Wall clock time and date at job start Fri Apr 10 2020 17:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 115.55395 * 2 1 4 4 O 1.21288 * 119.99979 * 259.32002 * 3 2 1 5 5 N 1.34776 * 120.00170 * 79.30917 * 3 2 1 6 6 C 1.47484 * 125.66454 * 3.41046 * 5 3 2 7 7 C 1.55025 * 104.90147 * 204.02439 * 6 5 3 8 8 C 1.54518 * 101.52066 * 323.62286 * 7 6 5 9 9 C 1.47194 * 125.66132 * 183.10649 * 5 3 2 10 10 C 1.52506 * 110.05605 * 153.09979 * 8 7 6 11 11 N 1.47310 * 108.38413 * 72.02899 * 10 8 7 12 12 C 1.36933 * 121.06018 * 229.39683 * 11 10 8 13 13 H 1.07997 * 120.00139 * 150.98699 * 12 11 10 14 14 C 1.38815 * 120.00004 * 330.98417 * 12 11 10 15 15 N 1.31617 * 119.99550 * 348.27969 * 14 12 11 16 16 Si 1.86796 * 120.00357 * 168.28181 * 14 12 11 17 17 H 1.48498 * 109.47005 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47346 * 119.99769 * 16 14 12 19 19 H 1.48502 * 109.47216 * 240.00141 * 16 14 12 20 20 C 1.47158 * 117.88183 * 49.40883 * 11 10 8 21 21 C 1.53282 * 108.54303 * 308.89481 * 20 11 10 22 22 O 1.42067 * 110.33830 * 276.05613 * 8 7 6 23 23 C 1.53001 * 117.49571 * 145.66215 * 2 1 3 24 24 C 1.53001 * 60.03252 * 107.48325 * 23 2 1 25 25 H 1.09002 * 109.47193 * 269.88475 * 1 2 3 26 26 H 1.09006 * 109.46568 * 29.88433 * 1 2 3 27 27 H 1.08999 * 109.47033 * 149.88006 * 1 2 3 28 28 H 1.09001 * 110.35259 * 322.88616 * 6 5 3 29 29 H 1.09004 * 110.35078 * 85.16804 * 6 5 3 30 30 H 1.08997 * 111.01067 * 81.68512 * 7 6 5 31 31 H 1.08997 * 111.01324 * 205.52535 * 7 6 5 32 32 H 1.08997 * 109.90782 * 297.85900 * 9 5 3 33 33 H 1.08997 * 109.90794 * 59.12294 * 9 5 3 34 34 H 1.09005 * 109.68357 * 191.74843 * 10 8 7 35 35 H 1.08998 * 109.68496 * 312.26717 * 10 8 7 36 36 H 0.97008 * 120.00328 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.62659 * 68.60914 * 20 11 10 38 38 H 1.09003 * 109.62914 * 188.98614 * 20 11 10 39 39 H 1.09005 * 109.51200 * 172.80696 * 21 20 11 40 40 H 1.09005 * 109.51003 * 292.94917 * 21 20 11 41 41 H 1.08997 * 117.49970 * 214.98021 * 23 2 1 42 42 H 1.09006 * 117.50094 * 359.97438 * 23 2 1 43 43 H 1.08999 * 117.50119 * 107.50162 * 24 23 2 44 44 H 1.09005 * 117.49547 * 252.52495 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 8 2.6173 1.8227 -1.0322 5 7 2.2754 2.0609 1.1469 6 6 1.8525 1.5916 2.4796 7 6 1.5826 2.8849 3.2906 8 6 2.6893 3.8212 2.7557 9 6 2.8247 3.4202 1.2784 10 6 2.2496 5.2760 2.8819 11 7 2.2799 5.6486 4.3068 12 6 1.2109 6.2672 4.8981 13 1 1.0199 6.1256 5.9516 14 6 0.3727 7.0765 4.1435 15 7 0.7253 7.4367 2.9277 16 14 -1.2556 7.6543 4.8535 17 1 -1.4158 7.1145 6.2276 18 1 -1.2772 9.1385 4.8987 19 1 -2.3685 7.1688 3.9986 20 6 3.4956 5.3350 5.0744 21 6 3.8433 3.8584 4.8550 22 8 3.9074 3.5930 3.4502 23 6 2.2364 -1.1207 0.7656 24 6 2.2368 -1.1222 -0.7645 25 1 -0.3634 -0.0021 1.0277 26 1 -0.3633 0.8911 -0.5121 27 1 -0.3633 -0.8889 -0.5157 28 1 0.9427 0.9965 2.4008 29 1 2.6475 1.0101 2.9466 30 1 0.5926 3.2844 3.0710 31 1 1.7022 2.7080 4.3595 32 1 3.8742 3.4264 0.9844 33 1 2.2578 4.1115 0.6549 34 1 2.9311 5.9155 2.3208 35 1 1.2373 5.3886 2.4939 36 1 0.1395 8.0020 2.4001 37 1 4.3185 5.9603 4.7283 38 1 3.3171 5.5185 6.1340 39 1 4.8089 3.6401 5.3113 40 1 3.0754 3.2322 5.3092 41 1 3.1714 -0.8747 1.2688 42 1 1.6111 -1.8577 1.2696 43 1 3.1720 -0.8772 -1.2678 44 1 1.6114 -1.8600 -1.2671 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972398872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:46 Heat of formation + Delta-G solvation = -39.475987 kcal Electronic energy + Delta-G solvation = -25294.903859 eV Core-core repulsion = 21827.298702 eV Total energy + Delta-G solvation = -3467.605157 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.75845 -40.47781 -37.88129 -37.41759 -36.26582 -33.26792 -32.82814 -30.89695 -29.72266 -29.09412 -27.64509 -25.43510 -24.62844 -23.49458 -23.18251 -22.50006 -20.50919 -19.71040 -18.96959 -17.96733 -17.58016 -17.01284 -16.81112 -16.37697 -16.14344 -15.80249 -15.46170 -15.24919 -15.15502 -14.57469 -14.49367 -14.22158 -13.84455 -13.72132 -13.61076 -13.37298 -13.19886 -13.08156 -12.84328 -12.68745 -12.49053 -12.40182 -12.31172 -12.10333 -11.86821 -11.81791 -11.54325 -11.17658 -11.01635 -10.79810 -10.71524 -10.49798 -9.78150 -8.69958 -7.89890 -5.41056 1.45753 1.47906 1.48387 1.57976 1.80652 2.47015 2.71499 2.75302 3.23350 3.32061 3.51301 3.57952 3.70581 3.89742 3.93866 3.96287 4.07789 4.22924 4.30495 4.37705 4.48803 4.51428 4.60648 4.68248 4.73493 4.76200 4.78850 4.83995 4.88711 4.92430 4.98744 5.03644 5.08709 5.14691 5.15396 5.22207 5.25379 5.27159 5.50808 5.61314 6.30312 6.36957 6.46803 7.03183 7.06576 7.74252 8.30331 9.16260 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.004705 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.809007 B = 5949.543807 C = 6568.368303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.171 4.171 3 C 0.554 3.446 4 O -0.592 6.592 5 N -0.607 5.607 6 C 0.114 3.886 7 C -0.137 4.137 8 C 0.096 3.904 9 C 0.128 3.872 10 C 0.177 3.823 11 N -0.608 5.608 12 C -0.257 4.257 13 H 0.077 0.923 14 C -0.049 4.049 15 N -0.940 5.940 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.296 1.296 19 H -0.291 1.291 20 C 0.102 3.898 21 C 0.052 3.948 22 O -0.383 6.383 23 C -0.139 4.139 24 C -0.147 4.147 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.061 0.939 34 H -0.012 1.012 35 H 0.067 0.933 36 H 0.249 0.751 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -19.375 1.263 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.174 4.174 3 C 0.345 3.655 4 O -0.473 6.473 5 N -0.339 5.339 6 C -0.008 4.008 7 C -0.175 4.175 8 C 0.054 3.946 9 C 0.004 3.996 10 C 0.050 3.950 11 N -0.332 5.332 12 C -0.387 4.387 13 H 0.095 0.905 14 C -0.244 4.244 15 N -0.587 5.587 16 Si 0.796 3.204 17 H -0.184 1.184 18 H -0.223 1.223 19 H -0.218 1.218 20 C -0.024 4.024 21 C -0.025 4.025 22 O -0.303 6.303 23 C -0.176 4.176 24 C -0.184 4.184 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.006 0.994 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.154 0.846 43 H 0.098 0.902 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.746 -19.127 0.508 19.148 hybrid contribution -0.690 1.693 -0.072 1.829 sum 0.056 -17.434 0.435 17.440 Atomic orbital electron populations 1.21284 0.88229 1.02972 1.03520 1.21381 0.97189 0.86884 1.11946 1.20105 0.77854 0.86515 0.81071 1.90660 1.51059 1.72188 1.33350 1.48621 1.60974 1.15625 1.08698 1.22519 1.01424 0.96338 0.80473 1.23089 0.98396 0.94656 1.01387 1.22293 0.85679 0.96202 0.90402 1.21546 0.98951 0.84079 0.94979 1.20870 0.99381 0.89191 0.85509 1.44286 1.13506 1.68843 1.06602 1.19571 1.03089 1.21054 0.94992 0.90546 1.25896 1.03337 0.97698 0.97447 1.70162 1.37607 1.39012 1.11881 0.85186 0.79572 0.77155 0.78439 1.18387 1.22335 1.21790 1.21821 0.88453 0.95262 0.96825 1.23206 1.03022 0.95351 0.80895 1.87685 1.32785 1.88168 1.21627 1.23248 1.01930 0.98054 0.94332 1.23198 1.01856 0.97955 0.95384 0.90053 0.93941 0.88938 0.87806 0.89513 0.91237 0.88232 0.91758 0.92030 0.99386 0.91487 0.94144 0.97083 0.90519 0.86255 0.91696 0.88968 0.84583 0.90165 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.67 71.98 0.70 -1.10 16 2 C -0.17 -3.73 1.56 -52.90 -0.08 -3.81 16 3 C 0.55 18.07 6.96 87.66 0.61 18.68 16 4 O -0.59 -24.68 17.32 -3.05 -0.05 -24.74 16 5 N -0.61 -19.36 3.33 -812.24 -2.71 -22.07 16 6 C 0.11 2.83 6.25 86.88 0.54 3.37 16 7 C -0.14 -4.32 5.91 31.80 0.19 -4.13 16 8 C 0.10 3.65 0.83 -10.21 -0.01 3.65 16 9 C 0.13 4.88 6.25 86.47 0.54 5.42 16 10 C 0.18 8.59 3.90 86.06 0.34 8.92 16 11 N -0.61 -29.50 2.93 -698.66 -2.05 -31.55 16 12 C -0.26 -13.46 9.65 84.03 0.81 -12.64 16 13 H 0.08 3.81 7.86 -2.91 -0.02 3.78 16 14 C -0.05 -2.63 5.05 84.86 0.43 -2.20 16 15 N -0.94 -55.28 11.06 21.65 0.24 -55.04 16 16 Si 0.97 43.47 29.57 68.60 2.03 45.50 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 C 0.10 4.01 6.72 86.35 0.58 4.59 16 21 C 0.05 1.63 6.76 72.08 0.49 2.12 16 22 O -0.38 -13.94 10.21 -148.97 -1.52 -15.47 16 23 C -0.14 -2.10 9.40 30.60 0.29 -1.81 16 24 C -0.15 -2.65 9.80 30.62 0.30 -2.35 16 25 H 0.08 1.16 7.28 -2.39 -0.02 1.14 16 26 H 0.04 0.93 8.04 -2.38 -0.02 0.91 16 27 H 0.09 1.15 7.88 -2.39 -0.02 1.13 16 28 H 0.10 2.00 6.60 -2.39 -0.02 1.99 16 29 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.07 2.44 7.86 -2.39 -0.02 2.42 16 31 H 0.10 2.92 5.98 -2.39 -0.01 2.90 16 32 H 0.06 2.54 8.06 -2.39 -0.02 2.52 16 33 H 0.06 2.59 7.79 -2.39 -0.02 2.57 16 34 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 35 H 0.07 3.64 6.06 -2.39 -0.01 3.62 16 36 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.08 2.78 7.96 -2.39 -0.02 2.76 16 39 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 40 H 0.06 1.85 6.13 -2.38 -0.01 1.84 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.14 1.22 8.14 -2.38 -0.02 1.21 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.13 1.62 8.03 -2.38 -0.02 1.60 16 Total: -1.00 -70.94 345.30 2.64 -68.30 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.98 Total: 16.37 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 5.72 Total: 18.69 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -4.52 Total: -108.66 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.57 Total: -40.20 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -70.94 2.64 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972398872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.828 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds