Wall clock time and date at job start Fri Apr 10 2020 17:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34491 * 126.47314 * 2 1 4 4 N 1.30860 * 109.16788 * 180.02562 * 3 2 1 5 5 C 1.33324 * 109.67947 * 359.76269 * 4 3 2 6 6 C 1.36660 * 107.78486 * 0.37681 * 5 4 3 7 7 C 1.46763 * 126.83982 * 179.89656 * 6 5 4 8 8 O 1.21689 * 119.99723 * 185.01844 * 7 6 5 9 9 N 1.34774 * 120.00427 * 5.01800 * 7 6 5 10 10 C 1.46503 * 120.00087 * 174.54533 * 9 7 6 11 11 C 1.53000 * 109.46966 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.78316 * 56.78283 * 11 10 9 13 13 C 1.54333 * 110.72174 * 293.54754 * 11 10 9 14 14 N 1.47012 * 107.27124 * 219.44719 * 13 11 10 15 15 C 1.36940 * 125.65091 * 178.90745 * 14 13 11 16 16 H 1.08004 * 119.99523 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00678 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00240 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47215 * 90.00031 * 19 17 15 21 21 H 1.48505 * 109.47263 * 210.00154 * 19 17 15 22 22 H 1.48498 * 109.47222 * 329.99841 * 19 17 15 23 23 C 1.47425 * 108.70749 * 358.93664 * 14 13 11 24 24 C 1.54905 * 104.82902 * 24.13185 * 23 14 13 25 25 H 1.09005 * 111.00491 * 204.91820 * 24 23 14 26 26 O 1.42902 * 111.00767 * 81.06415 * 24 23 14 27 27 H 1.08999 * 109.46706 * 271.86756 * 1 2 3 28 28 H 1.09000 * 109.47260 * 31.86951 * 1 2 3 29 29 H 1.08997 * 109.47199 * 151.87014 * 1 2 3 30 30 H 1.08003 * 125.41899 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.10363 * 180.28161 * 5 4 3 32 32 H 0.97000 * 119.99772 * 354.55477 * 9 7 6 33 33 H 1.09000 * 109.46939 * 60.00877 * 10 9 7 34 34 H 1.09000 * 109.47150 * 299.99913 * 10 9 7 35 35 H 1.09004 * 109.87517 * 338.86354 * 13 11 10 36 36 H 1.08994 * 109.88113 * 100.02312 * 13 11 10 37 37 H 0.96993 * 120.00146 * 179.97438 * 18 17 15 38 38 H 1.08996 * 110.36711 * 142.96644 * 23 14 13 39 39 H 1.08999 * 110.36546 * 265.18514 * 23 14 13 40 40 H 0.96699 * 113.99516 * 67.80171 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 -0.0006 5 6 3.5691 -0.6399 0.0043 6 6 2.2862 -1.1108 -0.0005 7 6 1.8650 -2.5167 0.0001 8 8 0.6851 -2.7984 -0.0968 9 7 2.7848 -3.4959 0.1079 10 6 2.3578 -4.8920 0.2288 11 6 3.5887 -5.7944 0.3360 12 1 4.2149 -5.4960 1.1768 13 6 4.3958 -5.7756 -0.9794 14 7 4.8635 -7.1477 -1.2241 15 6 5.5989 -7.5597 -2.3033 16 1 5.8826 -6.8497 -3.0661 17 6 5.9798 -8.8896 -2.4168 18 7 5.6345 -9.7548 -1.4869 19 14 6.9824 -9.4517 -3.8893 20 1 8.4293 -9.3219 -3.5817 21 1 6.6658 -10.8708 -4.1912 22 1 6.6490 -8.6092 -5.0659 23 6 4.4092 -8.0069 -0.1156 24 6 3.1690 -7.2825 0.4648 25 1 3.0104 -7.5547 1.5084 26 8 2.0040 -7.5556 -0.3164 27 1 -0.3633 0.0335 1.0271 28 1 -0.3634 0.8727 -0.5426 29 1 -0.3633 -0.9062 -0.4845 30 1 1.9288 2.1080 -0.0004 31 1 4.4673 -1.2395 0.0093 32 1 3.7296 -3.2761 0.1055 33 1 1.7773 -5.1718 -0.6503 34 1 1.7438 -5.0081 1.1219 35 1 3.7579 -5.4493 -1.8009 36 1 5.2492 -5.1049 -0.8810 37 1 5.9003 -10.6842 -1.5664 38 1 4.1324 -8.9929 -0.4888 39 1 5.1887 -8.0935 0.6413 40 1 1.7039 -8.4735 -0.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958227317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:21 Heat of formation + Delta-G solvation = -16.405139 kcal Electronic energy + Delta-G solvation = -23605.384033 eV Core-core repulsion = 20035.238959 eV Total energy + Delta-G solvation = -3570.145074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.19244 -40.64388 -39.63225 -36.34538 -36.21439 -34.94028 -33.97890 -31.98195 -30.62270 -29.28821 -27.98942 -27.24992 -25.49860 -23.78272 -22.39426 -22.11629 -21.34708 -20.78429 -19.16661 -18.93299 -18.02850 -17.22180 -17.03396 -16.80285 -16.73948 -16.14608 -15.73712 -15.56210 -15.27089 -14.99914 -14.67170 -14.41248 -14.37730 -13.91647 -13.81921 -13.64518 -13.58391 -13.16344 -13.02149 -12.64735 -12.31787 -12.02264 -11.85845 -11.82047 -11.69674 -11.38086 -10.93542 -10.79597 -10.73000 -10.64726 -10.21790 -9.63051 -8.84216 -7.77938 -5.19860 0.26879 1.46953 1.48017 1.49969 1.56682 1.82943 2.27938 2.30662 2.49766 3.29160 3.36561 3.54889 3.62576 3.80558 3.91216 3.95677 3.98479 4.02993 4.08927 4.37553 4.44216 4.45877 4.61502 4.65359 4.71285 4.85114 4.91576 5.02905 5.13484 5.29834 5.36952 5.41649 5.44643 5.52647 5.79031 6.10390 6.30294 6.41020 6.86467 6.97703 7.08879 7.12644 7.79469 8.41872 9.24128 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.003349 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.032593 B = 8359.252097 C = 9076.312331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.433 5.433 3 C 0.219 3.781 4 N -0.531 5.531 5 C 0.040 3.960 6 C -0.112 4.112 7 C 0.592 3.408 8 O -0.582 6.582 9 N -0.704 5.704 10 C 0.159 3.841 11 C -0.091 4.091 12 H 0.117 0.883 13 C 0.141 3.859 14 N -0.621 5.621 15 C -0.237 4.237 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.947 5.947 19 Si 0.977 3.023 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.274 1.274 23 C 0.126 3.874 24 C 0.094 3.906 25 H 0.091 0.909 26 O -0.570 6.570 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.256 0.744 31 H 0.194 0.806 32 H 0.414 0.586 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.013 0.987 36 H 0.034 0.966 37 H 0.247 0.753 38 H 0.079 0.921 39 H 0.002 0.998 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 18.428 7.393 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.113 5.113 3 C -0.063 4.063 4 N -0.249 5.249 5 C -0.115 4.115 6 C -0.228 4.228 7 C 0.380 3.620 8 O -0.463 6.463 9 N -0.355 5.355 10 C 0.036 3.964 11 C -0.111 4.111 12 H 0.135 0.865 13 C 0.016 3.984 14 N -0.347 5.347 15 C -0.366 4.366 16 H 0.094 0.906 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.806 3.194 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.199 1.199 23 C 0.001 3.999 24 C 0.033 3.967 25 H 0.109 0.891 26 O -0.377 6.377 27 H 0.109 0.891 28 H 0.142 0.858 29 H 0.099 0.901 30 H 0.272 0.728 31 H 0.211 0.789 32 H 0.251 0.749 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.020 0.980 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -9.641 19.189 7.103 22.619 hybrid contribution 0.408 -1.793 -0.746 1.984 sum -9.233 17.396 6.357 20.695 Atomic orbital electron populations 1.22466 0.73874 1.06294 1.05172 1.45501 1.09300 1.05425 1.51077 1.26030 0.84795 0.94915 1.00573 1.70195 1.20631 1.12231 1.21893 1.23019 0.95628 0.91637 1.01196 1.20688 0.92354 0.88670 1.21132 1.16998 0.85185 0.83938 0.75899 1.90760 1.18401 1.84598 1.52581 1.45619 1.10171 1.06241 1.73461 1.20957 0.95603 0.77955 1.01932 1.22473 0.95976 0.93827 0.98781 0.86532 1.21452 0.95232 0.86953 0.94791 1.44643 1.62159 1.04706 1.23167 1.19417 1.24700 0.93544 0.98928 0.90616 1.25540 1.02757 0.96145 1.01290 1.69985 1.51611 1.02680 1.35415 0.85091 0.78240 0.76995 0.79080 1.21248 1.21931 1.19926 1.22454 0.92329 0.96604 0.88537 1.23098 0.85437 0.94088 0.94044 0.89120 1.86378 1.44529 1.34118 1.72676 0.89136 0.85779 0.90084 0.72848 0.78876 0.74947 0.92797 0.90624 0.96919 0.94815 0.94335 0.90325 0.97989 0.76293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 10.79 127.77 1.38 2.22 16 2 N -0.43 -8.15 3.17 -539.82 -1.71 -9.86 16 3 C 0.22 3.47 12.52 180.33 2.26 5.73 16 4 N -0.53 -11.75 11.20 -199.56 -2.24 -13.98 16 5 C 0.04 0.88 11.37 84.10 0.96 1.83 16 6 C -0.11 -2.67 6.91 40.01 0.28 -2.39 16 7 C 0.59 16.60 7.78 86.47 0.67 17.27 16 8 O -0.58 -19.72 14.83 -4.31 -0.06 -19.78 16 9 N -0.70 -17.93 5.39 -466.99 -2.52 -20.44 16 10 C 0.16 4.66 4.59 86.38 0.40 5.06 16 11 C -0.09 -2.85 2.95 -9.60 -0.03 -2.88 16 12 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 13 C 0.14 5.63 6.52 86.73 0.57 6.20 16 14 N -0.62 -31.45 3.39 -692.01 -2.35 -33.80 16 15 C -0.24 -13.30 10.27 84.03 0.86 -12.44 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 17 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 18 N -0.95 -55.17 10.09 21.65 0.22 -54.95 16 19 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 C 0.13 5.88 5.62 86.85 0.49 6.36 16 24 C 0.09 3.25 4.17 31.99 0.13 3.38 16 25 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 26 O -0.57 -20.24 12.22 -148.98 -1.82 -22.06 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 1.58 6.30 -2.39 -0.02 1.57 16 30 H 0.26 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.19 3.34 7.46 -2.91 -0.02 3.31 16 32 H 0.41 8.63 7.27 -92.71 -0.67 7.96 16 33 H 0.05 1.94 7.44 -2.39 -0.02 1.92 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.01 0.55 7.77 -2.38 -0.02 0.53 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 38 H 0.08 4.20 5.88 -2.39 -0.01 4.18 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.39 11.27 9.12 -74.06 -0.68 10.60 16 Total: -1.00 -77.43 332.57 -0.29 -77.72 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.27 Total: 22.28 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 8.43 Total: 27.16 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -8.59 Total: -133.03 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.88 Total: -41.84 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.43 -0.29 -77.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958227317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.314 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds