Wall clock time and date at job start Fri Apr 10 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48502 * 109.47201 * 270.00592 * 3 2 1 5 5 H 1.48499 * 109.46852 * 30.00666 * 3 2 1 6 6 H 1.48501 * 109.47351 * 150.00539 * 3 2 1 7 7 C 1.38817 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99506 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99435 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.90756 * 23.74996 * 10 9 7 12 12 C 1.53778 * 113.61333 * 155.00086 * 10 9 7 13 13 C 1.53782 * 87.08046 * 139.97888 * 12 10 9 14 14 H 1.09004 * 113.61287 * 89.20601 * 13 12 10 15 15 C 1.53002 * 113.61495 * 220.01957 * 13 12 10 16 16 N 1.46503 * 109.47092 * 185.00357 * 15 13 12 17 17 C 1.34777 * 119.99702 * 180.02562 * 16 15 13 18 18 O 1.21276 * 120.00448 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99413 * 180.02562 * 17 16 15 20 20 H 1.08990 * 110.67022 * 61.76233 * 19 17 16 21 21 C 1.55001 * 110.74652 * 298.54076 * 19 17 16 22 22 C 1.55819 * 102.78905 * 241.67834 * 21 19 17 23 23 H 1.08996 * 115.39062 * 158.83573 * 22 21 19 24 24 C 1.55821 * 105.32994 * 287.31369 * 22 21 19 25 25 C 1.55002 * 102.95099 * 72.59484 * 24 22 21 26 26 C 1.55825 * 110.74290 * 185.17669 * 19 17 16 27 27 H 1.08995 * 115.39121 * 320.20523 * 26 19 17 28 28 O 1.46535 * 101.24527 * 85.90507 * 26 19 17 29 29 C 1.53775 * 87.08113 * 334.56886 * 13 12 10 30 30 H 0.97003 * 120.00323 * 359.97438 * 1 2 3 31 31 H 0.96991 * 120.00148 * 0.02562 * 9 7 2 32 32 H 1.09010 * 113.61188 * 25.43557 * 12 10 9 33 33 H 1.09001 * 113.69484 * 254.54111 * 12 10 9 34 34 H 1.08997 * 109.47382 * 65.00005 * 15 13 12 35 35 H 1.09006 * 109.47092 * 304.99888 * 15 13 12 36 36 H 0.96998 * 120.00113 * 0.02562 * 16 15 13 37 37 H 1.09002 * 110.74595 * 123.36020 * 21 19 17 38 38 H 1.08995 * 110.74976 * 0.02562 * 21 19 17 39 39 H 1.09002 * 110.75099 * 191.01396 * 24 22 21 40 40 H 1.08999 * 110.74965 * 314.18127 * 24 22 21 41 41 H 1.09007 * 110.74571 * 118.42225 * 25 24 22 42 42 H 1.09004 * 110.75000 * 241.76514 * 25 24 22 43 43 H 1.09000 * 113.61282 * 139.97970 * 29 13 12 44 44 H 1.08999 * 113.61479 * 270.87764 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0662 -3.5646 0.4038 12 6 1.2603 -4.8287 0.5949 13 6 1.8482 -5.6975 -0.5296 14 1 2.7981 -6.1646 -0.2693 15 6 0.8451 -6.6851 -1.1291 16 7 1.5264 -7.5431 -2.1018 17 6 0.8361 -8.4949 -2.7607 18 8 -0.3489 -8.6414 -2.5481 19 6 1.5370 -9.3778 -3.7608 20 1 2.3199 -9.9614 -3.2766 21 6 2.1200 -8.5350 -4.9236 22 6 1.3607 -9.0897 -6.1661 23 1 1.3333 -8.4272 -7.0312 24 6 1.9688 -10.5009 -6.4243 25 6 1.3899 -11.3467 -5.2616 26 6 0.5182 -10.3076 -4.4857 27 1 -0.2679 -10.7217 -3.8544 28 8 0.0657 -9.4401 -5.5766 29 6 1.9993 -4.4021 -1.3443 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 0.1799 -4.7002 0.5279 33 1 1.5907 -5.1221 1.5914 34 1 0.0464 -6.1349 -1.6266 35 1 0.4224 -7.3007 -0.3351 36 1 2.4742 -7.4262 -2.2716 37 1 3.1929 -8.7012 -5.0209 38 1 1.9039 -7.4764 -4.7795 39 1 1.6409 -10.8925 -7.3873 40 1 3.0571 -10.4677 -6.3730 41 1 0.7734 -12.1598 -5.6452 42 1 2.1895 -11.7323 -4.6291 43 1 2.9274 -4.3500 -1.9135 44 1 1.1210 -4.1569 -1.9415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086204506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:41 Heat of formation + Delta-G solvation = -68.655919 kcal Electronic energy + Delta-G solvation = -23490.216513 eV Core-core repulsion = 20021.346019 eV Total energy + Delta-G solvation = -3468.870494 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08505 -40.44980 -39.52717 -36.06194 -35.04485 -33.43037 -32.33722 -31.74005 -30.58425 -28.56729 -26.46767 -25.88797 -24.17865 -22.72333 -22.30894 -21.62444 -20.94945 -20.33806 -19.05919 -18.44344 -17.59537 -17.30893 -16.69300 -16.44601 -16.13319 -16.07760 -15.63875 -15.34997 -15.10888 -14.87523 -14.40565 -14.21805 -13.54918 -13.44185 -13.25279 -13.07343 -12.92695 -12.77501 -12.62411 -12.55902 -12.45382 -12.20284 -12.08184 -12.04072 -11.87009 -11.59514 -11.56047 -11.45322 -11.10617 -10.93020 -10.83684 -10.64095 -10.07712 -8.98565 -7.94871 -5.23532 1.46933 1.48886 1.57298 1.62351 2.16807 2.56564 2.89999 3.36776 3.42096 3.56060 3.69441 3.73044 3.74590 3.88616 3.94906 4.05794 4.13768 4.24722 4.27567 4.34528 4.41329 4.42114 4.49944 4.55010 4.62816 4.76401 4.88208 4.96615 4.97803 4.99804 5.02518 5.04270 5.11773 5.16412 5.21470 5.25399 5.36139 5.43860 5.52849 5.66912 5.73083 6.27294 6.57292 7.26943 7.32512 8.10938 8.32578 9.28850 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.002572 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.928144 B =10884.705703 C =11270.026667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.144 3.856 11 H 0.084 0.916 12 C -0.138 4.138 13 C -0.093 4.093 14 H 0.126 0.874 15 C 0.138 3.862 16 N -0.712 5.712 17 C 0.513 3.487 18 O -0.590 6.590 19 C -0.133 4.133 20 H 0.147 0.853 21 C -0.135 4.135 22 C 0.046 3.954 23 H 0.137 0.863 24 C -0.141 4.141 25 C -0.140 4.140 26 C 0.073 3.927 27 H 0.115 0.885 28 O -0.410 6.410 29 C -0.153 4.153 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.416 0.584 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.310 -25.734 -10.327 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.102 0.898 12 C -0.178 4.178 13 C -0.112 4.112 14 H 0.144 0.856 15 C 0.014 3.986 16 N -0.364 5.364 17 C 0.301 3.699 18 O -0.470 6.470 19 C -0.154 4.154 20 H 0.164 0.836 21 C -0.173 4.173 22 C -0.011 4.011 23 H 0.155 0.845 24 C -0.179 4.179 25 C -0.178 4.178 26 C 0.015 3.985 27 H 0.133 0.867 28 O -0.330 6.330 29 C -0.194 4.194 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.253 0.747 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.406 -25.607 -10.206 29.465 hybrid contribution -0.300 1.436 0.079 1.469 sum 10.106 -24.171 -10.128 28.088 Atomic orbital electron populations 1.69831 1.06810 1.26025 1.59811 1.25628 0.96367 1.01362 1.03983 0.85122 0.77788 0.79393 0.77370 1.21530 1.22485 1.19018 1.19748 0.91642 0.85322 1.40610 0.90133 1.42657 1.05341 1.01334 1.87510 1.21963 0.95683 0.83772 0.95136 0.89834 1.23340 0.99791 0.96069 0.98601 1.22469 0.99432 0.92874 0.96413 0.85642 1.21192 0.94817 0.91609 0.91031 1.45895 1.13878 1.34594 1.41996 1.21107 0.86859 0.80867 0.81100 1.90691 1.17866 1.71519 1.66903 1.23152 0.99739 0.97137 0.95335 0.83558 1.23341 1.02364 0.99118 0.92434 1.24992 0.81867 0.97582 0.96640 0.84516 1.23263 1.02037 0.93572 0.98986 1.23324 0.99642 0.97377 0.97418 1.24698 0.94982 0.90472 0.88321 0.86674 1.90127 1.29155 1.67380 1.46311 1.23717 1.00971 0.96156 0.98563 0.94126 0.79771 0.91867 0.90146 0.94348 0.91840 0.74656 0.85737 0.91787 0.90722 0.87737 0.90582 0.87820 0.91107 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.28 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.37 9.97 84.03 0.84 -12.53 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.73 -37.08 5.40 -320.45 -1.73 -38.82 16 10 C 0.14 5.40 4.48 45.52 0.20 5.60 16 11 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 12 C -0.14 -4.25 7.39 31.12 0.23 -4.02 16 13 C -0.09 -2.24 3.75 -10.27 -0.04 -2.27 16 14 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.14 3.54 5.51 86.38 0.48 4.02 16 16 N -0.71 -14.60 5.47 -463.05 -2.53 -17.13 16 17 C 0.51 12.55 7.01 87.66 0.61 13.17 16 18 O -0.59 -20.79 15.88 -3.02 -0.05 -20.84 16 19 C -0.13 -2.03 2.89 -9.88 -0.03 -2.06 16 20 H 0.15 1.12 7.81 -2.39 -0.02 1.10 16 21 C -0.13 -1.67 6.11 32.25 0.20 -1.47 16 22 C 0.05 0.69 5.71 32.54 0.19 0.88 16 23 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 24 C -0.14 -1.30 6.51 32.25 0.21 -1.09 16 25 C -0.14 -1.49 6.55 32.41 0.21 -1.27 16 26 C 0.07 1.38 4.65 32.70 0.15 1.54 16 27 H 0.12 2.58 7.71 -2.39 -0.02 2.56 16 28 O -0.41 -10.24 11.65 -148.98 -1.74 -11.98 16 29 C -0.15 -4.85 7.43 31.12 0.23 -4.62 16 30 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.37 20.60 7.92 -92.71 -0.73 19.86 16 32 H 0.06 2.18 8.08 -2.38 -0.02 2.16 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.04 1.24 7.84 -2.39 -0.02 1.22 16 35 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.42 5.59 8.47 -92.71 -0.79 4.80 16 37 H 0.12 0.60 7.81 -2.39 -0.02 0.59 16 38 H 0.06 1.04 7.73 -2.39 -0.02 1.02 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.42 7.81 -2.39 -0.02 0.40 16 41 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.10 0.57 7.81 -2.38 -0.02 0.55 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.91 7.90 -2.39 -0.02 1.89 16 Total: -1.00 -77.68 353.93 -0.30 -77.98 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.52 Total: 31.46 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 3.95 Total: -8.40 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.98 Total: -116.52 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.78 Total: -32.81 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -77.68 -0.30 -77.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086204506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.329 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds