Wall clock time and date at job start Fri Apr 10 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48502 * 109.47201 * 270.00592 * 3 2 1 5 5 H 1.48499 * 109.46852 * 30.00666 * 3 2 1 6 6 H 1.48501 * 109.47351 * 150.00539 * 3 2 1 7 7 C 1.38817 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99506 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99435 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.90756 * 23.74996 * 10 9 7 12 12 C 1.53778 * 113.61333 * 155.00086 * 10 9 7 13 13 C 1.53782 * 87.08046 * 139.97888 * 12 10 9 14 14 H 1.09004 * 113.61287 * 89.20601 * 13 12 10 15 15 C 1.53002 * 113.61495 * 220.01957 * 13 12 10 16 16 N 1.46503 * 109.47092 * 185.00357 * 15 13 12 17 17 C 1.34777 * 119.99702 * 180.02562 * 16 15 13 18 18 O 1.21276 * 120.00448 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99413 * 180.02562 * 17 16 15 20 20 H 1.08990 * 110.67022 * 61.76233 * 19 17 16 21 21 C 1.55001 * 110.74652 * 298.54076 * 19 17 16 22 22 C 1.55819 * 102.78905 * 241.67834 * 21 19 17 23 23 H 1.08996 * 115.39062 * 158.83573 * 22 21 19 24 24 C 1.55821 * 105.32994 * 287.31369 * 22 21 19 25 25 C 1.55002 * 102.95099 * 72.59484 * 24 22 21 26 26 C 1.55825 * 110.74290 * 185.17669 * 19 17 16 27 27 H 1.08995 * 115.39121 * 320.20523 * 26 19 17 28 28 O 1.46535 * 101.24527 * 85.90507 * 26 19 17 29 29 C 1.53775 * 87.08113 * 334.56886 * 13 12 10 30 30 H 0.97003 * 120.00323 * 359.97438 * 1 2 3 31 31 H 0.96991 * 120.00148 * 0.02562 * 9 7 2 32 32 H 1.09010 * 113.61188 * 25.43557 * 12 10 9 33 33 H 1.09001 * 113.69484 * 254.54111 * 12 10 9 34 34 H 1.08997 * 109.47382 * 65.00005 * 15 13 12 35 35 H 1.09006 * 109.47092 * 304.99888 * 15 13 12 36 36 H 0.96998 * 120.00113 * 0.02562 * 16 15 13 37 37 H 1.09002 * 110.74595 * 123.36020 * 21 19 17 38 38 H 1.08995 * 110.74976 * 0.02562 * 21 19 17 39 39 H 1.09002 * 110.75099 * 191.01396 * 24 22 21 40 40 H 1.08999 * 110.74965 * 314.18127 * 24 22 21 41 41 H 1.09007 * 110.74571 * 118.42225 * 25 24 22 42 42 H 1.09004 * 110.75000 * 241.76514 * 25 24 22 43 43 H 1.09000 * 113.61282 * 139.97970 * 29 13 12 44 44 H 1.08999 * 113.61479 * 270.87764 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0662 -3.5646 0.4038 12 6 1.2603 -4.8287 0.5949 13 6 1.8482 -5.6975 -0.5296 14 1 2.7981 -6.1646 -0.2693 15 6 0.8451 -6.6851 -1.1291 16 7 1.5264 -7.5431 -2.1018 17 6 0.8361 -8.4949 -2.7607 18 8 -0.3489 -8.6414 -2.5481 19 6 1.5370 -9.3778 -3.7608 20 1 2.3199 -9.9614 -3.2766 21 6 2.1200 -8.5350 -4.9236 22 6 1.3607 -9.0897 -6.1661 23 1 1.3333 -8.4272 -7.0312 24 6 1.9688 -10.5009 -6.4243 25 6 1.3899 -11.3467 -5.2616 26 6 0.5182 -10.3076 -4.4857 27 1 -0.2679 -10.7217 -3.8544 28 8 0.0657 -9.4401 -5.5766 29 6 1.9993 -4.4021 -1.3443 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 0.1799 -4.7002 0.5279 33 1 1.5907 -5.1221 1.5914 34 1 0.0464 -6.1349 -1.6266 35 1 0.4224 -7.3007 -0.3351 36 1 2.4742 -7.4262 -2.2716 37 1 3.1929 -8.7012 -5.0209 38 1 1.9039 -7.4764 -4.7795 39 1 1.6409 -10.8925 -7.3873 40 1 3.0571 -10.4677 -6.3730 41 1 0.7734 -12.1598 -5.6452 42 1 2.1895 -11.7323 -4.6291 43 1 2.9274 -4.3500 -1.9135 44 1 1.1210 -4.1569 -1.9415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086204506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:41 Heat of formation + Delta-G solvation = -44.168465 kcal Electronic energy + Delta-G solvation = -23489.154657 eV Core-core repulsion = 20021.346019 eV Total energy + Delta-G solvation = -3467.808638 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.36082 -39.33453 -38.28732 -34.68931 -33.34836 -32.63936 -31.37657 -30.17495 -29.97263 -27.29095 -25.09672 -24.09174 -23.27851 -21.97634 -21.03746 -20.90635 -20.02169 -19.01556 -17.65189 -17.05004 -16.82842 -16.29844 -15.56879 -15.42407 -15.04675 -14.71722 -14.49683 -14.27580 -13.69096 -13.38381 -13.30181 -12.93518 -12.92183 -12.23722 -12.00362 -11.90018 -11.86131 -11.77727 -11.45729 -11.40152 -11.32880 -11.23255 -10.85211 -10.84076 -10.53369 -10.28264 -10.20119 -10.13161 -9.83566 -9.73446 -9.46753 -9.01138 -8.87138 -6.96946 -5.78689 -3.07682 2.58841 3.07556 3.42155 3.47078 3.49093 3.53999 4.09619 4.19081 4.34425 4.48479 4.57729 4.67608 4.72444 4.80021 4.88929 4.97374 4.99203 5.08050 5.14657 5.23895 5.42144 5.45788 5.46191 5.50509 5.60796 5.64254 5.71371 5.76271 5.82610 5.86059 5.93951 6.08628 6.25917 6.26404 6.31251 6.35840 6.46399 6.58556 6.82300 7.10824 7.47005 7.68178 8.19731 8.39797 9.50777 10.09221 10.43366 11.43701 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.002572 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.928144 B =10884.705703 C =11270.026667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.087 0.913 15 C 0.132 3.868 16 N -0.725 5.725 17 C 0.520 3.480 18 O -0.536 6.536 19 C -0.142 4.142 20 H 0.108 0.892 21 C -0.141 4.141 22 C 0.059 3.941 23 H 0.132 0.868 24 C -0.149 4.149 25 C -0.149 4.149 26 C 0.088 3.912 27 H 0.138 0.862 28 O -0.363 6.363 29 C -0.161 4.161 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -23.959 -9.914 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.009 3.991 16 N -0.376 5.376 17 C 0.306 3.694 18 O -0.412 6.412 19 C -0.163 4.163 20 H 0.126 0.874 21 C -0.179 4.179 22 C 0.001 3.999 23 H 0.150 0.850 24 C -0.187 4.187 25 C -0.187 4.187 26 C 0.030 3.970 27 H 0.155 0.845 28 O -0.282 6.282 29 C -0.202 4.202 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.572 -23.784 -9.782 26.543 hybrid contribution 0.886 0.948 -0.040 1.298 sum 7.458 -22.836 -9.823 25.954 Atomic orbital electron populations 1.69659 1.05148 1.25771 1.57408 1.24777 0.95523 0.97805 1.02840 0.86189 0.78644 0.83821 0.77520 1.21699 1.21747 1.20744 1.19298 0.91045 0.84251 1.42972 0.91116 1.42416 1.05780 0.99886 1.86989 1.21513 0.95287 0.85054 0.92756 0.90695 1.23451 1.01072 0.97031 0.96677 1.22636 0.98339 0.94422 0.99222 0.89448 1.21440 0.95315 0.91567 0.90817 1.46047 1.13148 1.35528 1.42891 1.20306 0.87320 0.80779 0.81044 1.90710 1.15341 1.69994 1.65190 1.23095 0.99582 0.97663 0.96008 0.87359 1.23304 1.00387 1.00600 0.93610 1.24695 0.83095 0.95891 0.96179 0.85048 1.23269 1.00661 0.95516 0.99263 1.23340 0.99620 0.98353 0.97380 1.24598 0.94685 0.89357 0.88351 0.84480 1.90167 1.26346 1.66475 1.45180 1.23948 1.01313 0.94963 0.99961 0.93422 0.78048 0.90110 0.92016 0.91253 0.91831 0.76732 0.89566 0.89947 0.90734 0.90479 0.90419 0.90425 0.92835 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.83 5.40 -52.64 -0.28 -18.12 16 10 C 0.17 3.20 4.48 -67.12 -0.30 2.90 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.14 -2.27 7.39 -25.92 -0.19 -2.46 16 13 C -0.13 -1.68 3.75 -89.81 -0.34 -2.02 16 14 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 16 N -0.73 -8.13 5.47 -60.29 -0.33 -8.46 16 17 C 0.52 6.56 7.01 -10.98 -0.08 6.49 16 18 O -0.54 -9.13 15.88 5.56 0.09 -9.04 16 19 C -0.14 -1.25 2.89 -89.21 -0.26 -1.51 16 20 H 0.11 0.67 7.81 -51.93 -0.41 0.26 16 21 C -0.14 -1.08 6.11 -24.17 -0.15 -1.22 16 22 C 0.06 0.49 5.71 -23.72 -0.14 0.35 16 23 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 24 C -0.15 -0.93 6.51 -24.17 -0.16 -1.08 16 25 C -0.15 -0.99 6.55 -23.93 -0.16 -1.14 16 26 C 0.09 0.86 4.65 -23.48 -0.11 0.75 16 27 H 0.14 1.44 7.71 -51.93 -0.40 1.04 16 28 O -0.36 -4.47 11.65 -35.23 -0.41 -4.88 16 29 C -0.16 -2.64 7.43 -25.92 -0.19 -2.83 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.39 10.31 7.92 -40.82 -0.32 9.98 16 32 H 0.08 1.37 8.08 -51.92 -0.42 0.95 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.40 3.40 8.47 -40.82 -0.35 3.06 16 37 H 0.09 0.44 7.81 -51.93 -0.41 0.03 16 38 H 0.08 0.74 7.73 -51.93 -0.40 0.34 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.35 7.81 -51.93 -0.41 -0.05 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.39 7.81 -51.93 -0.41 -0.02 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 353.93 15.07 5.33 5.33 Total: -1.00 -33.80 353.93 -9.49 -43.29 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.26 Total: 9.59 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.33 Total: -7.45 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.11 Total: -54.14 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.32 Total: -13.92 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.80 -9.49 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086204506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.875 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds