Wall clock time and date at job start Fri Apr 10 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00534 * 2 1 4 4 H 1.48497 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46921 * 300.00675 * 3 2 1 6 6 H 1.48507 * 109.46790 * 60.00089 * 3 2 1 7 7 C 1.38824 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99450 * 196.74687 * 7 2 1 9 9 N 1.36934 * 119.99728 * 16.74563 * 7 2 1 10 10 C 1.47160 * 121.06154 * 205.74951 * 9 7 2 11 11 C 1.53280 * 108.55208 * 231.14688 * 10 9 7 12 12 O 1.43099 * 109.22459 * 307.10526 * 11 10 9 13 13 C 1.42064 * 114.33392 * 61.14511 * 12 11 10 14 14 C 1.54495 * 110.38607 * 177.16639 * 13 12 11 15 15 C 1.55028 * 101.53509 * 276.07501 * 14 13 12 16 16 N 1.47487 * 104.90074 * 323.63206 * 15 14 13 17 17 C 1.34776 * 125.66071 * 204.03435 * 16 15 14 18 18 O 1.21281 * 119.99392 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00334 * 359.97438 * 17 16 15 20 20 C 1.53001 * 109.47127 * 180.02562 * 19 17 16 21 21 C 1.53005 * 117.49511 * 243.74764 * 20 19 17 22 22 C 1.53000 * 117.49555 * 175.08871 * 20 19 17 23 23 C 1.47178 * 108.67315 * 24.01587 * 16 15 14 24 24 C 1.47302 * 121.06613 * 25.77140 * 9 7 2 25 25 H 0.96998 * 119.99702 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.62659 * 111.42649 * 10 9 7 27 27 H 1.09003 * 109.77624 * 350.95388 * 10 9 7 28 28 H 1.09004 * 109.51334 * 67.02276 * 11 10 9 29 29 H 1.08995 * 109.51640 * 187.18091 * 11 10 9 30 30 H 1.08999 * 111.00864 * 34.13408 * 14 13 12 31 31 H 1.09000 * 111.00927 * 158.00911 * 14 13 12 32 32 H 1.09004 * 110.34893 * 204.78039 * 15 14 13 33 33 H 1.08989 * 110.44573 * 82.53864 * 15 14 13 34 34 H 1.09000 * 109.46865 * 300.00141 * 19 17 16 35 35 H 1.09004 * 109.46985 * 60.00147 * 19 17 16 36 36 H 1.08995 * 115.54979 * 29.41635 * 20 19 17 37 37 H 1.08997 * 117.49915 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.49458 * 145.02547 * 21 20 19 39 39 H 1.09001 * 117.49735 * 214.97529 * 22 20 19 40 40 H 1.09001 * 117.50308 * 359.97438 * 22 20 19 41 41 H 1.08999 * 109.90997 * 239.11250 * 23 16 15 42 42 H 1.09001 * 109.90861 * 117.85045 * 23 16 15 43 43 H 1.09001 * 109.68049 * 250.32025 * 24 9 7 44 44 H 1.09000 * 109.68109 * 10.86676 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0559 -1.2221 0.2690 9 7 1.3690 -2.3628 -0.3427 10 6 1.8393 -3.6653 0.1552 11 6 1.9924 -4.6167 -1.0368 12 8 0.7709 -4.6388 -1.7820 13 6 0.3929 -3.3811 -2.3238 14 6 -0.8946 -3.5230 -3.1659 15 6 -0.3231 -3.9871 -4.5302 16 7 0.9503 -3.2573 -4.6760 17 6 1.5658 -2.9762 -5.8416 18 8 2.6144 -2.3669 -5.8420 19 6 0.9511 -3.4190 -7.1443 20 6 1.8439 -2.9773 -8.3057 21 6 1.2623 -1.9707 -9.3005 22 6 1.4503 -3.4331 -9.7122 23 6 1.4369 -2.8867 -3.3374 24 6 0.1869 -2.3474 -1.2214 25 1 -0.4849 0.8401 0.0004 26 1 1.1123 -4.0728 0.8577 27 1 2.8014 -3.5444 0.6529 28 1 2.8034 -4.2702 -1.6775 29 1 2.2164 -5.6203 -0.6753 30 1 -1.5572 -4.2778 -2.7426 31 1 -1.4063 -2.5653 -3.2618 32 1 -1.0063 -3.7223 -5.3372 33 1 -0.1451 -5.0623 -4.5225 34 1 0.8574 -4.5050 -7.1512 35 1 -0.0356 -2.9684 -7.2522 36 1 2.9076 -2.9042 -8.0795 37 1 0.2436 -1.6237 -9.1278 38 1 1.9436 -1.2358 -9.7291 39 1 2.2552 -3.6595 -10.4115 40 1 0.5557 -4.0480 -9.8101 41 1 1.5394 -1.8038 -3.2663 42 1 2.3968 -3.3662 -3.1454 43 1 -0.7029 -2.5989 -0.6441 44 1 0.0707 -1.3578 -1.6633 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972212794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:41 Heat of formation + Delta-G solvation = -43.073712 kcal Electronic energy + Delta-G solvation = -24938.218604 eV Core-core repulsion = 21470.457437 eV Total energy + Delta-G solvation = -3467.761166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63617 -40.23272 -38.08099 -37.38925 -36.29860 -33.38829 -33.11465 -30.79698 -30.36950 -29.08239 -27.27256 -25.07536 -24.57816 -23.21155 -22.65154 -21.91965 -20.49586 -20.10955 -18.90882 -18.30122 -17.80583 -17.02828 -16.95762 -16.38107 -16.15475 -15.85396 -15.41842 -15.35258 -15.20655 -14.83164 -14.80437 -14.51197 -13.93634 -13.62386 -13.38809 -13.17777 -13.03688 -12.90445 -12.76286 -12.52719 -12.42497 -12.32830 -12.24645 -12.16642 -12.14292 -11.79252 -11.30124 -11.18065 -11.01175 -10.83337 -10.76275 -10.53235 -9.70709 -8.76553 -7.95294 -5.39573 1.38880 1.42703 1.51431 1.60612 1.92920 2.42446 2.74943 2.92745 3.19021 3.35758 3.52106 3.67921 3.77147 3.79357 4.00849 4.05178 4.17533 4.21056 4.27775 4.37221 4.46899 4.51495 4.56585 4.64950 4.66663 4.73976 4.76922 4.81401 4.81939 4.91123 5.01585 5.04112 5.05835 5.16806 5.20305 5.24390 5.28889 5.36012 5.48474 5.57324 6.24939 6.33120 6.54224 7.03636 7.13056 7.71805 8.24712 9.10871 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.004739 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.301372 B = 5907.105388 C = 6894.721901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.043 4.043 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.616 5.616 10 C 0.105 3.895 11 C 0.050 3.950 12 O -0.370 6.370 13 C 0.092 3.908 14 C -0.114 4.114 15 C 0.106 3.894 16 N -0.618 5.618 17 C 0.516 3.484 18 O -0.596 6.596 19 C -0.089 4.089 20 C -0.166 4.166 21 C -0.186 4.186 22 C -0.154 4.154 23 C 0.108 3.892 24 C 0.173 3.827 25 H 0.252 0.748 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.012 0.988 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -11.807 -15.437 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.212 1.212 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.340 5.340 10 C -0.020 4.020 11 C -0.027 4.027 12 O -0.289 6.289 13 C 0.050 3.950 14 C -0.152 4.152 15 C -0.015 4.015 16 N -0.351 5.351 17 C 0.307 3.693 18 O -0.477 6.477 19 C -0.128 4.128 20 C -0.185 4.185 21 C -0.223 4.223 22 C -0.191 4.191 23 C -0.016 4.016 24 C 0.047 3.953 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.143 0.857 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.030 0.970 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.335 -11.511 -15.512 19.602 hybrid contribution 0.953 1.724 0.843 2.143 sum -2.382 -9.787 -14.669 17.795 Atomic orbital electron populations 1.70134 1.06278 1.25849 1.55330 1.25645 0.96086 1.00986 1.01205 0.85344 0.78662 0.80415 0.76934 1.19529 1.21945 1.21222 1.19495 0.92776 0.85782 1.41179 0.91593 1.44392 1.33059 1.02068 1.54499 1.21761 0.98678 0.86373 0.95229 1.23138 0.86024 1.01105 0.92479 1.87669 1.41785 1.29468 1.69987 1.22461 0.94617 0.85443 0.92486 1.22775 0.94846 1.03910 0.93658 1.22623 0.83552 0.97151 0.98161 1.48796 1.25178 1.56252 1.04922 1.21276 0.84068 0.78326 0.85615 1.90669 1.25751 1.43545 1.87753 1.21225 0.99815 1.04298 0.87485 1.21989 0.99401 1.06454 0.90645 1.23146 1.02491 0.93342 1.03306 1.23101 1.04086 0.96728 0.95160 1.22075 0.97943 0.98687 0.82876 1.21020 0.88170 0.96682 0.89458 0.93897 0.95613 0.91362 0.94247 0.85719 0.86839 0.89310 0.86676 0.89048 0.85768 0.86283 0.89688 0.87692 0.89410 0.88160 0.86419 0.94380 0.93104 0.97033 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.58 11.12 21.65 0.24 -54.34 16 2 C -0.04 -2.45 4.96 84.87 0.42 -2.03 16 3 Si 0.96 46.12 29.59 68.60 2.03 48.15 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.26 -14.68 9.66 84.04 0.81 -13.87 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 9 N -0.62 -31.24 2.97 -698.65 -2.08 -33.31 16 10 C 0.10 4.35 6.71 86.35 0.58 4.93 16 11 C 0.05 1.72 6.76 72.08 0.49 2.21 16 12 O -0.37 -13.21 10.26 -148.97 -1.53 -14.74 16 13 C 0.09 3.43 0.81 -10.22 -0.01 3.42 16 14 C -0.11 -3.10 6.21 31.80 0.20 -2.90 16 15 C 0.11 2.29 6.69 86.88 0.58 2.88 16 16 N -0.62 -19.38 3.33 -812.26 -2.71 -22.09 16 17 C 0.52 16.47 7.85 87.66 0.69 17.16 16 18 O -0.60 -25.33 15.89 -3.03 -0.05 -25.38 16 19 C -0.09 -1.75 4.99 29.85 0.15 -1.60 16 20 C -0.17 -3.55 5.41 -10.79 -0.06 -3.61 16 21 C -0.19 -3.34 10.18 30.62 0.31 -3.02 16 22 C -0.15 -2.19 10.25 30.62 0.31 -1.88 16 23 C 0.11 4.31 5.96 86.48 0.52 4.82 16 24 C 0.17 8.24 3.98 86.07 0.34 8.59 16 25 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 28 H 0.04 1.44 6.22 -2.38 -0.01 1.42 16 29 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.09 2.47 8.01 -2.39 -0.02 2.45 16 32 H 0.12 1.59 7.48 -2.38 -0.02 1.57 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.12 1.73 7.58 -2.38 -0.02 1.71 16 36 H 0.08 2.38 7.31 -2.39 -0.02 2.36 16 37 H 0.10 1.63 8.03 -2.39 -0.02 1.61 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.04 1.83 7.61 -2.39 -0.02 1.81 16 42 H 0.05 2.18 6.00 -2.39 -0.01 2.16 16 43 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 3.44 5.91 -2.39 -0.01 3.43 16 Total: -1.00 -73.78 346.51 2.22 -71.55 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.98 Total: 15.08 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.33 Total: 15.08 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.54 Total: -109.74 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.58 Total: -40.12 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.78 2.22 -71.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972212794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.479 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds