Wall clock time and date at job start Fri Apr 10 2020 17:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99969 * 2 1 4 4 H 1.48497 * 109.47468 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47730 * 300.00640 * 3 2 1 6 6 H 1.48509 * 109.46925 * 60.00442 * 3 2 1 7 7 C 1.38815 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99911 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.47475 * 125.62692 * 180.02562 * 9 7 2 11 11 C 1.54915 * 104.80964 * 204.05084 * 10 9 7 12 12 H 1.09000 * 111.00035 * 81.13557 * 11 10 9 13 13 N 1.46493 * 111.00163 * 204.95275 * 11 10 9 14 14 C 1.34784 * 119.99864 * 270.41618 * 13 11 10 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 11 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 11 17 17 H 1.08998 * 115.55751 * 34.28149 * 16 14 13 18 18 C 1.53089 * 117.50931 * 248.50032 * 16 14 13 19 19 C 1.52560 * 117.50899 * 179.97438 * 16 14 13 20 20 C 1.53873 * 120.82223 * 357.25610 * 19 16 14 21 21 C 1.54990 * 104.05802 * 192.35853 * 20 19 16 22 22 C 1.54912 * 102.82479 * 37.56633 * 21 20 19 23 23 C 1.53477 * 121.08882 * 217.88102 * 19 16 14 24 24 C 1.55163 * 101.61466 * 323.04646 * 11 10 9 25 25 H 1.08996 * 110.71577 * 154.02500 * 24 11 10 26 26 O 1.42904 * 110.71435 * 277.11621 * 24 11 10 27 27 C 1.47025 * 125.64885 * 359.97438 * 9 7 2 28 28 H 0.97000 * 120.00482 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.34716 * 85.23763 * 10 9 7 30 30 H 1.08998 * 110.40139 * 322.89496 * 10 9 7 31 31 H 0.97000 * 120.00740 * 90.14311 * 13 11 10 32 32 H 1.08998 * 117.50810 * 359.97438 * 18 16 14 33 33 H 1.09006 * 117.51057 * 145.08855 * 18 16 14 34 34 H 1.08996 * 110.51366 * 311.00091 * 20 19 16 35 35 H 1.08998 * 110.51027 * 73.71407 * 20 19 16 36 36 H 1.09007 * 110.73885 * 279.22996 * 21 20 19 37 37 H 1.09004 * 110.73835 * 155.90243 * 21 20 19 38 38 H 1.08997 * 110.48416 * 203.59802 * 22 21 20 39 39 H 1.09000 * 110.59554 * 81.02061 * 22 21 20 40 40 H 1.09002 * 110.07188 * 263.30763 * 23 19 16 41 41 H 1.08996 * 110.06972 * 24.79106 * 23 19 16 42 42 H 0.96709 * 113.99450 * 180.02562 * 26 24 11 43 43 H 1.08994 * 109.88384 * 59.57844 * 27 9 7 44 44 H 1.09000 * 110.00891 * 298.48019 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9342 -3.7314 -0.0005 11 6 0.8519 -4.6565 -0.6109 12 1 0.8563 -4.5976 -1.6993 13 7 1.0292 -6.0395 -0.1617 14 6 1.8116 -6.8816 -0.8657 15 8 2.3647 -6.4956 -1.8736 16 6 1.9989 -8.3026 -0.4003 17 1 1.1328 -8.7583 0.0795 18 6 3.3845 -8.7012 0.1144 19 6 2.8958 -9.2067 -1.2402 20 6 3.5283 -8.6959 -2.5466 21 6 4.0713 -9.9776 -3.2283 22 6 2.9843 -11.0303 -2.8966 23 6 2.5506 -10.6866 -1.4553 24 6 -0.4484 -4.0441 -0.0262 25 1 -1.2990 -4.2545 -0.6743 26 8 -0.6882 -4.5339 1.2947 27 6 -0.1375 -2.5328 0.0005 28 1 -0.4851 0.8400 0.0004 29 1 2.1679 -4.0416 1.0179 30 1 2.8332 -3.7412 -0.6169 31 1 0.5868 -6.3482 0.6444 32 1 4.1604 -7.9357 0.1159 33 1 3.4301 -9.4194 0.9332 34 1 2.7757 -8.2190 -3.1744 35 1 4.3423 -8.0035 -2.3317 36 1 5.0313 -10.2656 -2.7997 37 1 4.1553 -9.8357 -4.3058 38 1 3.4018 -12.0362 -2.9396 39 1 2.1407 -10.9390 -3.5807 40 1 3.0964 -11.3054 -0.7429 41 1 1.4779 -10.8411 -1.3396 42 1 -1.4898 -4.1817 1.7053 43 1 -0.5581 -2.0524 -0.8828 44 1 -0.5560 -2.0839 0.9013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083920686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:25 Heat of formation + Delta-G solvation = -64.150948 kcal Electronic energy + Delta-G solvation = -24195.043874 eV Core-core repulsion = 20726.368730 eV Total energy + Delta-G solvation = -3468.675144 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43598 -40.05208 -38.70873 -36.48088 -35.39034 -35.05407 -33.56209 -30.37777 -29.56436 -28.96235 -26.91089 -26.20318 -24.79280 -22.41252 -21.78334 -21.55804 -21.22425 -19.78001 -19.17200 -18.36703 -17.87458 -16.97620 -16.72602 -16.36561 -15.96233 -15.83869 -15.72974 -15.24463 -14.77792 -14.63517 -14.47281 -14.24526 -13.99930 -13.75683 -13.34992 -13.21668 -13.07770 -12.82902 -12.78255 -12.31282 -12.10164 -12.01110 -11.93609 -11.91415 -11.89891 -11.72319 -11.37912 -11.22927 -10.91771 -10.87207 -10.79935 -10.43129 -10.03557 -8.97691 -7.91262 -5.27379 1.43552 1.44667 1.52781 1.55387 2.06975 2.46848 2.83267 3.15636 3.27733 3.46787 3.61834 3.69461 3.79469 3.85575 3.94684 3.98327 4.07805 4.23932 4.31835 4.36353 4.48098 4.64022 4.64459 4.77372 4.78863 4.80410 4.91179 4.94883 5.02312 5.08012 5.11051 5.14482 5.25753 5.33427 5.38134 5.43088 5.47021 5.50131 5.56186 5.62298 6.11828 6.65017 6.86249 7.04080 7.32325 7.67823 8.31705 9.18814 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027053 B = 0.003316 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.757598 B = 8442.000263 C = 9036.365616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.622 5.622 10 C 0.134 3.866 11 C 0.153 3.847 12 H 0.087 0.913 13 N -0.695 5.695 14 C 0.532 3.468 15 O -0.577 6.577 16 C -0.184 4.184 17 H 0.151 0.849 18 C -0.131 4.131 19 C -0.098 4.098 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.083 4.083 24 C 0.093 3.907 25 H 0.091 0.909 26 O -0.564 6.564 27 C 0.160 3.840 28 H 0.250 0.750 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.418 0.582 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.398 0.602 43 H 0.024 0.976 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -23.691 0.188 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.349 5.349 10 C 0.007 3.993 11 C 0.046 3.954 12 H 0.105 0.895 13 N -0.346 5.346 14 C 0.320 3.680 15 O -0.457 6.457 16 C -0.205 4.205 17 H 0.168 0.832 18 C -0.169 4.169 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.120 4.120 24 C 0.033 3.967 25 H 0.109 0.891 26 O -0.372 6.372 27 C 0.035 3.965 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.256 0.744 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.249 0.751 43 H 0.042 0.958 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.616 -23.528 -0.632 23.592 hybrid contribution -0.378 2.024 0.381 2.094 sum 1.237 -21.504 -0.251 21.541 Atomic orbital electron populations 1.70118 1.06042 1.25491 1.57963 1.25625 0.96795 1.00833 1.02123 0.84979 0.77976 0.79178 0.76984 1.19496 1.21557 1.21388 1.19450 0.90884 0.83694 1.43647 0.90651 1.44583 1.02541 1.00584 1.87176 1.21862 0.95096 0.85303 0.97022 1.21879 0.94236 0.81087 0.98233 0.89467 1.45606 1.49740 1.09705 1.29593 1.20433 0.77404 0.87416 0.82720 1.90686 1.49187 1.78737 1.27085 1.22328 0.98576 0.91515 1.08039 0.83158 1.23135 0.93137 1.02785 0.97795 1.21904 1.00022 0.95451 0.92482 1.21786 0.98745 0.96633 0.94657 1.22552 0.98991 0.94613 1.00079 1.22349 0.98204 0.99134 0.96077 1.21701 1.01945 0.90754 0.97643 1.23116 0.96116 0.92628 0.84854 0.89145 1.86215 1.50698 1.71089 1.29218 1.21712 0.84082 0.91531 0.99224 0.94076 0.95869 0.95697 0.74425 0.90054 0.84669 0.92756 0.93942 0.90855 0.91685 0.89782 0.91896 0.89420 0.90496 0.75076 0.95776 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.45 10.31 21.65 0.22 -56.23 16 2 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 3 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.25 -14.53 10.28 84.03 0.86 -13.67 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.62 -33.47 3.40 -691.86 -2.35 -35.82 16 10 C 0.13 6.17 6.92 86.85 0.60 6.77 16 11 C 0.15 5.78 3.25 46.39 0.15 5.93 16 12 H 0.09 3.61 7.63 -2.39 -0.02 3.59 16 13 N -0.69 -21.04 5.18 -435.95 -2.26 -23.30 16 14 C 0.53 16.36 7.61 87.65 0.67 17.03 16 15 O -0.58 -22.44 13.39 -3.04 -0.04 -22.48 16 16 C -0.18 -3.91 6.06 -11.66 -0.07 -3.98 16 17 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.13 -2.46 9.94 30.50 0.30 -2.15 16 19 C -0.10 -1.97 2.45 -52.00 -0.13 -2.09 16 20 C -0.08 -2.02 4.77 31.57 0.15 -1.87 16 21 C -0.12 -2.26 6.91 31.93 0.22 -2.04 16 22 C -0.12 -1.70 6.84 31.72 0.22 -1.49 16 23 C -0.08 -1.15 6.55 31.23 0.20 -0.95 16 24 C 0.09 3.30 4.20 31.78 0.13 3.44 16 25 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 26 O -0.56 -16.86 12.14 -148.98 -1.81 -18.67 16 27 C 0.16 7.75 5.14 86.73 0.45 8.20 16 28 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.42 10.70 7.57 -92.71 -0.70 10.00 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 1.65 6.97 -2.39 -0.02 1.64 16 35 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16 36 H 0.07 1.19 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.40 8.88 9.12 -74.05 -0.68 8.20 16 43 H 0.02 1.30 7.38 -2.39 -0.02 1.28 16 44 H 0.03 1.45 7.43 -2.39 -0.02 1.43 16 Total: -1.00 -72.79 349.63 -0.35 -73.14 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.37 Total: 24.64 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 4.23 Total: 10.09 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -4.38 Total: -115.35 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -1.85 Total: -41.15 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -72.79 -0.35 -73.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083920686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.987 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds