Wall clock time and date at job start Fri Apr 10 2020 17:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36342 * 126.19970 * 2 1 4 4 C 1.36247 * 106.88695 * 180.02562 * 3 2 1 5 5 C 1.47241 * 126.16586 * 179.97438 * 4 3 2 6 6 O 1.21646 * 120.00053 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00327 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00104 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47015 * 180.02562 * 8 7 5 10 10 H 1.09004 * 112.85164 * 316.19339 * 9 8 7 11 11 C 1.53778 * 113.61726 * 87.50646 * 9 8 7 12 12 C 1.53778 * 87.08449 * 139.98071 * 11 9 8 13 13 H 1.08993 * 113.61229 * 220.02023 * 12 11 9 14 14 N 1.46501 * 113.61560 * 89.11214 * 12 11 9 15 15 C 1.36935 * 119.99683 * 107.50122 * 14 12 11 16 16 H 1.08001 * 120.00145 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00128 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99828 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00379 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47028 * 59.99701 * 19 17 15 21 21 H 1.48495 * 109.47295 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46888 * 299.99936 * 19 17 15 23 23 C 1.53784 * 87.08081 * 334.56700 * 12 11 9 24 24 N 1.36033 * 107.66691 * 0.23810 * 4 3 2 25 25 C 1.30698 * 108.94934 * 359.59774 * 24 4 3 26 26 O 1.35455 * 125.55617 * 180.15078 * 25 24 4 27 27 H 1.08997 * 109.47298 * 89.99937 * 1 2 3 28 28 H 1.08998 * 109.47325 * 210.00360 * 1 2 3 29 29 H 1.08998 * 109.47126 * 330.00305 * 1 2 3 30 30 H 1.08001 * 126.55191 * 0.02562 * 3 2 1 31 31 H 0.97004 * 119.99767 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47131 * 60.00613 * 8 7 5 33 33 H 1.09005 * 109.47637 * 300.00155 * 8 7 5 34 34 H 1.08999 * 113.61111 * 254.53134 * 11 9 8 35 35 H 1.08999 * 113.61280 * 25.34517 * 11 9 8 36 36 H 0.96998 * 120.00259 * 287.50678 * 14 12 11 37 37 H 0.97006 * 119.99921 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.61451 * 270.88641 * 23 12 11 39 39 H 1.08994 * 113.61477 * 139.97943 * 23 12 11 40 40 H 0.96695 * 114.00340 * 270.29550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1002 0.0000 4 6 3.5561 0.6496 -0.0006 5 6 4.7692 1.4841 -0.0013 6 8 4.6733 2.6967 -0.0010 7 7 5.9859 0.9044 -0.0013 8 6 7.1929 1.7346 -0.0027 9 6 8.4306 0.8352 -0.0030 10 1 8.3474 0.0003 0.6928 11 6 8.8920 0.4226 -1.4107 12 6 10.3326 0.6251 -0.9125 13 1 10.9863 1.0962 -1.6465 14 7 10.9204 -0.5754 -0.3128 15 6 11.8914 -1.2704 -0.9831 16 1 12.2242 -0.9332 -1.9536 17 6 12.4479 -2.4081 -0.4151 18 7 12.0426 -2.8187 0.7679 19 14 13.7731 -3.3558 -1.3292 20 1 14.9390 -2.4683 -1.5706 21 1 14.1994 -4.5216 -0.5141 22 1 13.2346 -3.8304 -2.6292 23 6 9.7542 1.6086 0.1185 24 7 3.5170 -0.7101 -0.0063 25 6 2.2692 -1.0989 -0.0005 26 8 1.8449 -2.3853 -0.0007 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9500 2.1317 0.0004 31 1 6.0624 -0.0627 -0.0012 32 1 7.2015 2.3646 0.8868 33 1 7.2007 2.3632 -0.8932 34 1 8.6579 -0.6121 -1.6611 35 1 8.5955 1.1242 -2.1904 36 1 10.6216 -0.8780 0.5590 37 1 12.4313 -3.6141 1.1647 38 1 9.6948 2.6353 -0.2429 39 1 10.2163 1.5314 1.1027 40 1 1.7215 -2.7586 -0.8841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086466518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:55 Heat of formation + Delta-G solvation = 22.330279 kcal Electronic energy + Delta-G solvation = -22626.970149 eV Core-core repulsion = 19058.504769 eV Total energy + Delta-G solvation = -3568.465380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.48163 -39.46395 -38.34900 -37.59095 -34.67368 -34.39450 -33.09130 -30.18780 -29.47152 -28.14232 -26.82843 -24.97018 -23.89840 -23.07671 -21.81343 -21.45616 -20.25771 -18.94279 -18.32964 -17.66829 -17.19218 -16.59269 -16.06798 -15.73893 -15.21703 -14.79085 -14.78621 -14.67888 -14.11753 -14.00617 -13.48549 -13.36082 -13.28447 -12.84341 -12.80479 -12.29584 -12.17761 -11.83436 -11.30766 -10.98542 -10.78884 -10.62002 -10.42357 -10.19442 -10.16728 -10.14228 -9.75614 -9.63083 -9.39290 -8.98277 -8.83334 -8.69495 -6.94500 -5.75462 -3.04354 1.24480 1.81794 2.05807 3.14160 3.44502 3.46023 3.50191 3.51378 3.60323 4.19782 4.29794 4.54486 4.60244 4.82731 4.84610 5.08484 5.16652 5.20453 5.34251 5.50475 5.51032 5.73173 5.78326 5.91027 5.97593 6.06657 6.14220 6.19540 6.29243 6.45466 6.54334 6.68062 6.84125 6.98546 7.12896 7.14164 7.31296 7.73050 7.74113 8.31878 8.43786 9.54144 10.12570 10.46786 11.46960 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.002792 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.301159 B =10026.513735 C =11124.605272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.465 5.465 3 C 0.041 3.959 4 C -0.044 4.044 5 C 0.601 3.399 6 O -0.550 6.550 7 N -0.707 5.707 8 C 0.131 3.869 9 C -0.120 4.120 10 H 0.094 0.906 11 C -0.168 4.168 12 C 0.167 3.833 13 H 0.062 0.938 14 N -0.706 5.706 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.147 4.147 24 N -0.451 5.451 25 C 0.378 3.622 26 O -0.439 6.439 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.196 0.804 31 H 0.411 0.589 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.776 6.937 -2.579 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.160 5.160 3 C -0.096 4.096 4 C -0.173 4.173 5 C 0.386 3.614 6 O -0.429 6.429 7 N -0.357 5.357 8 C 0.008 3.992 9 C -0.139 4.139 10 H 0.112 0.888 11 C -0.209 4.209 12 C 0.055 3.945 13 H 0.080 0.920 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.187 4.187 24 N -0.181 5.181 25 C 0.077 3.923 26 O -0.239 6.239 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.213 0.787 31 H 0.247 0.753 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -25.096 7.099 -2.075 26.163 hybrid contribution -0.381 -0.953 -0.636 1.208 sum -25.477 6.146 -2.711 26.347 Atomic orbital electron populations 1.22146 0.75767 1.05467 1.04042 1.45852 1.08383 1.06585 1.55204 1.22644 0.89718 0.92433 1.04846 1.20491 0.93665 0.89498 1.13628 1.16809 0.82012 0.86237 0.76346 1.90793 1.86919 1.13217 1.51957 1.45884 1.05081 1.11491 1.73212 1.21518 0.82612 0.93302 1.01770 1.22716 0.92513 0.98747 0.99881 0.88805 1.23886 1.01355 1.01164 0.94518 1.21053 0.91444 0.88258 0.93739 0.92011 1.42166 1.44317 1.26643 1.21304 1.19245 1.12288 1.05145 1.00607 0.91069 1.24764 1.00421 0.98748 0.96998 1.69657 1.45786 1.26217 1.16416 0.86245 0.81712 0.79388 0.78700 1.21237 1.21712 1.21248 1.23445 0.95345 0.98513 1.01410 1.70915 1.16819 1.11036 1.19342 1.20296 0.84075 0.81524 1.06415 1.84903 1.86673 1.18087 1.34269 0.90058 0.88854 0.88973 0.78740 0.75317 0.91683 0.91452 0.91488 0.91428 0.78072 0.93409 0.90457 0.91340 0.74009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.11 59.85 0.66 0.88 16 2 N -0.47 -3.70 3.16 -125.77 -0.40 -4.10 16 3 C 0.04 0.40 11.29 -16.26 -0.18 0.21 16 4 C -0.04 -0.57 6.97 -83.06 -0.58 -1.15 16 5 C 0.60 9.06 7.81 -12.60 -0.10 8.96 16 6 O -0.55 -9.40 16.88 5.24 0.09 -9.31 16 7 N -0.71 -10.36 5.55 -61.44 -0.34 -10.70 16 8 C 0.13 1.91 5.51 -4.04 -0.02 1.89 16 9 C -0.12 -1.92 3.63 -89.80 -0.33 -2.25 16 10 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 11 C -0.17 -2.95 7.43 -25.92 -0.19 -3.14 16 12 C 0.17 3.36 4.56 -67.12 -0.31 3.05 16 13 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 14 N -0.71 -17.82 5.31 -52.64 -0.28 -18.10 16 15 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 19 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.15 -2.45 7.39 -25.91 -0.19 -2.64 16 24 N -0.45 -6.06 11.03 -11.22 -0.12 -6.18 16 25 C 0.38 3.95 9.03 -89.17 -0.81 3.14 16 26 O -0.44 -3.50 13.55 -18.06 -0.24 -3.75 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.41 5.99 8.18 -40.82 -0.33 5.65 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 36 H 0.39 10.30 7.90 -40.82 -0.32 9.98 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.40 1.14 9.06 45.56 0.41 1.56 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -35.73 347.87 -7.47 -43.20 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.83 Total: 12.25 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.29 Total: 1.56 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -0.42 Total: -66.70 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.16 Total: -13.06 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.73 -7.47 -43.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086466518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.534 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds