Wall clock time and date at job start Fri Apr 10 2020 17:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99969 * 2 1 4 4 H 1.48497 * 109.47468 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47730 * 300.00640 * 3 2 1 6 6 H 1.48509 * 109.46925 * 60.00442 * 3 2 1 7 7 C 1.38815 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.47475 * 125.62692 * 180.02562 * 9 7 2 11 11 C 1.54915 * 104.80964 * 204.05084 * 10 9 7 12 12 H 1.09000 * 111.00035 * 81.13557 * 11 10 9 13 13 N 1.46493 * 111.00163 * 204.95275 * 11 10 9 14 14 C 1.34784 * 119.99864 * 270.41618 * 13 11 10 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 11 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 11 17 17 H 1.08998 * 115.55751 * 34.28149 * 16 14 13 18 18 C 1.53089 * 117.50931 * 248.50032 * 16 14 13 19 19 C 1.52560 * 117.50899 * 179.97438 * 16 14 13 20 20 C 1.53873 * 120.82223 * 357.25610 * 19 16 14 21 21 C 1.54990 * 104.05802 * 192.35853 * 20 19 16 22 22 C 1.54912 * 102.82479 * 37.56633 * 21 20 19 23 23 C 1.53477 * 121.08882 * 217.88102 * 19 16 14 24 24 C 1.55163 * 101.61466 * 323.04646 * 11 10 9 25 25 H 1.08996 * 110.71577 * 154.02500 * 24 11 10 26 26 O 1.42904 * 110.71435 * 277.11621 * 24 11 10 27 27 C 1.47025 * 125.64885 * 359.97438 * 9 7 2 28 28 H 0.97000 * 120.00482 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.34716 * 85.23763 * 10 9 7 30 30 H 1.08998 * 110.40139 * 322.89496 * 10 9 7 31 31 H 0.97000 * 120.00740 * 90.14311 * 13 11 10 32 32 H 1.08998 * 117.50810 * 359.97438 * 18 16 14 33 33 H 1.09006 * 117.51057 * 145.08855 * 18 16 14 34 34 H 1.08996 * 110.51366 * 311.00091 * 20 19 16 35 35 H 1.08998 * 110.51027 * 73.71407 * 20 19 16 36 36 H 1.09007 * 110.73885 * 279.22996 * 21 20 19 37 37 H 1.09004 * 110.73835 * 155.90243 * 21 20 19 38 38 H 1.08997 * 110.48416 * 203.59802 * 22 21 20 39 39 H 1.09000 * 110.59554 * 81.02061 * 22 21 20 40 40 H 1.09002 * 110.07188 * 263.30763 * 23 19 16 41 41 H 1.08996 * 110.06972 * 24.79106 * 23 19 16 42 42 H 0.96709 * 113.99450 * 180.02562 * 26 24 11 43 43 H 1.08994 * 109.88384 * 59.57844 * 27 9 7 44 44 H 1.09000 * 110.00891 * 298.48019 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9342 -3.7314 -0.0005 11 6 0.8519 -4.6565 -0.6109 12 1 0.8563 -4.5976 -1.6993 13 7 1.0292 -6.0395 -0.1617 14 6 1.8116 -6.8816 -0.8657 15 8 2.3647 -6.4956 -1.8736 16 6 1.9989 -8.3026 -0.4003 17 1 1.1328 -8.7583 0.0795 18 6 3.3845 -8.7012 0.1144 19 6 2.8958 -9.2067 -1.2402 20 6 3.5283 -8.6959 -2.5466 21 6 4.0713 -9.9776 -3.2283 22 6 2.9843 -11.0303 -2.8966 23 6 2.5506 -10.6866 -1.4553 24 6 -0.4484 -4.0441 -0.0262 25 1 -1.2990 -4.2545 -0.6743 26 8 -0.6882 -4.5339 1.2947 27 6 -0.1375 -2.5328 0.0005 28 1 -0.4851 0.8400 0.0004 29 1 2.1679 -4.0416 1.0179 30 1 2.8332 -3.7412 -0.6169 31 1 0.5868 -6.3482 0.6444 32 1 4.1604 -7.9357 0.1159 33 1 3.4301 -9.4194 0.9332 34 1 2.7757 -8.2190 -3.1744 35 1 4.3423 -8.0035 -2.3317 36 1 5.0313 -10.2656 -2.7997 37 1 4.1553 -9.8357 -4.3058 38 1 3.4018 -12.0362 -2.9396 39 1 2.1407 -10.9390 -3.5807 40 1 3.0964 -11.3054 -0.7429 41 1 1.4779 -10.8411 -1.3396 42 1 -1.4898 -4.1817 1.7053 43 1 -0.5581 -2.0524 -0.8828 44 1 -0.5560 -2.0839 0.9013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083920686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:26 Heat of formation + Delta-G solvation = -41.283723 kcal Electronic energy + Delta-G solvation = -24194.052277 eV Core-core repulsion = 20726.368730 eV Total energy + Delta-G solvation = -3467.683547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.29074 -38.69200 -37.43664 -34.83471 -34.19537 -33.86713 -31.61777 -28.78733 -28.57148 -27.24425 -25.72462 -24.66441 -23.55818 -20.81839 -20.66446 -20.31591 -19.81014 -18.82057 -17.43844 -16.75931 -16.67441 -15.58755 -15.51218 -14.96457 -14.73289 -14.54141 -14.10557 -13.91659 -13.53648 -13.11789 -13.09805 -12.76590 -12.58117 -12.43260 -12.23883 -12.14336 -11.29401 -11.25601 -11.12564 -10.96513 -10.94555 -10.84463 -10.66181 -10.51363 -10.44637 -10.29920 -10.08272 -9.90712 -9.81438 -9.39671 -9.22966 -8.68287 -8.58580 -6.86755 -5.74601 -3.07396 2.71029 3.31906 3.39980 3.45859 3.48334 3.76331 4.32360 4.48293 4.51571 4.58158 4.73418 4.77703 5.01931 5.04637 5.17350 5.31023 5.38652 5.40674 5.53505 5.54189 5.59393 5.65925 5.67498 5.73412 5.78687 5.88087 5.88535 5.91467 6.02432 6.09500 6.11442 6.24104 6.31432 6.46413 6.65962 6.69374 6.97617 7.33822 7.45226 7.73384 7.89873 8.07982 8.20161 8.55756 9.18400 9.78507 10.43162 11.37764 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.003316 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.757598 B = 8442.000263 C = 9036.365616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.132 3.868 11 C 0.140 3.860 12 H 0.102 0.898 13 N -0.705 5.705 14 C 0.538 3.462 15 O -0.539 6.539 16 C -0.180 4.180 17 H 0.120 0.880 18 C -0.141 4.141 19 C -0.095 4.095 20 C -0.076 4.076 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.089 4.089 24 C 0.068 3.932 25 H 0.060 0.940 26 O -0.568 6.568 27 C 0.155 3.845 28 H 0.252 0.748 29 H 0.025 0.975 30 H 0.043 0.957 31 H 0.406 0.594 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.379 0.621 43 H 0.055 0.945 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -21.186 -0.810 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.005 3.995 11 C 0.034 3.966 12 H 0.120 0.880 13 N -0.356 5.356 14 C 0.324 3.676 15 O -0.416 6.416 16 C -0.201 4.201 17 H 0.137 0.863 18 C -0.179 4.179 19 C -0.095 4.095 20 C -0.114 4.114 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.126 4.126 24 C 0.008 3.992 25 H 0.078 0.922 26 O -0.374 6.374 27 C 0.029 3.971 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.241 0.759 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.227 0.773 43 H 0.073 0.927 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.913 -20.983 -1.661 21.135 hybrid contribution -0.511 1.214 0.700 1.491 sum 1.402 -19.769 -0.962 19.842 Atomic orbital electron populations 1.69923 1.04907 1.24986 1.57666 1.24795 0.95789 0.97717 1.02302 0.85994 0.78773 0.83524 0.77203 1.20449 1.21720 1.21763 1.19147 0.90588 0.82187 1.43199 0.90228 1.44301 1.01258 0.99937 1.87286 1.21836 0.94603 0.85737 0.97345 1.22317 0.95259 0.79751 0.99283 0.87973 1.45742 1.49469 1.11257 1.29121 1.19649 0.78593 0.85902 0.83469 1.90688 1.47902 1.77701 1.25329 1.22283 0.96724 0.94183 1.06905 0.86254 1.23040 0.94821 1.02957 0.97047 1.21767 1.00493 0.94102 0.93176 1.21865 1.00140 0.95827 0.93524 1.22568 0.98097 0.95637 1.00281 1.22332 0.98831 0.98699 0.96111 1.21671 1.00962 0.92721 0.97243 1.23510 0.95624 0.96914 0.83171 0.92203 1.86254 1.49168 1.71644 1.30304 1.21845 0.85555 0.87753 1.01928 0.93793 0.95714 0.93835 0.75856 0.88121 0.87980 0.89868 0.91372 0.91756 0.91655 0.91834 0.91618 0.91396 0.91548 0.77335 0.92695 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.99 10.31 55.49 0.57 -26.42 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.69 3.40 -170.03 -0.58 -16.26 16 10 C 0.13 2.96 6.92 -2.50 -0.02 2.94 16 11 C 0.14 2.64 3.25 -65.78 -0.21 2.43 16 12 H 0.10 2.06 7.63 -51.93 -0.40 1.67 16 13 N -0.71 -11.06 5.18 -51.73 -0.27 -11.33 16 14 C 0.54 8.39 7.61 -10.98 -0.08 8.31 16 15 O -0.54 -10.13 13.39 5.56 0.07 -10.06 16 16 C -0.18 -2.11 6.06 -91.95 -0.56 -2.66 16 17 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 18 C -0.14 -1.48 9.94 -26.88 -0.27 -1.75 16 19 C -0.09 -1.04 2.45 -154.22 -0.38 -1.41 16 20 C -0.08 -0.94 4.77 -25.23 -0.12 -1.06 16 21 C -0.13 -1.23 6.91 -24.67 -0.17 -1.40 16 22 C -0.12 -1.03 6.84 -24.99 -0.17 -1.20 16 23 C -0.09 -0.77 6.55 -25.75 -0.17 -0.94 16 24 C 0.07 1.23 4.20 -24.89 -0.10 1.13 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 O -0.57 -9.12 12.14 -35.23 -0.43 -9.54 16 27 C 0.15 3.66 5.14 -3.06 -0.02 3.65 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.41 5.68 7.57 -40.82 -0.31 5.37 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.20 6.97 -51.93 -0.36 0.84 16 35 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 36 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.38 4.71 9.12 45.56 0.42 5.12 16 43 H 0.06 1.43 7.38 -51.93 -0.38 1.05 16 44 H 0.05 1.36 7.43 -51.93 -0.39 0.97 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -32.22 349.63 -9.35 -41.58 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.46 Total: 8.29 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.52 Total: 1.13 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.27 Total: -54.01 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.35 Total: -19.60 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.22 -9.35 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083920686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.294 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds