Wall clock time and date at job start Fri Apr 10 2020 17:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99747 * 2 1 4 4 H 1.48499 * 109.47147 * 84.48599 * 3 2 1 5 5 H 1.48499 * 109.47093 * 324.48587 * 3 2 1 6 6 H 1.48502 * 109.46731 * 204.48213 * 3 2 1 7 7 C 1.38809 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99173 * 325.50459 * 7 2 1 9 9 N 1.36927 * 120.00172 * 145.50414 * 7 2 1 10 10 C 1.46617 * 119.89242 * 331.36065 * 9 7 2 11 11 C 1.53100 * 108.00966 * 237.30144 * 10 9 7 12 12 C 1.53005 * 109.45094 * 301.02404 * 11 10 9 13 13 H 1.09002 * 113.42478 * 275.04394 * 12 11 10 14 14 C 1.54653 * 110.84266 * 143.88816 * 12 11 10 15 15 N 1.47803 * 85.79179 * 270.23491 * 14 12 11 16 16 C 1.34774 * 135.00970 * 153.79060 * 15 14 12 17 17 O 1.21287 * 119.99885 * 175.02257 * 16 15 14 18 18 C 1.50703 * 120.00461 * 355.01425 * 16 15 14 19 19 C 1.53177 * 109.54445 * 213.32917 * 18 16 15 20 20 C 1.53092 * 109.15958 * 183.15096 * 19 18 16 21 21 O 1.42907 * 109.41434 * 57.60900 * 20 19 18 22 22 C 1.42899 * 114.09934 * 298.83819 * 21 20 19 23 23 C 1.53088 * 109.41326 * 61.15775 * 22 21 20 24 24 C 1.46818 * 89.97626 * 333.80468 * 15 14 12 25 25 H 1.09004 * 111.56087 * 274.48696 * 24 15 14 26 26 C 1.45679 * 119.89029 * 151.08806 * 9 7 2 27 27 H 0.97003 * 120.00298 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.75202 * 356.93123 * 10 9 7 29 29 H 1.08997 * 109.75242 * 117.67618 * 10 9 7 30 30 H 1.09002 * 109.47445 * 61.01881 * 11 10 9 31 31 H 1.09004 * 109.47842 * 181.02627 * 11 10 9 32 32 H 1.09000 * 113.81437 * 24.45061 * 14 12 11 33 33 H 1.09002 * 113.82407 * 156.00949 * 14 12 11 34 34 H 1.09006 * 109.53856 * 333.59795 * 18 16 15 35 35 H 1.09004 * 109.52105 * 303.05280 * 19 18 16 36 36 H 1.08999 * 109.52541 * 63.24836 * 19 18 16 37 37 H 1.09000 * 109.48634 * 297.62651 * 20 19 18 38 38 H 1.08996 * 109.48071 * 177.59220 * 20 19 18 39 39 H 1.09002 * 109.47691 * 301.17867 * 22 21 20 40 40 H 1.08993 * 109.49361 * 181.14674 * 22 21 20 41 41 H 1.09001 * 109.52594 * 182.48874 * 23 22 21 42 42 H 1.09000 * 109.52369 * 62.29720 * 23 22 21 43 43 H 1.09004 * 108.71175 * 261.77040 * 26 9 7 44 44 H 1.08998 * 108.71637 * 19.78572 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3811 2.1138 1.3936 5 1 1.5107 2.6163 -0.8133 6 1 3.6011 1.4094 -0.5802 7 6 2.0103 -1.2021 -0.0005 8 1 1.6126 -2.0554 0.5288 9 7 3.1990 -1.3060 -0.6722 10 6 3.4496 -0.4671 -1.8482 11 6 3.7581 -1.3895 -3.0306 12 6 4.9786 -2.2509 -2.6998 13 1 5.9273 -1.7592 -2.9153 14 6 4.8278 -3.6704 -3.2946 15 7 4.1784 -4.0200 -2.0137 16 6 3.2744 -4.9402 -1.6233 17 8 2.9869 -5.0481 -0.4499 18 6 2.6204 -5.8348 -2.6446 19 6 1.1848 -6.1450 -2.2098 20 6 0.5552 -7.1165 -3.2115 21 8 1.3497 -8.3019 -3.2872 22 6 2.6887 -8.0794 -3.7341 23 6 3.4040 -7.1465 -2.7534 24 6 4.9262 -2.9492 -1.3431 25 1 5.9131 -3.2872 -1.0268 26 6 4.2129 -2.2455 -0.2123 27 1 -0.4851 0.8400 0.0004 28 1 2.5658 0.1315 -2.0687 29 1 4.3007 0.1871 -1.6594 30 1 2.9000 -2.0336 -3.2226 31 1 3.9666 -0.7884 -3.9157 32 1 4.1596 -3.7186 -4.1545 33 1 5.7762 -4.1811 -3.4613 34 1 2.6096 -5.3352 -3.6133 35 1 1.1943 -6.5990 -1.2189 36 1 0.6048 -5.2225 -2.1834 37 1 0.5090 -6.6466 -4.1940 38 1 -0.4520 -7.3742 -2.8841 39 1 2.6704 -7.6220 -4.7233 40 1 3.2185 -9.0306 -3.7831 41 1 4.4111 -6.9402 -3.1156 42 1 3.4583 -7.6206 -1.7734 43 1 4.9462 -1.7039 0.3853 44 1 3.7351 -2.9942 0.4196 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084148894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:44 Heat of formation + Delta-G solvation = -43.371416 kcal Electronic energy + Delta-G solvation = -25442.475695 eV Core-core repulsion = 21974.701619 eV Total energy + Delta-G solvation = -3467.774076 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.99713 -40.48889 -38.92270 -37.22478 -34.73603 -33.94440 -32.70556 -32.13227 -30.71938 -28.79784 -26.75029 -25.48948 -24.75026 -24.53822 -22.78920 -22.04979 -20.77816 -19.36422 -18.71481 -17.92188 -17.37538 -17.15573 -17.04227 -16.84626 -16.35832 -15.73864 -15.61223 -15.37486 -15.26164 -14.94562 -14.54696 -14.36202 -14.17952 -14.05358 -13.88946 -13.32491 -13.31348 -12.94615 -12.70364 -12.65759 -12.57099 -12.36405 -12.18944 -12.11880 -11.74207 -11.58376 -11.49435 -11.28313 -11.25791 -10.79456 -10.61095 -10.27714 -9.57948 -8.90184 -8.24684 -5.44223 1.33472 1.43578 1.52177 1.69494 1.89888 2.42576 2.92115 2.92811 3.33935 3.41857 3.46952 3.62762 3.72549 3.89705 3.96609 4.08740 4.18393 4.23487 4.31363 4.36660 4.44819 4.49002 4.58722 4.59043 4.61660 4.66200 4.72615 4.75394 4.80445 4.86715 4.99080 5.00554 5.02596 5.05371 5.09554 5.17526 5.24024 5.29175 5.58829 5.87963 6.09085 6.22135 6.86694 6.96630 7.26523 7.67714 8.02302 8.95143 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020230 B = 0.005095 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.720549 B = 5494.397894 C = 6211.224905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.020 4.020 3 Si 0.919 3.081 4 H -0.304 1.304 5 H -0.292 1.292 6 H -0.220 1.220 7 C -0.262 4.262 8 H 0.014 0.986 9 N -0.603 5.603 10 C 0.135 3.865 11 C -0.114 4.114 12 C -0.098 4.098 13 H 0.136 0.864 14 C 0.111 3.889 15 N -0.640 5.640 16 C 0.530 3.470 17 O -0.596 6.596 18 C -0.092 4.092 19 C -0.142 4.142 20 C 0.072 3.928 21 O -0.401 6.401 22 C 0.063 3.937 23 C -0.133 4.133 24 C 0.117 3.883 25 H 0.111 0.889 26 C 0.140 3.860 27 H 0.263 0.737 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.020 -10.986 -16.437 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.216 4.216 3 Si 0.745 3.255 4 H -0.233 1.233 5 H -0.218 1.218 6 H -0.143 1.143 7 C -0.392 4.392 8 H 0.032 0.968 9 N -0.328 5.328 10 C 0.011 3.989 11 C -0.152 4.152 12 C -0.117 4.117 13 H 0.154 0.846 14 C -0.010 4.010 15 N -0.374 5.374 16 C 0.321 3.679 17 O -0.477 6.477 18 C -0.113 4.113 19 C -0.180 4.180 20 C -0.004 4.004 21 O -0.320 6.320 22 C -0.014 4.014 23 C -0.171 4.171 24 C 0.013 3.987 25 H 0.128 0.872 26 C 0.014 3.986 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 13.537 -11.317 -15.727 23.636 hybrid contribution -0.644 1.234 1.377 1.958 sum 12.893 -10.083 -14.350 21.767 Atomic orbital electron populations 1.70203 1.08182 1.27572 1.52516 1.25870 0.95415 1.01042 0.99292 0.86317 0.82075 0.79933 0.77191 1.23286 1.21843 1.14317 1.18506 0.96143 0.94434 1.30073 0.96774 1.43821 1.14917 1.44610 1.29405 1.21376 0.98371 0.92713 0.86438 1.21813 0.96659 0.98350 0.98426 1.22876 1.00467 0.95451 0.92879 0.84637 1.23843 0.98422 0.92253 0.86444 1.50104 1.40744 1.31955 1.14606 1.20787 0.78675 0.79307 0.89139 1.90673 1.64721 1.70699 1.21632 1.21253 0.95465 0.96329 0.98285 1.22032 0.95198 1.00220 1.00548 1.22574 0.94730 0.85079 0.98035 1.87911 1.24210 1.31733 1.88195 1.22784 0.81805 1.00666 0.96110 1.22103 1.00328 0.93348 1.01337 1.22553 0.94520 0.86108 0.95555 0.87183 1.20312 0.91104 0.91902 0.95277 0.92862 0.94147 0.93291 0.94315 0.88278 0.88592 0.85659 0.87227 0.93022 0.92772 0.90748 0.87937 0.90501 0.86499 0.87945 0.92941 0.94971 0.95305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.57 13.97 21.65 0.30 -61.26 16 2 C -0.02 -1.19 4.84 84.86 0.41 -0.78 16 3 Si 0.92 45.49 26.40 68.60 1.81 47.30 16 4 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.22 -9.55 4.86 99.48 0.48 -9.07 16 7 C -0.26 -16.20 9.79 84.03 0.82 -15.38 16 8 H 0.01 1.04 8.02 -2.91 -0.02 1.02 16 9 N -0.60 -29.80 2.71 -707.23 -1.92 -31.71 16 10 C 0.14 5.47 4.30 86.39 0.37 5.85 16 11 C -0.11 -3.32 5.66 30.63 0.17 -3.15 16 12 C -0.10 -2.14 4.39 -10.32 -0.05 -2.18 16 13 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 14 C 0.11 1.89 7.81 86.34 0.67 2.57 16 15 N -0.64 -19.23 3.35 -822.25 -2.75 -21.99 16 16 C 0.53 19.47 6.99 87.66 0.61 20.08 16 17 O -0.60 -29.30 15.44 -3.05 -0.05 -29.34 16 18 C -0.09 -2.49 2.47 -11.42 -0.03 -2.52 16 19 C -0.14 -4.40 5.12 30.68 0.16 -4.24 16 20 C 0.07 1.67 6.84 72.01 0.49 2.16 16 21 O -0.40 -9.40 10.77 -148.98 -1.60 -11.01 16 22 C 0.06 1.03 6.84 72.01 0.49 1.52 16 23 C -0.13 -2.73 5.40 30.68 0.17 -2.57 16 24 C 0.12 3.52 4.22 43.84 0.19 3.71 16 25 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 26 C 0.14 6.04 6.21 85.91 0.53 6.57 16 27 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 28 H 0.04 1.84 5.48 -2.39 -0.01 1.83 16 29 H 0.05 1.81 6.76 -2.39 -0.02 1.79 16 30 H 0.04 1.34 7.69 -2.39 -0.02 1.32 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.10 1.37 7.67 -2.39 -0.02 1.35 16 33 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 2.38 7.59 -2.38 -0.02 2.36 16 35 H 0.05 1.91 7.76 -2.38 -0.02 1.89 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.03 1.50 6.43 -2.39 -0.02 1.49 16 Total: -1.00 -87.25 336.00 1.56 -85.69 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.75 Total: 10.69 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.02 Total: 11.64 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -4.37 Total: -114.96 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.65 Total: -40.35 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.81 Total: 47.30 kcal Total: -87.25 1.56 -85.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084148894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.318 kcal (2) G-P(sol) polarization free energy of solvation -87.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds