Wall clock time and date at job start Fri Apr 10 2020 17:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34491 * 126.47314 * 2 1 4 4 N 1.30860 * 109.16788 * 180.02562 * 3 2 1 5 5 C 1.33324 * 109.67947 * 359.76269 * 4 3 2 6 6 C 1.36660 * 107.78486 * 0.37681 * 5 4 3 7 7 C 1.46763 * 126.83982 * 179.89656 * 6 5 4 8 8 O 1.21689 * 119.99723 * 185.01844 * 7 6 5 9 9 N 1.34774 * 120.00427 * 5.01800 * 7 6 5 10 10 C 1.46503 * 120.00087 * 174.54533 * 9 7 6 11 11 C 1.53000 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.78316 * 56.78283 * 11 10 9 13 13 C 1.54333 * 110.72174 * 293.54754 * 11 10 9 14 14 N 1.47012 * 107.27124 * 219.44719 * 13 11 10 15 15 C 1.36940 * 125.65091 * 178.90745 * 14 13 11 16 16 H 1.08004 * 119.99523 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00678 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00240 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47215 * 90.00031 * 19 17 15 21 21 H 1.48505 * 109.47263 * 210.00154 * 19 17 15 22 22 H 1.48498 * 109.47222 * 329.99841 * 19 17 15 23 23 C 1.47425 * 108.70749 * 358.93664 * 14 13 11 24 24 C 1.54905 * 104.82902 * 24.13185 * 23 14 13 25 25 H 1.09005 * 111.00491 * 204.91820 * 24 23 14 26 26 O 1.42902 * 111.00767 * 81.06415 * 24 23 14 27 27 H 1.08999 * 109.46706 * 271.86756 * 1 2 3 28 28 H 1.09000 * 109.47260 * 31.86951 * 1 2 3 29 29 H 1.08997 * 109.47199 * 151.87014 * 1 2 3 30 30 H 1.08003 * 125.41899 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.10363 * 180.28161 * 5 4 3 32 32 H 0.97000 * 119.99772 * 354.55477 * 9 7 6 33 33 H 1.09000 * 109.46939 * 60.00877 * 10 9 7 34 34 H 1.09000 * 109.47150 * 299.99913 * 10 9 7 35 35 H 1.09004 * 109.87517 * 338.86354 * 13 11 10 36 36 H 1.08994 * 109.88113 * 100.02312 * 13 11 10 37 37 H 0.96993 * 120.00146 * 179.97438 * 18 17 15 38 38 H 1.08996 * 110.36711 * 142.96644 * 23 14 13 39 39 H 1.08999 * 110.36546 * 265.18514 * 23 14 13 40 40 H 0.96699 * 113.99516 * 67.80171 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 -0.0006 5 6 3.5691 -0.6399 0.0043 6 6 2.2862 -1.1108 -0.0005 7 6 1.8650 -2.5167 0.0001 8 8 0.6851 -2.7984 -0.0968 9 7 2.7848 -3.4959 0.1079 10 6 2.3578 -4.8920 0.2288 11 6 3.5887 -5.7944 0.3360 12 1 4.2149 -5.4960 1.1768 13 6 4.3958 -5.7756 -0.9794 14 7 4.8635 -7.1477 -1.2241 15 6 5.5989 -7.5597 -2.3033 16 1 5.8826 -6.8497 -3.0661 17 6 5.9798 -8.8896 -2.4168 18 7 5.6345 -9.7548 -1.4869 19 14 6.9824 -9.4517 -3.8893 20 1 8.4293 -9.3219 -3.5817 21 1 6.6658 -10.8708 -4.1912 22 1 6.6490 -8.6092 -5.0659 23 6 4.4092 -8.0069 -0.1156 24 6 3.1690 -7.2825 0.4648 25 1 3.0104 -7.5547 1.5084 26 8 2.0040 -7.5556 -0.3164 27 1 -0.3633 0.0335 1.0271 28 1 -0.3634 0.8727 -0.5426 29 1 -0.3633 -0.9062 -0.4845 30 1 1.9288 2.1080 -0.0004 31 1 4.4673 -1.2395 0.0093 32 1 3.7296 -3.2761 0.1055 33 1 1.7773 -5.1718 -0.6503 34 1 1.7438 -5.0081 1.1219 35 1 3.7579 -5.4493 -1.8009 36 1 5.2492 -5.1049 -0.8810 37 1 5.9003 -10.6842 -1.5664 38 1 4.1324 -8.9929 -0.4888 39 1 5.1887 -8.0935 0.6413 40 1 1.7039 -8.4735 -0.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958227317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:21 Heat of formation + Delta-G solvation = 10.305122 kcal Electronic energy + Delta-G solvation = -23604.225789 eV Core-core repulsion = 20035.238959 eV Total energy + Delta-G solvation = -3568.986830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38256 -39.43138 -38.17335 -35.10695 -34.60251 -34.07341 -32.27331 -30.66253 -29.25771 -27.67934 -27.32845 -25.58125 -23.99892 -22.63618 -21.52193 -20.61219 -20.01862 -19.52032 -18.05068 -17.32176 -16.54753 -16.17761 -16.15177 -15.67256 -14.95920 -14.84352 -14.37090 -14.21034 -14.09595 -13.80914 -13.56117 -13.30206 -13.09605 -12.97221 -12.69273 -12.34509 -11.95963 -11.39809 -11.25461 -10.81903 -10.66955 -10.59263 -10.37153 -10.20244 -10.03170 -9.95710 -9.84684 -9.79853 -9.13315 -9.08415 -8.74279 -8.68370 -6.85002 -5.69530 -3.09424 1.15448 2.29350 2.66717 3.26233 3.28082 3.39051 3.44382 3.46171 4.31584 4.45647 4.49325 4.59337 4.73128 4.89101 4.91555 5.11160 5.18199 5.29338 5.31324 5.38201 5.50521 5.58961 5.86681 5.88269 6.02269 6.10339 6.24920 6.32073 6.40337 6.45841 6.62361 6.79239 6.84483 7.27244 7.44828 7.57307 7.67801 7.74681 8.13585 8.22371 8.36030 9.18217 9.79613 10.43268 11.35458 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.003349 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.032593 B = 8359.252097 C = 9076.312331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.428 5.428 3 C 0.201 3.799 4 N -0.497 5.497 5 C 0.037 3.963 6 C -0.083 4.083 7 C 0.592 3.408 8 O -0.549 6.549 9 N -0.711 5.711 10 C 0.143 3.857 11 C -0.107 4.107 12 H 0.087 0.913 13 C 0.144 3.856 14 N -0.598 5.598 15 C -0.218 4.218 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.926 5.926 19 Si 0.916 3.084 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.126 3.874 24 C 0.083 3.917 25 H 0.055 0.945 26 O -0.558 6.558 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.212 0.788 31 H 0.180 0.820 32 H 0.403 0.597 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.020 0.980 37 H 0.252 0.748 38 H 0.112 0.888 39 H 0.020 0.980 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 16.294 6.755 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.109 5.109 3 C -0.081 4.081 4 N -0.215 5.215 5 C -0.118 4.118 6 C -0.200 4.200 7 C 0.378 3.622 8 O -0.428 6.428 9 N -0.361 5.361 10 C 0.020 3.980 11 C -0.126 4.126 12 H 0.105 0.895 13 C 0.018 3.982 14 N -0.323 5.323 15 C -0.347 4.347 16 H 0.096 0.904 17 C -0.207 4.207 18 N -0.575 5.575 19 Si 0.746 3.254 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.001 3.999 24 C 0.022 3.978 25 H 0.073 0.927 26 O -0.363 6.363 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.228 0.772 31 H 0.197 0.803 32 H 0.238 0.762 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.129 0.871 39 H 0.037 0.963 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.373 17.036 6.458 20.488 hybrid contribution 0.346 -1.212 -0.529 1.367 sum -9.027 15.824 5.928 19.158 Atomic orbital electron populations 1.22323 0.75299 1.05950 1.04173 1.45260 1.08334 1.05808 1.51468 1.25136 0.85635 0.93614 1.03746 1.70158 1.18994 1.12191 1.20167 1.22699 0.95317 0.91310 1.02427 1.20873 0.91538 0.89041 1.18554 1.16748 0.85664 0.83062 0.76732 1.90776 1.17108 1.83989 1.50975 1.45769 1.09589 1.07092 1.73696 1.21291 0.96590 0.77203 1.02894 1.22526 0.95838 0.94354 0.99928 0.89464 1.21320 0.94674 0.88981 0.93259 1.44336 1.62263 1.02412 1.23319 1.19094 1.24397 0.93203 0.97964 0.90450 1.24760 1.01320 0.95958 0.98697 1.69742 1.50800 1.02878 1.34087 0.86049 0.79693 0.77818 0.81817 1.21647 1.21670 1.20685 1.22588 0.90603 0.97397 0.89344 1.23196 0.87789 0.94007 0.92815 0.92741 1.86389 1.44876 1.32798 1.72250 0.90219 0.89458 0.87381 0.77194 0.80314 0.76232 0.89776 0.91648 0.95334 0.96185 0.93759 0.87066 0.96259 0.77790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.79 59.85 0.65 1.14 16 2 N -0.43 -4.47 3.17 -121.98 -0.39 -4.85 16 3 C 0.20 1.89 12.52 -90.57 -1.13 0.76 16 4 N -0.50 -6.04 11.20 -14.43 -0.16 -6.20 16 5 C 0.04 0.43 11.37 -17.47 -0.20 0.23 16 6 C -0.08 -1.04 6.91 -82.15 -0.57 -1.61 16 7 C 0.59 8.47 7.78 -12.82 -0.10 8.37 16 8 O -0.55 -9.29 14.83 5.20 0.08 -9.21 16 9 N -0.71 -9.45 5.39 -61.59 -0.33 -9.78 16 10 C 0.14 2.18 4.59 -4.04 -0.02 2.16 16 11 C -0.11 -1.76 2.95 -88.78 -0.26 -2.02 16 12 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 13 C 0.14 2.90 6.52 -3.06 -0.02 2.88 16 14 N -0.60 -14.98 3.39 -170.08 -0.58 -15.56 16 15 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 16 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 18 N -0.93 -26.39 10.09 55.49 0.56 -25.83 16 19 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.13 2.91 5.62 -2.53 -0.01 2.89 16 24 C 0.08 1.48 4.17 -24.58 -0.10 1.38 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 O -0.56 -10.08 12.22 -35.23 -0.43 -10.51 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.11 1.08 6.30 -51.93 -0.33 0.75 16 30 H 0.21 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.18 1.68 7.46 -52.49 -0.39 1.29 16 32 H 0.40 4.52 7.27 -40.82 -0.30 4.22 16 33 H 0.08 1.52 7.44 -51.93 -0.39 1.13 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.61 7.77 -51.93 -0.40 0.21 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.11 2.89 5.88 -51.93 -0.31 2.58 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.38 5.53 9.12 45.56 0.42 5.94 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -34.93 332.57 -7.91 -42.84 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.62 Total: 7.58 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -2.02 Total: 9.55 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.90 Total: -62.22 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.35 Total: -19.73 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.93 -7.91 -42.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958227317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.144 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds