Wall clock time and date at job start Fri Apr 10 2020 17:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34951 * 126.54251 * 2 1 4 4 O 1.35202 * 125.49425 * 0.02812 * 3 2 1 5 5 N 1.31528 * 109.01153 * 180.30632 * 3 2 1 6 6 C 1.33234 * 109.76341 * 359.72463 * 5 3 2 7 7 C 1.36716 * 107.95775 * 0.02562 * 6 5 3 8 8 C 1.46379 * 126.82264 * 180.02562 * 7 6 5 9 9 O 1.21730 * 120.00193 * 184.92938 * 8 7 6 10 10 N 1.34776 * 120.00015 * 4.93329 * 8 7 6 11 11 C 1.46501 * 120.00490 * 174.58509 * 10 8 7 12 12 C 1.52993 * 109.47787 * 180.02562 * 11 10 8 13 13 H 1.09007 * 112.90339 * 316.25070 * 12 11 10 14 14 C 1.53953 * 113.66969 * 87.54913 * 12 11 10 15 15 C 1.53781 * 87.11121 * 139.89435 * 14 12 11 16 16 H 1.08993 * 113.61521 * 89.18998 * 15 14 12 17 17 N 1.46502 * 113.61403 * 220.09490 * 15 14 12 18 18 C 1.36932 * 119.99984 * 252.50111 * 17 15 14 19 19 H 1.08003 * 120.00143 * 359.97438 * 18 17 15 20 20 C 1.38816 * 120.00345 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00382 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47260 * 59.99951 * 22 20 18 24 24 H 1.48496 * 109.47357 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47219 * 300.00270 * 22 20 18 26 26 C 1.53780 * 113.61719 * 185.00217 * 12 11 10 27 27 H 1.08997 * 109.47373 * 272.51655 * 1 2 3 28 28 H 1.09000 * 109.47213 * 32.51263 * 1 2 3 29 29 H 1.08996 * 109.47209 * 152.51463 * 1 2 3 30 30 H 0.96705 * 114.00350 * 270.29680 * 4 3 2 31 31 H 1.07998 * 126.01873 * 179.97438 * 6 5 3 32 32 H 0.97000 * 120.00378 * 354.58876 * 10 8 7 33 33 H 1.09001 * 109.46743 * 59.99837 * 11 10 8 34 34 H 1.08993 * 109.47053 * 300.00807 * 11 10 8 35 35 H 1.09000 * 113.52982 * 25.34250 * 14 12 11 36 36 H 1.08994 * 113.74421 * 254.48079 * 14 12 11 37 37 H 0.96997 * 119.99939 * 72.49706 * 17 15 14 38 38 H 0.97000 * 120.00278 * 180.02562 * 21 20 18 39 39 H 1.09004 * 113.61157 * 105.46958 * 26 12 11 40 40 H 1.08993 * 113.61625 * 334.65515 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0842 0.0000 4 8 1.8516 2.3703 0.0005 5 7 3.5227 0.6880 -0.0066 6 6 3.5746 -0.6433 -0.0051 7 6 2.2915 -1.1152 0.0024 8 6 1.8725 -2.5177 0.0070 9 8 0.6915 -2.8005 -0.0770 10 7 2.7944 -3.4961 0.1044 11 6 2.3701 -4.8927 0.2287 12 6 3.6028 -5.7940 0.3223 13 1 4.3804 -5.5249 -0.3927 14 6 4.1240 -5.9811 1.7588 15 6 4.3711 -7.4545 1.3942 16 1 5.3590 -7.6402 0.9729 17 7 4.0230 -8.3907 2.4660 18 6 5.0121 -9.0258 3.1683 19 1 6.0489 -8.8370 2.9319 20 6 4.6823 -9.9125 4.1842 21 7 3.4189 -10.1422 4.4727 22 14 6.0316 -10.7794 5.1418 23 1 6.8903 -9.7698 5.8116 24 1 5.4212 -11.6671 6.1639 25 1 6.8561 -11.5911 4.2109 26 6 3.2691 -7.2951 0.3336 27 1 -0.3634 0.0451 1.0266 28 1 -0.3633 0.8666 -0.5524 29 1 -0.3633 -0.9116 -0.4743 30 1 1.7255 2.7434 -0.8827 31 1 4.4722 -1.2439 -0.0098 32 1 3.7389 -3.2755 0.0923 33 1 1.7806 -5.1724 -0.6445 34 1 1.7654 -5.0101 1.1279 35 1 3.3575 -5.8427 2.5213 36 1 5.0369 -5.4246 1.9704 37 1 3.0919 -8.5605 2.6781 38 1 3.1884 -10.7615 5.1829 39 1 3.4921 -7.7990 -0.6069 40 1 2.2691 -7.5173 0.7059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086167847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:37 Heat of formation + Delta-G solvation = 22.405978 kcal Electronic energy + Delta-G solvation = -22665.019919 eV Core-core repulsion = 19096.557822 eV Total energy + Delta-G solvation = -3568.462097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.60244 -39.70357 -38.45051 -37.71990 -35.09356 -34.26039 -33.31938 -30.65095 -29.75024 -27.50498 -27.09517 -25.10967 -24.07502 -23.18990 -22.00585 -21.08393 -20.48688 -19.15406 -18.98000 -17.78316 -17.06120 -16.81253 -16.40579 -15.79055 -15.40578 -15.02810 -14.74486 -14.61474 -14.33126 -13.95363 -13.55557 -13.40803 -13.11069 -13.06733 -12.90897 -12.59997 -11.94949 -11.84574 -11.43745 -11.25640 -10.83868 -10.69974 -10.52608 -10.28896 -10.20167 -10.17529 -10.00346 -9.85245 -9.52949 -9.23183 -8.87901 -8.80731 -6.97683 -5.79163 -3.08116 0.83787 1.80095 2.25510 3.02712 3.09475 3.38032 3.42890 3.47446 3.48454 4.30436 4.37548 4.57548 4.64779 4.81911 4.90328 4.93290 4.97299 5.17767 5.19191 5.44778 5.46759 5.58272 5.76597 5.79403 5.89992 5.97337 6.06219 6.07401 6.17264 6.27631 6.32884 6.38822 6.57890 6.79728 7.05579 7.09079 7.25767 7.41233 7.67794 7.95093 8.39435 9.50413 10.08541 10.42536 11.43146 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.002435 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.696345 B =11497.087695 C =11754.206820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.428 5.428 3 C 0.394 3.606 4 O -0.439 6.439 5 N -0.487 5.487 6 C 0.055 3.945 7 C -0.076 4.076 8 C 0.593 3.407 9 O -0.547 6.547 10 N -0.708 5.708 11 C 0.135 3.865 12 C -0.128 4.128 13 H 0.090 0.910 14 C -0.162 4.162 15 C 0.166 3.834 16 H 0.076 0.924 17 N -0.713 5.713 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.142 4.142 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.404 0.596 31 H 0.187 0.813 32 H 0.403 0.597 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.062 0.938 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 21.764 -13.735 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.121 5.121 3 C 0.094 3.906 4 O -0.240 6.240 5 N -0.215 5.215 6 C -0.100 4.100 7 C -0.192 4.192 8 C 0.379 3.621 9 O -0.426 6.426 10 N -0.359 5.359 11 C 0.012 3.988 12 C -0.147 4.147 13 H 0.109 0.891 14 C -0.203 4.203 15 C 0.054 3.946 16 H 0.094 0.906 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.182 4.182 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.261 0.739 31 H 0.204 0.796 32 H 0.238 0.762 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.296 22.021 -13.064 25.962 hybrid contribution -0.010 -0.613 0.222 0.652 sum -4.305 21.408 -12.841 25.332 Atomic orbital electron populations 1.22315 0.75046 1.05745 1.04588 1.45660 1.08529 1.05586 1.52279 1.20245 0.84500 0.81405 1.04408 1.84840 1.86979 1.17929 1.34224 1.70311 1.16439 1.12825 1.21943 1.22584 0.95527 0.90242 1.01640 1.20643 0.91107 0.88443 1.19028 1.16608 0.85741 0.82933 0.76820 1.90804 1.16977 1.83912 1.50907 1.45679 1.09503 1.06921 1.73787 1.21516 0.97197 0.77808 1.02237 1.22686 0.96583 0.95705 0.99774 0.89144 1.23999 1.00546 1.01667 0.94072 1.21512 0.95813 0.88449 0.88871 0.90614 1.42403 1.06648 1.48790 1.37203 1.19257 0.88556 1.18396 1.11397 0.91129 1.24773 0.96176 1.00321 0.99651 1.69649 1.15290 1.39518 1.33603 0.86262 0.80950 0.79324 0.79607 1.21225 1.21697 1.21227 1.23448 1.01392 0.92908 1.00414 0.89919 0.89633 0.87124 0.73872 0.79575 0.76162 0.91320 0.90931 0.90353 0.92601 0.78070 0.93390 0.91938 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.75 59.85 0.64 1.14 16 2 N -0.43 -4.31 3.20 -122.13 -0.39 -4.71 16 3 C 0.39 4.01 9.01 -89.59 -0.81 3.20 16 4 O -0.44 -3.24 13.53 -17.30 -0.23 -3.47 16 5 N -0.49 -5.62 11.22 -14.62 -0.16 -5.78 16 6 C 0.05 0.54 11.36 -17.49 -0.20 0.35 16 7 C -0.08 -0.83 6.92 -81.98 -0.57 -1.39 16 8 C 0.59 7.19 7.77 -12.99 -0.10 7.09 16 9 O -0.55 -8.17 14.84 5.16 0.08 -8.09 16 10 N -0.71 -7.35 5.54 -61.72 -0.34 -7.69 16 11 C 0.14 1.61 5.52 -4.04 -0.02 1.59 16 12 C -0.13 -1.57 3.76 -89.72 -0.34 -1.91 16 13 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 14 C -0.16 -2.54 7.44 -25.83 -0.19 -2.73 16 15 C 0.17 3.09 4.48 -67.12 -0.30 2.78 16 16 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 17 N -0.71 -17.46 5.40 -52.64 -0.28 -17.74 16 18 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 22 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 C -0.14 -2.13 7.39 -25.92 -0.19 -2.32 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.11 0.99 6.30 -51.93 -0.33 0.66 16 30 H 0.40 0.75 9.06 45.56 0.41 1.16 16 31 H 0.19 1.22 7.45 -52.49 -0.39 0.83 16 32 H 0.40 3.15 7.40 -40.82 -0.30 2.85 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 35 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.39 10.07 7.92 -40.82 -0.32 9.75 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -35.07 342.56 -7.47 -42.53 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.67 Total: 9.44 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.32 Total: 0.48 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.46 Total: -63.20 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.16 Total: -11.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.07 -7.47 -42.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086167847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.938 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds