Wall clock time and date at job start Fri Apr 10 2020 17:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.45033 * 2 1 4 4 C 1.53044 * 109.46393 * 119.96441 * 2 1 3 5 5 C 1.53184 * 109.31457 * 181.38486 * 4 2 1 6 6 N 1.46923 * 108.77823 * 305.36600 * 5 4 2 7 7 C 1.36936 * 120.63565 * 233.62894 * 6 5 4 8 8 H 1.08003 * 120.00454 * 152.59209 * 7 6 5 9 9 C 1.38813 * 119.99733 * 332.60618 * 7 6 5 10 10 N 1.31621 * 120.00341 * 159.35908 * 9 7 6 11 11 Si 1.86800 * 120.00016 * 339.35358 * 9 7 6 12 12 H 1.48494 * 109.46930 * 92.90242 * 11 9 7 13 13 H 1.48498 * 109.47387 * 212.90683 * 11 9 7 14 14 H 1.48504 * 109.46995 * 332.90384 * 11 9 7 15 15 C 1.46930 * 118.73613 * 53.60758 * 6 5 4 16 16 C 1.53041 * 109.46121 * 240.03350 * 2 1 3 17 17 H 1.08998 * 109.52650 * 298.58458 * 16 2 1 18 18 N 1.46505 * 109.49505 * 58.66159 * 16 2 1 19 19 C 1.34771 * 119.99779 * 204.84112 * 18 16 2 20 20 O 1.21286 * 120.00513 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99957 * 179.97438 * 19 18 16 22 22 N 1.46506 * 109.47170 * 179.97438 * 21 19 18 23 23 C 1.34595 * 126.43410 * 124.99834 * 22 21 19 24 24 N 1.31075 * 106.67525 * 180.02562 * 23 22 21 25 25 N 1.28833 * 107.99164 * 0.02562 * 24 23 22 26 26 N 1.28732 * 109.39847 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.46823 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46710 * 299.96506 * 1 2 3 29 29 H 1.08995 * 109.47278 * 59.96447 * 1 2 3 30 30 H 1.08997 * 109.49306 * 61.43107 * 4 2 1 31 31 H 1.09003 * 109.52149 * 301.35737 * 4 2 1 32 32 H 1.09002 * 109.58799 * 185.58065 * 5 4 2 33 33 H 1.09005 * 109.70534 * 65.22289 * 5 4 2 34 34 H 0.96994 * 120.00142 * 179.97438 * 10 9 7 35 35 H 1.09008 * 109.58619 * 186.60692 * 15 6 5 36 36 H 1.08997 * 109.58896 * 66.18669 * 15 6 5 37 37 H 0.96997 * 120.00160 * 24.83565 * 18 16 2 38 38 H 1.09003 * 109.46935 * 60.00456 * 21 19 18 39 39 H 1.08995 * 109.47314 * 300.00203 * 21 19 18 40 40 H 1.08002 * 126.66465 * 359.96941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9758 -2.2739 -0.0001 8 1 5.0117 -2.9635 -0.8305 9 6 5.8499 -2.4268 1.0673 10 7 6.4262 -3.5901 1.2846 11 14 6.2086 -0.9817 2.1953 12 1 5.2794 -1.0151 3.3531 13 1 7.6090 -1.0690 2.6817 14 1 6.0226 0.2878 1.4477 15 6 3.5713 -0.6885 -1.2643 16 6 2.0399 -0.7208 -1.2501 17 1 1.6978 -1.7556 -1.2389 18 7 1.5255 -0.0487 -2.4459 19 6 1.4001 -0.7314 -3.6012 20 8 1.7134 -1.9020 -3.6510 21 6 0.8705 -0.0402 -4.8312 22 7 0.8312 -0.9897 -5.9462 23 6 -0.2419 -1.2944 -6.6992 24 7 0.1553 -2.1817 -7.5785 25 7 1.4068 -2.4103 -7.3757 26 7 1.8183 -1.6924 -6.3895 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5133 0.8903 29 1 -0.3633 0.5144 -0.8896 30 1 1.6979 -1.7555 1.2383 31 1 1.6573 -0.2212 2.1401 32 1 3.9418 -1.2845 2.0984 33 1 3.9165 0.3402 1.3685 34 1 7.0373 -3.6968 2.0303 35 1 3.9416 -1.2845 -2.0985 36 1 3.9143 0.3410 -1.3675 37 1 1.2752 0.8876 -2.4063 38 1 1.5227 0.7945 -5.0881 39 1 -0.1351 0.3316 -4.6345 40 1 -1.2373 -0.8877 -6.5980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964963822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:52 Heat of formation + Delta-G solvation = 116.745110 kcal Electronic energy + Delta-G solvation = -24092.201938 eV Core-core repulsion = 20560.123444 eV Total energy + Delta-G solvation = -3532.078495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.29077 -40.20336 -38.18662 -35.60992 -34.83614 -33.34532 -32.56155 -31.47476 -30.35361 -28.74826 -27.63958 -24.24782 -23.96308 -23.67328 -22.64664 -21.41918 -20.68649 -19.84937 -18.05776 -17.94449 -16.89415 -16.59767 -16.23064 -15.75702 -15.55214 -15.17403 -14.33416 -14.18842 -13.94322 -13.71201 -13.39917 -13.34913 -12.87922 -12.67288 -12.30121 -12.26125 -12.20101 -11.79113 -11.41603 -11.33191 -11.25758 -11.07097 -10.98420 -10.77577 -10.53988 -10.21676 -10.11847 -9.95454 -9.76770 -9.49958 -9.21522 -8.60164 -7.03228 -5.95294 -3.33090 1.08740 1.62684 2.16825 2.28971 2.86239 3.27993 3.45159 3.47516 3.85751 3.98862 4.24255 4.35758 4.50347 4.60921 4.80838 4.92968 5.00793 5.09681 5.24713 5.38641 5.52245 5.59107 5.66196 5.69115 5.79003 5.85329 5.89590 5.98053 6.11248 6.23983 6.29927 6.35706 6.48759 6.57476 6.64629 6.82828 7.28077 7.91701 7.99048 8.32997 8.50091 8.92016 9.69627 10.03770 11.20561 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004043 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.014030 B = 6923.638316 C = 7870.429549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.127 4.127 5 C 0.121 3.879 6 N -0.600 5.600 7 C -0.262 4.262 8 H 0.087 0.913 9 C 0.025 3.975 10 N -0.906 5.906 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.303 1.303 14 H -0.271 1.271 15 C 0.143 3.857 16 C 0.133 3.867 17 H 0.092 0.908 18 N -0.713 5.713 19 C 0.496 3.504 20 O -0.500 6.500 21 C 0.095 3.905 22 N -0.300 5.300 23 C 0.155 3.845 24 N -0.309 5.309 25 N -0.079 5.079 26 N -0.056 5.056 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.397 0.603 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.813 15.179 -7.574 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.390 4.390 8 H 0.105 0.895 9 C -0.174 4.174 10 N -0.548 5.548 11 Si 0.713 3.287 12 H -0.216 1.216 13 H -0.231 1.231 14 H -0.197 1.197 15 C 0.016 3.984 16 C 0.028 3.972 17 H 0.110 0.890 18 N -0.365 5.365 19 C 0.277 3.723 20 O -0.373 6.373 21 C -0.031 4.031 22 N -0.102 5.102 23 C -0.143 4.143 24 N -0.156 5.156 25 N -0.073 5.073 26 N -0.042 5.042 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.231 0.769 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -16.477 13.321 -8.155 22.703 hybrid contribution -0.542 1.986 1.399 2.489 sum -17.019 15.307 -6.756 23.866 Atomic orbital electron populations 1.21845 0.95474 1.01880 1.00948 1.21310 0.95048 0.99646 0.95070 0.91164 1.22077 0.98373 1.00711 0.95477 1.21414 0.91647 0.97039 0.90333 1.44272 1.48671 1.40467 0.98942 1.18953 1.09753 1.02670 1.07629 0.89531 1.25266 0.97365 0.96642 0.98112 1.69843 1.32429 1.21973 1.30577 0.86954 0.76385 0.84790 0.80524 1.21619 1.23101 1.19655 1.21218 0.90038 0.96906 0.90245 1.21832 0.96653 0.97312 0.81438 0.88954 1.45944 1.66159 1.14337 1.10077 1.20069 0.80067 0.87856 0.84285 1.90920 1.47341 1.15506 1.83524 1.22030 1.06972 0.90617 0.83487 1.48175 1.07596 1.29956 1.24462 1.27698 0.96648 0.98475 0.91503 1.74975 1.05541 1.13581 1.21476 1.78703 1.03438 1.16459 1.08748 1.79096 1.13898 1.03587 1.07647 0.92671 0.92716 0.93249 0.91345 0.92101 0.90671 0.95605 0.92706 0.91266 0.95908 0.76858 0.84740 0.84147 0.74989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.02 37.16 0.34 -1.04 16 2 C -0.09 -1.15 2.27 -90.58 -0.21 -1.36 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -2.00 5.36 -26.61 -0.14 -2.14 16 5 C 0.12 2.49 4.21 -3.72 -0.02 2.47 16 6 N -0.60 -13.97 2.77 -172.32 -0.48 -14.45 16 7 C -0.26 -7.42 10.03 -15.06 -0.15 -7.57 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 9 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 10 N -0.91 -28.06 13.97 55.49 0.78 -27.29 16 11 Si 0.88 22.07 24.34 -169.99 -4.14 17.93 16 12 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 13 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 14 H -0.27 -6.60 6.64 56.52 0.38 -6.22 16 15 C 0.14 2.75 6.09 -3.71 -0.02 2.73 16 16 C 0.13 1.95 2.06 -67.81 -0.14 1.81 16 17 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 18 N -0.71 -7.00 4.37 -53.69 -0.23 -7.24 16 19 C 0.50 5.56 7.81 -10.99 -0.09 5.47 16 20 O -0.50 -8.87 15.36 5.55 0.09 -8.79 16 21 C 0.10 0.54 6.97 -5.19 -0.04 0.51 16 22 N -0.30 -3.06 3.19 -63.73 -0.20 -3.26 16 23 C 0.16 1.33 12.79 -90.39 -1.16 0.17 16 24 N -0.31 -4.12 12.36 29.59 0.37 -3.76 16 25 N -0.08 -1.29 13.43 60.35 0.81 -0.48 16 26 N -0.06 -0.85 12.28 60.35 0.74 -0.11 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.36 7.35 -51.93 -0.38 -0.03 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.73 4.50 -51.93 -0.23 1.50 16 33 H 0.03 0.52 7.07 -51.93 -0.37 0.15 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.07 1.50 7.93 -51.92 -0.41 1.09 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.40 2.21 8.30 -40.82 -0.34 1.87 16 38 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.14 0.04 8.08 -51.93 -0.42 -0.38 16 40 H 0.23 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -39.37 326.51 -4.61 -43.98 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.54 Total: -3.14 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.71 Total: 1.68 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 1.78 Total: -56.58 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -39.37 -4.61 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964963822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.721 kcal (2) G-P(sol) polarization free energy of solvation -39.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds