Wall clock time and date at job start Fri Apr 10 2020 17:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99747 * 2 1 4 4 H 1.48499 * 109.47147 * 84.48599 * 3 2 1 5 5 H 1.48499 * 109.47093 * 324.48587 * 3 2 1 6 6 H 1.48502 * 109.46731 * 204.48213 * 3 2 1 7 7 C 1.38809 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99173 * 325.50459 * 7 2 1 9 9 N 1.36927 * 120.00172 * 145.50414 * 7 2 1 10 10 C 1.46617 * 119.89242 * 331.36065 * 9 7 2 11 11 C 1.53100 * 108.00966 * 237.30144 * 10 9 7 12 12 C 1.53005 * 109.45094 * 301.02404 * 11 10 9 13 13 H 1.09002 * 113.42478 * 275.04394 * 12 11 10 14 14 C 1.54653 * 110.84266 * 143.88816 * 12 11 10 15 15 N 1.47803 * 85.79179 * 270.23491 * 14 12 11 16 16 C 1.34774 * 135.00970 * 153.79060 * 15 14 12 17 17 O 1.21287 * 119.99885 * 175.02257 * 16 15 14 18 18 C 1.50703 * 120.00461 * 355.01425 * 16 15 14 19 19 C 1.53177 * 109.54445 * 213.32917 * 18 16 15 20 20 C 1.53092 * 109.15958 * 183.15096 * 19 18 16 21 21 O 1.42907 * 109.41434 * 57.60900 * 20 19 18 22 22 C 1.42899 * 114.09934 * 298.83819 * 21 20 19 23 23 C 1.53088 * 109.41326 * 61.15775 * 22 21 20 24 24 C 1.46818 * 89.97626 * 333.80468 * 15 14 12 25 25 H 1.09004 * 111.56087 * 274.48696 * 24 15 14 26 26 C 1.45679 * 119.89029 * 151.08806 * 9 7 2 27 27 H 0.97003 * 120.00298 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.75202 * 356.93123 * 10 9 7 29 29 H 1.08997 * 109.75242 * 117.67618 * 10 9 7 30 30 H 1.09002 * 109.47445 * 61.01881 * 11 10 9 31 31 H 1.09004 * 109.47842 * 181.02627 * 11 10 9 32 32 H 1.09000 * 113.81437 * 24.45061 * 14 12 11 33 33 H 1.09002 * 113.82407 * 156.00949 * 14 12 11 34 34 H 1.09006 * 109.53856 * 333.59795 * 18 16 15 35 35 H 1.09004 * 109.52105 * 303.05280 * 19 18 16 36 36 H 1.08999 * 109.52541 * 63.24836 * 19 18 16 37 37 H 1.09000 * 109.48634 * 297.62651 * 20 19 18 38 38 H 1.08996 * 109.48071 * 177.59220 * 20 19 18 39 39 H 1.09002 * 109.47691 * 301.17867 * 22 21 20 40 40 H 1.08993 * 109.49361 * 181.14674 * 22 21 20 41 41 H 1.09001 * 109.52594 * 182.48874 * 23 22 21 42 42 H 1.09000 * 109.52369 * 62.29720 * 23 22 21 43 43 H 1.09004 * 108.71175 * 261.77040 * 26 9 7 44 44 H 1.08998 * 108.71637 * 19.78572 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3811 2.1138 1.3936 5 1 1.5107 2.6163 -0.8133 6 1 3.6011 1.4094 -0.5802 7 6 2.0103 -1.2021 -0.0005 8 1 1.6126 -2.0554 0.5288 9 7 3.1990 -1.3060 -0.6722 10 6 3.4496 -0.4671 -1.8482 11 6 3.7581 -1.3895 -3.0306 12 6 4.9786 -2.2509 -2.6998 13 1 5.9273 -1.7592 -2.9153 14 6 4.8278 -3.6704 -3.2946 15 7 4.1784 -4.0200 -2.0137 16 6 3.2744 -4.9402 -1.6233 17 8 2.9869 -5.0481 -0.4499 18 6 2.6204 -5.8348 -2.6446 19 6 1.1848 -6.1450 -2.2098 20 6 0.5552 -7.1165 -3.2115 21 8 1.3497 -8.3019 -3.2872 22 6 2.6887 -8.0794 -3.7341 23 6 3.4040 -7.1465 -2.7534 24 6 4.9262 -2.9492 -1.3431 25 1 5.9131 -3.2872 -1.0268 26 6 4.2129 -2.2455 -0.2123 27 1 -0.4851 0.8400 0.0004 28 1 2.5658 0.1315 -2.0687 29 1 4.3007 0.1871 -1.6594 30 1 2.9000 -2.0336 -3.2226 31 1 3.9666 -0.7884 -3.9157 32 1 4.1596 -3.7186 -4.1545 33 1 5.7762 -4.1811 -3.4613 34 1 2.6096 -5.3352 -3.6133 35 1 1.1943 -6.5990 -1.2189 36 1 0.6048 -5.2225 -2.1834 37 1 0.5090 -6.6466 -4.1940 38 1 -0.4520 -7.3742 -2.8841 39 1 2.6704 -7.6220 -4.7233 40 1 3.2185 -9.0306 -3.7831 41 1 4.4111 -6.9402 -3.1156 42 1 3.4583 -7.6206 -1.7734 43 1 4.9462 -1.7039 0.3853 44 1 3.7351 -2.9942 0.4196 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084148894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:45 Heat of formation + Delta-G solvation = -17.737839 kcal Electronic energy + Delta-G solvation = -25441.364140 eV Core-core repulsion = 21974.701619 eV Total energy + Delta-G solvation = -3466.662521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.75850 -39.42463 -37.60504 -35.47784 -33.60785 -31.92123 -31.21921 -31.10557 -29.27151 -27.24437 -25.67009 -23.74597 -23.61484 -23.30394 -21.26791 -20.88186 -19.58510 -17.86044 -17.12604 -16.50719 -16.18557 -16.10511 -15.67480 -15.23635 -14.97948 -14.74450 -14.17958 -13.90864 -13.78134 -13.57580 -13.21032 -12.88320 -12.76532 -12.50764 -12.38488 -12.19317 -11.80993 -11.52498 -11.49330 -11.34308 -11.08600 -10.89104 -10.72580 -10.65467 -10.49466 -10.25334 -10.00406 -9.86049 -9.68963 -9.34874 -8.99786 -8.47616 -8.24954 -6.90396 -5.97115 -3.19060 3.01023 3.06022 3.41275 3.53458 3.57796 3.77775 4.46083 4.52919 4.61061 4.67996 4.68954 4.89190 4.96720 5.04536 5.09334 5.21989 5.22344 5.33909 5.37766 5.43798 5.46375 5.50971 5.55785 5.56188 5.69896 5.78098 5.83862 5.88158 5.98414 6.05104 6.09958 6.24020 6.34064 6.36916 6.41129 6.65237 6.76621 6.83463 7.00821 7.08149 8.05151 8.10168 8.42255 8.58343 9.06096 9.80624 10.17454 11.18044 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.005095 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.720549 B = 5494.397894 C = 6211.224905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.036 3.964 3 Si 0.837 3.163 4 H -0.294 1.294 5 H -0.296 1.296 6 H -0.255 1.255 7 C -0.264 4.264 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.121 4.121 12 C -0.108 4.108 13 H 0.089 0.911 14 C 0.097 3.903 15 N -0.631 5.631 16 C 0.546 3.454 17 O -0.528 6.528 18 C -0.099 4.099 19 C -0.141 4.141 20 C 0.063 3.937 21 O -0.384 6.384 22 C 0.065 3.935 23 C -0.142 4.142 24 C 0.130 3.870 25 H 0.077 0.923 26 C 0.141 3.859 27 H 0.261 0.739 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.023 0.977 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.030 -11.390 -12.203 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.164 4.164 3 Si 0.664 3.336 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.391 4.391 8 H 0.097 0.903 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.160 4.160 12 C -0.127 4.127 13 H 0.107 0.893 14 C -0.026 4.026 15 N -0.367 5.367 16 C 0.335 3.665 17 O -0.404 6.404 18 C -0.121 4.121 19 C -0.179 4.179 20 C -0.013 4.013 21 O -0.303 6.303 22 C -0.012 4.012 23 C -0.180 4.180 24 C 0.026 3.974 25 H 0.094 0.906 26 C 0.015 3.985 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.041 0.959 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.469 -11.728 -11.420 18.911 hybrid contribution 0.632 1.403 -0.013 1.539 sum 10.102 -10.324 -11.433 18.421 Atomic orbital electron populations 1.70088 1.06169 1.26597 1.49937 1.25229 0.94824 0.97314 0.99028 0.87582 0.82170 0.85983 0.77819 1.22220 1.22283 1.17947 1.18807 0.94240 0.96202 1.29883 0.90305 1.43782 1.15875 1.43421 1.28413 1.21240 0.98990 0.91980 0.85891 1.21928 0.96021 0.98796 0.99243 1.22882 1.00040 0.94487 0.95325 0.89310 1.23531 0.96626 0.94226 0.88226 1.49834 1.41391 1.33203 1.12262 1.19949 0.78538 0.78769 0.89212 1.90702 1.62501 1.68554 1.18650 1.21225 0.96528 0.95467 0.98861 1.22080 0.93935 1.00931 1.00954 1.22626 0.94839 0.85784 0.98074 1.87926 1.22787 1.31659 1.87896 1.22530 0.83255 0.99657 0.95745 1.22115 0.99029 0.94918 1.01941 1.22378 0.94040 0.85363 0.95606 0.90552 1.20283 0.91838 0.93176 0.93223 0.92941 0.91371 0.95272 0.91559 0.92408 0.90418 0.90275 0.89753 0.89615 0.89872 0.93158 0.88393 0.93149 0.88744 0.90810 0.90264 0.95932 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.97 55.49 0.78 -26.65 16 2 C 0.04 1.06 4.84 -17.43 -0.08 0.98 16 3 Si 0.84 21.36 26.40 -169.99 -4.49 16.88 16 4 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.25 -6.06 4.86 56.52 0.27 -5.78 16 7 C -0.26 -7.61 9.79 -15.06 -0.15 -7.76 16 8 H 0.08 2.55 8.02 -52.48 -0.42 2.13 16 9 N -0.59 -14.29 2.71 -174.89 -0.47 -14.76 16 10 C 0.14 3.07 4.30 -3.93 -0.02 3.05 16 11 C -0.12 -1.99 5.66 -26.68 -0.15 -2.14 16 12 C -0.11 -1.48 4.39 -89.97 -0.40 -1.87 16 13 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.10 1.11 7.81 -3.01 -0.02 1.09 16 15 N -0.63 -10.05 3.35 -173.82 -0.58 -10.64 16 16 C 0.55 9.73 6.99 -10.99 -0.08 9.65 16 17 O -0.53 -11.81 15.44 5.55 0.09 -11.73 16 18 C -0.10 -1.36 2.47 -91.59 -0.23 -1.59 16 19 C -0.14 -2.04 5.12 -26.59 -0.14 -2.17 16 20 C 0.06 0.74 6.84 37.20 0.25 1.00 16 21 O -0.38 -4.77 10.77 -35.23 -0.38 -5.15 16 22 C 0.07 0.64 6.84 37.20 0.25 0.89 16 23 C -0.14 -1.59 5.40 -26.59 -0.14 -1.73 16 24 C 0.13 2.13 4.22 -69.44 -0.29 1.83 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 C 0.14 2.98 6.21 -5.45 -0.03 2.95 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.07 1.59 5.48 -51.93 -0.28 1.31 16 29 H 0.03 0.60 6.76 -51.93 -0.35 0.25 16 30 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.80 7.67 -51.93 -0.40 0.41 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.03 7.59 -51.93 -0.39 0.64 16 35 H 0.09 1.40 7.76 -51.93 -0.40 1.00 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.87 6.43 -51.93 -0.33 1.53 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -34.49 336.00 -8.54 -43.02 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.32 Total: -0.20 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.22 Total: 4.17 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.28 Total: -52.05 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.29 Total: -16.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.49 Total: 16.88 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.49 -8.54 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084148894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.286 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds