6.91 40.01 0.28 -2.41 16 7 C 0.59 16.39 7.78 86.47 0.67 17.07 16 8 O -0.58 -19.06 14.80 -4.31 -0.06 -19.13 16 9 N -0.71 -17.69 5.39 -466.99 -2.52 -20.21 16 10 C 0.16 4.50 4.60 86.38 0.40 4.89 16 11 C -0.09 -2.76 2.93 -9.61 -0.03 -2.79 16 12 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 13 C 0.14 5.75 6.52 86.73 0.57 6.32 16 14 N -0.62 -31.46 3.35 -691.55 -2.31 -33.78 16 15 C -0.35 -20.04 10.03 84.03 0.84 -19.20 16 16 H 0.06 3.29 7.99 -2.91 -0.02 3.27 16 17 C -0.07 -4.29 5.04 84.86 0.43 -3.86 16 18 N -0.94 -57.25 12.76 21.65 0.28 -56.97 16 19 Si 1.11 51.78 30.01 68.60 2.06 53.84 16 20 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 C 0.12 5.27 4.97 86.93 0.43 5.70 16 24 C 0.11 3.44 4.17 32.06 0.13 3.58 16 25 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 26 O -0.57 -18.57 12.25 -148.98 -1.82 -20.40 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 1.60 6.21 -2.39 -0.01 1.58 16 30 H 0.26 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.19 3.44 7.46 -2.91 -0.02 3.42 16 32 H 0.41 8.65 7.27 -92.70 -0.67 7.98 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.06 1.92 7.45 -2.39 -0.02 1.91 16 35 H 0.02 0.68 7.77 -2.39 -0.02 0.66 16 36 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.26 15.62 5.96 -92.71 -0.55 15.07 16 38 H 0.02 0.91 6.95 -2.39 -0.02 0.90 16 39 H 0.03 1.37 7.60 -2.38 -0.02 1.36 16 40 H 0.39 9.98 9.12 -74.06 -0.68 9.30 16 Total: -1.00 -80.78 332.61 -0.06 -80.85 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.05 Total: 20.82 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 8.32 Total: 19.13 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -8.50 Total: -135.12 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.89 Total: -39.52 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.06 Total: 53.84 kcal Total: -80.78 -0.06 -80.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958227316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.069 kcal (2) G-P(sol) polarization free energy of solvation -80.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds