Wall clock time and date at job start Fri Apr 10 2020 17:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46016 * 2 1 4 4 C 1.53040 * 109.46110 * 240.04516 * 2 1 3 5 5 C 1.53195 * 109.31295 * 178.61406 * 4 2 1 6 6 N 1.46920 * 108.77506 * 54.63726 * 5 4 2 7 7 C 1.36938 * 120.63243 * 126.41225 * 6 5 4 8 8 H 1.07996 * 119.99905 * 331.82084 * 7 6 5 9 9 C 1.38812 * 119.99673 * 151.82672 * 7 6 5 10 10 N 1.31613 * 120.00454 * 343.06169 * 9 7 6 11 11 Si 1.86807 * 119.99638 * 163.06666 * 9 7 6 12 12 H 1.48499 * 109.46996 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47207 * 119.99399 * 11 9 7 14 14 H 1.48500 * 109.46838 * 239.99581 * 11 9 7 15 15 C 1.46932 * 118.73724 * 306.39112 * 6 5 4 16 16 C 1.53041 * 109.46241 * 119.97519 * 2 1 3 17 17 H 1.09000 * 109.49543 * 301.34208 * 16 2 1 18 18 N 1.46498 * 109.51905 * 61.41804 * 16 2 1 19 19 C 1.34787 * 119.99927 * 204.85841 * 18 16 2 20 20 O 1.21276 * 119.99646 * 359.97438 * 19 18 16 21 21 C 1.50694 * 119.99960 * 180.02562 * 19 18 16 22 22 N 1.46503 * 109.46896 * 179.97438 * 21 19 18 23 23 C 1.34594 * 126.43920 * 125.00492 * 22 21 19 24 24 N 1.31078 * 106.68137 * 179.97438 * 23 22 21 25 25 N 1.28841 * 107.98486 * 359.97438 * 24 23 22 26 26 N 1.28734 * 109.39939 * 359.73542 * 25 24 23 27 27 H 1.09004 * 109.46995 * 300.02476 * 1 2 3 28 28 H 1.09000 * 109.46755 * 60.01880 * 1 2 3 29 29 H 1.08994 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.49702 * 58.66138 * 4 2 1 31 31 H 1.09001 * 109.49840 * 298.56801 * 4 2 1 32 32 H 1.09000 * 109.58560 * 294.84240 * 5 4 2 33 33 H 1.08998 * 109.58148 * 174.42406 * 5 4 2 34 34 H 0.97003 * 120.00156 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.58842 * 173.39969 * 15 6 5 36 36 H 1.09005 * 109.58378 * 293.81713 * 15 6 5 37 37 H 0.96999 * 120.00565 * 24.85143 * 18 16 2 38 38 H 1.09001 * 109.47557 * 299.99519 * 21 19 18 39 39 H 1.08999 * 109.47264 * 59.99887 * 21 19 18 40 40 H 1.08001 * 126.66361 * 0.02652 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2502 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2488 -0.0003 7 6 4.9764 -2.2734 -0.0005 8 1 5.0044 -2.9701 -0.8251 9 6 5.8614 -2.4164 1.0594 10 7 6.0660 -1.4128 1.8860 11 14 6.7620 -4.0333 1.3124 12 1 6.3593 -4.9950 0.2549 13 1 8.2268 -3.8008 1.2387 14 1 6.4155 -4.5896 2.6449 15 6 3.5713 -0.6888 1.2641 16 6 2.0399 -0.7209 1.2500 17 1 1.6572 -0.2211 2.1398 18 7 1.5802 -2.1118 1.2346 19 6 1.4546 -2.7929 2.3909 20 8 1.7227 -2.2544 3.4440 21 6 0.9822 -4.2238 2.3751 22 7 0.9312 -4.7364 3.7466 23 6 -0.1352 -5.2884 4.3545 24 7 0.2470 -5.6091 5.5667 25 7 1.4838 -5.2720 5.6961 26 7 1.9020 -4.7498 4.5963 27 1 -0.3633 0.5142 0.8898 28 1 -0.3633 0.5136 -0.8902 29 1 -0.3633 -1.0276 0.0005 30 1 1.6572 -0.2203 -2.1399 31 1 1.6978 -1.7554 -1.2387 32 1 3.9143 0.3412 -1.3674 33 1 3.9416 -1.2841 -2.0987 34 1 6.6847 -1.5127 2.6264 35 1 3.9417 -1.2849 2.0982 36 1 3.9143 0.3407 1.3674 37 1 1.3660 -2.5426 0.3923 38 1 -0.0120 -4.2734 1.9311 39 1 1.6732 -4.8281 1.7872 40 1 -1.1153 -5.4389 3.9265 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964963825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:57 Heat of formation + Delta-G solvation = 83.750111 kcal Electronic energy + Delta-G solvation = -24859.003704 eV Core-core repulsion = 21325.494439 eV Total energy + Delta-G solvation = -3533.509265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.14886 -41.19036 -39.24188 -36.40541 -35.92375 -34.41300 -33.44670 -32.83663 -31.34230 -29.66735 -28.79494 -25.86072 -24.88394 -24.61947 -23.65033 -22.73457 -21.93241 -20.31812 -18.97054 -18.82447 -18.41788 -17.52319 -16.95292 -16.84987 -16.55356 -16.06924 -15.68999 -15.30013 -14.93439 -14.86375 -14.69499 -14.25786 -14.06459 -13.58948 -13.50623 -13.16546 -13.10868 -12.96849 -12.76680 -12.62621 -12.45876 -12.19355 -12.17528 -12.10720 -11.92352 -11.52918 -11.46073 -11.28758 -11.05049 -10.87695 -10.55700 -9.99920 -8.64961 -7.87244 -5.32041 0.31360 1.02059 1.26899 1.38873 1.42875 1.51546 1.55473 2.24183 2.47826 3.30363 3.34543 3.50296 3.66879 3.70014 3.90820 4.01912 4.02824 4.07090 4.15843 4.39670 4.54466 4.69862 4.73975 4.74860 4.83736 4.92017 5.00212 5.12657 5.21459 5.24200 5.29102 5.29673 5.50859 5.55023 5.61467 5.69857 5.72923 6.38545 6.58872 7.14320 7.29463 7.59947 7.88415 8.38728 9.17522 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.006927 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.754949 B = 4041.454739 C = 5779.284375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.113 4.113 5 C 0.133 3.867 6 N -0.598 5.598 7 C -0.243 4.243 8 H 0.077 0.923 9 C -0.050 4.050 10 N -0.935 5.935 11 Si 0.947 3.053 12 H -0.251 1.251 13 H -0.297 1.297 14 H -0.309 1.309 15 C 0.169 3.831 16 C 0.143 3.857 17 H 0.059 0.941 18 N -0.677 5.677 19 C 0.491 3.509 20 O -0.579 6.579 21 C 0.096 3.904 22 N -0.296 5.296 23 C 0.185 3.815 24 N -0.346 5.346 25 N -0.122 5.122 26 N -0.106 5.106 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.006 0.994 33 H 0.060 0.940 34 H 0.242 0.758 35 H 0.046 0.954 36 H -0.012 1.012 37 H 0.415 0.585 38 H 0.215 0.785 39 H 0.152 0.848 40 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.097 -4.185 -9.953 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.322 5.322 7 C -0.373 4.373 8 H 0.095 0.905 9 C -0.246 4.246 10 N -0.582 5.582 11 Si 0.777 3.223 12 H -0.174 1.174 13 H -0.225 1.225 14 H -0.237 1.237 15 C 0.042 3.958 16 C 0.036 3.964 17 H 0.077 0.923 18 N -0.329 5.329 19 C 0.276 3.724 20 O -0.458 6.458 21 C -0.027 4.027 22 N -0.098 5.098 23 C -0.112 4.112 24 N -0.194 5.194 25 N -0.117 5.117 26 N -0.094 5.094 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.006 0.994 37 H 0.254 0.746 38 H 0.232 0.768 39 H 0.169 0.831 40 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges -18.865 -3.894 -8.082 20.890 hybrid contribution 1.034 -0.261 -0.195 1.084 sum -17.831 -4.155 -8.276 20.093 Atomic orbital electron populations 1.21760 0.92508 1.02830 1.02022 1.21272 0.97242 0.98824 0.93333 0.91421 1.21951 0.95015 1.01004 0.97242 1.21190 0.94220 0.95619 0.88162 1.44198 1.48072 1.39380 1.00526 1.19482 1.08793 1.03293 1.05742 0.90490 1.25698 0.98876 0.99424 1.00593 1.70166 1.38506 1.30880 1.18652 0.85500 0.78005 0.81505 0.77284 1.17415 1.22492 1.23670 1.20871 0.90572 0.94671 0.89732 1.21376 0.94679 0.81750 0.98566 0.92291 1.45497 1.65674 1.13366 1.08363 1.20840 0.78355 0.88854 0.84372 1.90823 1.51502 1.70678 1.32845 1.22517 1.11530 0.92079 0.76618 1.48406 1.07909 1.39411 1.14083 1.28868 0.97725 0.95398 0.89206 1.74826 1.05452 1.21807 1.17320 1.78642 1.05180 1.12698 1.15137 1.79106 1.16771 1.16679 0.96812 0.93600 0.90800 0.91165 0.89187 0.90728 0.97647 0.92184 0.94920 0.93563 0.99363 0.74644 0.76804 0.83075 0.68202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.05 71.98 0.65 -1.55 16 2 C -0.09 -2.15 2.48 -10.77 -0.03 -2.17 16 3 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.11 -2.60 5.20 30.67 0.16 -2.44 16 5 C 0.13 4.61 6.52 86.36 0.56 5.17 16 6 N -0.60 -27.07 2.91 -699.11 -2.04 -29.11 16 7 C -0.24 -12.42 9.58 84.03 0.81 -11.61 16 8 H 0.08 3.71 7.88 -2.91 -0.02 3.69 16 9 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 10 N -0.94 -57.96 11.20 21.65 0.24 -57.72 16 11 Si 0.95 46.06 29.59 68.60 2.03 48.09 16 12 H -0.25 -10.88 7.11 99.48 0.71 -10.18 16 13 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 14 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 15 C 0.17 7.97 4.90 86.36 0.42 8.39 16 16 C 0.14 4.78 2.24 45.07 0.10 4.89 16 17 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 18 N -0.68 -17.92 4.26 -442.18 -1.88 -19.80 16 19 C 0.49 14.51 7.81 87.65 0.68 15.19 16 20 O -0.58 -24.98 15.38 -3.02 -0.05 -25.03 16 21 C 0.10 1.57 6.96 85.63 0.60 2.17 16 22 N -0.30 -7.44 3.19 -355.56 -1.13 -8.57 16 23 C 0.19 3.46 12.79 180.27 2.31 5.76 16 24 N -0.35 -10.50 12.36 -60.29 -0.75 -11.24 16 25 N -0.12 -4.76 13.43 37.01 0.50 -4.27 16 26 N -0.11 -4.11 12.31 37.02 0.46 -3.65 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.90 7.54 -2.39 -0.02 0.88 16 30 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.07 1.45 6.41 -2.39 -0.02 1.44 16 32 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 2.00 7.93 -2.39 -0.02 1.98 16 34 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.05 2.69 6.06 -2.39 -0.01 2.67 16 36 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 37 H 0.41 7.78 6.64 -92.71 -0.62 7.17 16 38 H 0.22 0.10 8.08 -2.39 -0.02 0.08 16 39 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.30 0.56 8.06 -2.91 -0.02 0.53 16 Total: -1.00 -92.33 329.86 4.51 -87.81 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 0.45 Total: 2.10 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.68 Total: 21.38 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -4.60 Total: -134.36 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -92.33 4.51 -87.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964963825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.564 kcal (2) G-P(sol) polarization free energy of solvation -92.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds