Wall clock time and date at job start Fri Apr 10 2020 17:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48504 * 109.47183 * 269.99595 * 3 2 1 5 5 H 1.48493 * 109.47244 * 29.99924 * 3 2 1 6 6 H 1.48498 * 109.46757 * 150.00165 * 3 2 1 7 7 C 1.38806 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00408 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.77940 * 31.75664 * 10 9 7 12 12 C 1.55161 * 110.71502 * 268.52040 * 10 9 7 13 13 C 1.55127 * 101.48502 * 205.96516 * 12 10 9 14 14 N 1.47433 * 104.72200 * 37.29653 * 13 12 10 15 15 C 1.34775 * 125.64719 * 155.81549 * 14 13 12 16 16 O 1.21281 * 119.99517 * 179.68980 * 15 14 13 17 17 C 1.50696 * 120.00084 * 359.69346 * 15 14 13 18 18 H 1.08992 * 115.55642 * 311.81565 * 17 15 14 19 19 C 1.53062 * 117.50296 * 166.05848 * 17 15 14 20 20 C 1.52709 * 59.93090 * 252.53165 * 19 17 15 21 21 C 1.53249 * 117.87853 * 107.79028 * 20 19 17 22 22 C 1.53336 * 108.48084 * 196.26806 * 21 20 19 23 23 O 1.42872 * 109.31496 * 306.00946 * 22 21 20 24 24 C 1.42871 * 114.51555 * 64.37038 * 23 22 21 25 25 C 1.53244 * 117.88366 * 252.21483 * 20 19 17 26 26 C 1.47023 * 108.70126 * 335.55296 * 14 13 12 27 27 H 0.96994 * 120.00339 * 0.02562 * 1 2 3 28 28 H 0.97009 * 120.00097 * 359.97438 * 9 7 2 29 29 H 1.08998 * 111.00242 * 324.20646 * 12 10 9 30 30 H 1.09002 * 111.00582 * 88.02184 * 12 10 9 31 31 H 1.09002 * 110.49776 * 278.45530 * 13 12 10 32 32 H 1.08997 * 110.34490 * 156.06106 * 13 12 10 33 33 H 1.09000 * 117.50312 * 145.06343 * 19 17 15 34 34 H 1.08996 * 117.50966 * 0.02562 * 19 17 15 35 35 H 1.09005 * 109.63592 * 315.96256 * 21 20 19 36 36 H 1.08994 * 109.63771 * 76.56525 * 21 20 19 37 37 H 1.08994 * 109.49801 * 186.05136 * 22 21 20 38 38 H 1.08999 * 109.49396 * 65.95552 * 22 21 20 39 39 H 1.08999 * 109.49793 * 175.67329 * 24 23 22 40 40 H 1.08998 * 109.49467 * 55.58063 * 24 23 22 41 41 H 1.09000 * 109.63699 * 283.43357 * 25 20 19 42 42 H 1.09001 * 109.63432 * 44.03672 * 25 20 19 43 43 H 1.08999 * 109.88249 * 120.70236 * 26 14 13 44 44 H 1.09005 * 109.88058 * 241.87118 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0019 -3.5584 0.5358 12 6 2.3001 -4.1508 -1.4514 13 6 2.4220 -5.6827 -1.2397 14 7 1.4367 -5.9953 -0.1885 15 6 0.8551 -7.1946 0.0114 16 8 0.0589 -7.3393 0.9147 17 6 1.1943 -8.3557 -0.8874 18 1 1.1662 -8.1464 -1.9567 19 6 0.7693 -9.7526 -0.4284 20 6 2.2418 -9.3498 -0.3905 21 6 2.8794 -9.0928 0.9791 22 6 4.1906 -8.3262 0.7687 23 8 5.0138 -9.0421 -0.1538 24 6 4.4731 -9.1483 -1.4720 25 6 3.1827 -9.9752 -1.4259 26 6 1.1983 -4.7837 0.6095 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0002 29 1 1.4532 -3.9079 -2.0931 30 1 3.2248 -3.7387 -1.8554 31 1 3.4269 -5.9434 -0.9073 32 1 2.1764 -6.2132 -2.1597 33 1 0.4612 -10.4626 -1.1959 34 1 0.2440 -9.8317 0.5234 35 1 2.2022 -8.4987 1.5928 36 1 3.0857 -10.0432 1.4713 37 1 4.7116 -8.2282 1.7210 38 1 3.9728 -7.3358 0.3690 39 1 5.1964 -9.6388 -2.1235 40 1 4.2534 -8.1523 -1.8564 41 1 3.4148 -11.0005 -1.1378 42 1 2.7065 -9.9660 -2.4063 43 1 0.1438 -4.5114 0.5640 44 1 1.4943 -4.9571 1.6441 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970892141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:29 Heat of formation + Delta-G solvation = -64.991680 kcal Electronic energy + Delta-G solvation = -24679.054577 eV Core-core repulsion = 21210.342976 eV Total energy + Delta-G solvation = -3468.711601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76081 -40.11546 -38.82603 -37.22083 -35.93681 -33.33013 -32.19806 -31.24130 -30.95389 -29.56351 -26.33335 -24.97555 -24.69424 -24.08854 -23.23443 -21.60237 -20.64013 -19.62225 -19.35810 -18.25055 -17.47707 -17.03241 -16.88618 -16.71340 -16.38529 -15.83807 -15.53400 -15.43490 -15.00501 -14.81778 -14.36914 -14.19613 -14.16526 -13.84647 -13.44268 -13.26248 -13.18106 -13.00349 -12.92672 -12.70154 -12.40259 -12.26384 -12.16478 -12.08747 -11.76502 -11.74751 -11.67456 -11.34866 -11.09830 -10.95760 -10.82291 -10.21813 -9.73107 -9.06654 -7.96046 -5.26797 1.43303 1.49048 1.50535 1.58928 1.86272 2.56314 2.67980 2.96035 3.30917 3.39517 3.62009 3.68393 3.72808 3.76342 3.82644 3.94760 4.05711 4.06716 4.17990 4.25087 4.35716 4.44322 4.48347 4.52691 4.64126 4.68128 4.75616 4.78554 4.83212 4.83514 4.92392 4.96171 5.00876 5.11684 5.18576 5.20628 5.23930 5.26857 5.41163 5.52336 6.24176 6.29272 6.49555 7.08203 7.30698 8.01906 8.25735 9.27525 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.003579 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.029551 B = 7820.535563 C = 8360.030955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.731 5.731 10 C 0.167 3.833 11 H 0.072 0.928 12 C -0.145 4.145 13 C 0.109 3.891 14 N -0.606 5.606 15 C 0.551 3.449 16 O -0.591 6.591 17 C -0.183 4.183 18 H 0.150 0.850 19 C -0.135 4.135 20 C -0.090 4.090 21 C -0.124 4.124 22 C 0.065 3.935 23 O -0.396 6.396 24 C 0.052 3.948 25 C -0.109 4.109 26 C 0.108 3.892 27 H 0.251 0.749 28 H 0.371 0.629 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.042 0.958 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 -22.764 -6.146 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.372 4.372 8 H 0.102 0.898 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.090 0.910 12 C -0.186 4.186 13 C -0.013 4.013 14 N -0.339 5.339 15 C 0.342 3.658 16 O -0.472 6.472 17 C -0.204 4.204 18 H 0.167 0.833 19 C -0.172 4.172 20 C -0.090 4.090 21 C -0.162 4.162 22 C -0.012 4.012 23 O -0.315 6.315 24 C -0.024 4.024 25 C -0.147 4.147 26 C -0.016 4.016 27 H 0.060 0.940 28 H 0.203 0.797 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.061 0.939 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.762 -22.840 -5.591 25.460 hybrid contribution -0.988 1.607 0.352 1.920 sum 8.773 -21.232 -5.238 23.563 Atomic orbital electron populations 1.69833 1.06848 1.26145 1.59388 1.25593 0.96276 1.01256 1.03528 0.85125 0.77738 0.79328 0.77464 1.21255 1.22689 1.19098 1.19654 0.91684 0.84688 1.41218 0.89788 1.42549 1.05334 1.00743 1.88371 1.21371 0.94131 0.83980 0.94817 0.90983 1.23418 1.02674 0.93939 0.98578 1.22568 0.92144 0.95666 0.90878 1.48462 1.43305 1.08923 1.33200 1.19966 0.79099 0.82667 0.84098 1.90672 1.37022 1.84056 1.35492 1.22395 1.08596 0.89158 1.00242 0.83264 1.23127 0.96025 0.94308 1.03761 1.21545 0.90886 0.99578 0.97009 1.21844 0.97309 1.01831 0.95182 1.22587 0.90705 0.93944 0.93937 1.87857 1.45899 1.76364 1.21420 1.22869 0.95700 1.00093 0.83732 1.21884 0.94683 0.99965 0.98137 1.22032 0.99478 0.85129 0.94960 0.94047 0.79659 0.92380 0.89130 0.89549 0.88254 0.84914 0.89687 0.92950 0.89648 0.88488 0.93269 0.86766 0.92392 0.89449 0.88063 0.93944 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 45.07 29.55 68.60 2.03 47.09 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.24 -12.86 9.96 84.03 0.84 -12.03 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.73 -35.92 5.22 -317.32 -1.66 -37.57 16 10 C 0.17 6.22 3.61 46.18 0.17 6.39 16 11 H 0.07 2.61 8.09 -2.39 -0.02 2.60 16 12 C -0.15 -4.33 6.78 32.06 0.22 -4.12 16 13 C 0.11 2.45 6.67 86.93 0.58 3.03 16 14 N -0.61 -17.82 3.33 -811.34 -2.70 -20.51 16 15 C 0.55 16.58 6.07 87.66 0.53 17.11 16 16 O -0.59 -23.12 16.37 -3.03 -0.05 -23.17 16 17 C -0.18 -3.67 5.00 -11.61 -0.06 -3.73 16 18 H 0.15 2.22 7.58 -2.39 -0.02 2.21 16 19 C -0.14 -2.40 9.51 30.52 0.29 -2.11 16 20 C -0.09 -1.49 2.03 -52.20 -0.11 -1.59 16 21 C -0.12 -2.49 5.58 30.79 0.17 -2.32 16 22 C 0.06 1.25 6.85 72.09 0.49 1.74 16 23 O -0.40 -7.43 10.69 -148.98 -1.59 -9.02 16 24 C 0.05 0.65 6.84 72.09 0.49 1.14 16 25 C -0.11 -1.19 5.92 30.79 0.18 -1.00 16 26 C 0.11 3.91 6.62 86.73 0.57 4.49 16 27 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.37 20.20 7.56 -92.70 -0.70 19.50 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.09 1.63 6.52 -2.39 -0.02 1.62 16 32 H 0.10 1.68 7.30 -2.39 -0.02 1.66 16 33 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.94 7.74 -2.39 -0.02 1.92 16 35 H 0.05 1.35 6.61 -2.38 -0.02 1.34 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 0.99 6.48 -2.39 -0.02 0.98 16 39 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 0.67 8.08 -2.39 -0.02 0.65 16 43 H 0.04 1.77 7.72 -2.39 -0.02 1.75 16 44 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -70.42 349.58 1.45 -68.97 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.29 Total: 29.86 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.84 Total: 3.30 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.07 Total: -117.03 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.64 Total: -32.19 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.42 1.45 -68.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970892141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.980 kcal (2) G-P(sol) polarization free energy of solvation -70.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds