Wall clock time and date at job start Fri Apr 10 2020 17:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36342 * 126.19970 * 2 1 4 4 C 1.36247 * 106.88695 * 180.02562 * 3 2 1 5 5 C 1.47241 * 126.16586 * 179.97438 * 4 3 2 6 6 O 1.21646 * 120.00053 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00327 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00104 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47015 * 180.02562 * 8 7 5 10 10 H 1.09004 * 112.85164 * 316.19339 * 9 8 7 11 11 C 1.53778 * 113.61726 * 87.50646 * 9 8 7 12 12 C 1.53778 * 87.08449 * 139.98071 * 11 9 8 13 13 H 1.08993 * 113.61229 * 220.02023 * 12 11 9 14 14 N 1.46501 * 113.61560 * 89.11214 * 12 11 9 15 15 C 1.36935 * 119.99683 * 107.50122 * 14 12 11 16 16 H 1.08001 * 120.00145 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00128 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99828 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00379 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47028 * 59.99701 * 19 17 15 21 21 H 1.48495 * 109.47295 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46888 * 299.99936 * 19 17 15 23 23 C 1.53784 * 87.08081 * 334.56700 * 12 11 9 24 24 N 1.36033 * 107.66691 * 0.23810 * 4 3 2 25 25 C 1.30698 * 108.94934 * 359.59774 * 24 4 3 26 26 O 1.35455 * 125.55617 * 180.15078 * 25 24 4 27 27 H 1.08997 * 109.47298 * 89.99937 * 1 2 3 28 28 H 1.08998 * 109.47325 * 210.00360 * 1 2 3 29 29 H 1.08998 * 109.47126 * 330.00305 * 1 2 3 30 30 H 1.08001 * 126.55191 * 0.02562 * 3 2 1 31 31 H 0.97004 * 119.99767 * 0.02562 * 7 5 4 32 32 H 1.08996 * 109.47131 * 60.00613 * 8 7 5 33 33 H 1.09005 * 109.47637 * 300.00155 * 8 7 5 34 34 H 1.08999 * 113.61111 * 254.53134 * 11 9 8 35 35 H 1.08999 * 113.61280 * 25.34517 * 11 9 8 36 36 H 0.96998 * 120.00259 * 287.50678 * 14 12 11 37 37 H 0.97006 * 119.99921 * 179.97438 * 18 17 15 38 38 H 1.09004 * 113.61451 * 270.88641 * 23 12 11 39 39 H 1.08994 * 113.61477 * 139.97943 * 23 12 11 40 40 H 0.96695 * 114.00340 * 270.29550 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2702 1.1002 0.0000 4 6 3.5561 0.6496 -0.0006 5 6 4.7692 1.4841 -0.0013 6 8 4.6733 2.6967 -0.0010 7 7 5.9859 0.9044 -0.0013 8 6 7.1929 1.7346 -0.0027 9 6 8.4306 0.8352 -0.0030 10 1 8.3474 0.0003 0.6928 11 6 8.8920 0.4226 -1.4107 12 6 10.3326 0.6251 -0.9125 13 1 10.9863 1.0962 -1.6465 14 7 10.9204 -0.5754 -0.3128 15 6 11.8914 -1.2704 -0.9831 16 1 12.2242 -0.9332 -1.9536 17 6 12.4479 -2.4081 -0.4151 18 7 12.0426 -2.8187 0.7679 19 14 13.7731 -3.3558 -1.3292 20 1 14.9390 -2.4683 -1.5706 21 1 14.1994 -4.5216 -0.5141 22 1 13.2346 -3.8304 -2.6292 23 6 9.7542 1.6086 0.1185 24 7 3.5170 -0.7101 -0.0063 25 6 2.2692 -1.0989 -0.0005 26 8 1.8449 -2.3853 -0.0007 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9500 2.1317 0.0004 31 1 6.0624 -0.0627 -0.0012 32 1 7.2015 2.3646 0.8868 33 1 7.2007 2.3632 -0.8932 34 1 8.6579 -0.6121 -1.6611 35 1 8.5955 1.1242 -2.1904 36 1 10.6216 -0.8780 0.5590 37 1 12.4313 -3.6141 1.1647 38 1 9.6948 2.6353 -0.2429 39 1 10.2163 1.5314 1.1027 40 1 1.7215 -2.7586 -0.8841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086466518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:54 Heat of formation + Delta-G solvation = -7.590545 kcal Electronic energy + Delta-G solvation = -22628.267613 eV Core-core repulsion = 19058.504769 eV Total energy + Delta-G solvation = -3569.762844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.22426 -40.69052 -39.71824 -38.25589 -35.98445 -35.26071 -34.80390 -32.07629 -30.36810 -29.08481 -27.72817 -26.41472 -25.73125 -24.25090 -22.91743 -22.39179 -21.29383 -19.90956 -19.52578 -19.27285 -18.51265 -17.40224 -17.08005 -16.65278 -16.61574 -16.28984 -15.74134 -15.68978 -15.34794 -15.30978 -14.79469 -14.64493 -14.52787 -13.77135 -13.56695 -13.48600 -13.25067 -12.93990 -12.90531 -12.89496 -12.59638 -12.19332 -12.06102 -11.63387 -11.48581 -11.40877 -11.10887 -10.89519 -10.85130 -10.75527 -10.09269 -9.56534 -8.98977 -7.93885 -5.22527 0.46052 1.04465 1.39954 1.47957 1.51256 1.57285 2.18911 2.42660 2.56950 2.81842 3.38269 3.61248 3.73398 3.78032 3.81681 3.91542 4.10603 4.17440 4.34234 4.37088 4.41177 4.44042 4.70524 4.74664 4.79026 4.86838 4.94889 5.00740 5.13405 5.22662 5.29897 5.37382 5.49570 5.56608 5.62809 5.68332 6.29455 6.40477 6.60687 6.71474 7.19557 7.34002 8.11802 8.33976 9.29412 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.002792 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.301159 B =10026.513735 C =11124.605272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.455 5.455 3 C 0.063 3.937 4 C -0.085 4.085 5 C 0.600 3.400 6 O -0.576 6.576 7 N -0.710 5.710 8 C 0.140 3.860 9 C -0.106 4.106 10 H 0.075 0.925 11 C -0.154 4.154 12 C 0.145 3.855 13 H 0.063 0.937 14 N -0.721 5.721 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.975 3.025 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.278 1.278 23 C -0.131 4.131 24 N -0.494 5.494 25 C 0.377 3.623 26 O -0.443 6.443 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.221 0.779 31 H 0.410 0.590 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.674 7.927 -3.641 29.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.148 5.148 3 C -0.076 4.076 4 C -0.213 4.213 5 C 0.387 3.613 6 O -0.457 6.457 7 N -0.359 5.359 8 C 0.017 3.983 9 C -0.124 4.124 10 H 0.093 0.907 11 C -0.195 4.195 12 C 0.035 3.965 13 H 0.081 0.919 14 N -0.359 5.359 15 C -0.375 4.375 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.804 3.196 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.204 1.204 23 C -0.170 4.170 24 N -0.225 5.225 25 C 0.075 3.925 26 O -0.247 6.247 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.238 0.762 31 H 0.245 0.755 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -27.041 8.108 -3.188 28.409 hybrid contribution 0.067 -1.247 -0.345 1.295 sum -26.973 6.861 -3.532 28.055 Atomic orbital electron populations 1.22548 0.72590 1.06930 1.05936 1.46066 1.10061 1.05249 1.53426 1.23018 0.88797 0.93739 1.02093 1.20334 0.94107 0.89638 1.17194 1.17087 0.82535 0.86178 0.75494 1.90759 1.87354 1.14169 1.53425 1.45900 1.05273 1.11388 1.73304 1.21387 0.81866 0.92790 1.02236 1.22501 0.93312 0.98288 0.98348 0.90714 1.23727 0.99190 1.00495 0.96051 1.21385 0.92452 0.87545 0.95147 0.91873 1.42321 1.44427 1.28165 1.20967 1.19658 1.12095 1.05050 1.00697 0.90454 1.25593 1.03158 1.00166 0.98047 1.69822 1.47476 1.26700 1.18130 0.85190 0.79204 0.77767 0.77476 1.20262 1.22268 1.20425 1.23341 0.94494 0.99335 0.99842 1.70774 1.19079 1.11503 1.21117 1.20346 0.83967 0.82628 1.05599 1.84863 1.86358 1.17146 1.36315 0.87908 0.88036 0.86958 0.76218 0.75476 0.91376 0.90728 0.93881 0.88792 0.79464 0.94036 0.87173 0.92349 0.71481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.17 11.11 127.77 1.42 1.59 16 2 N -0.45 -6.20 3.16 -662.75 -2.09 -8.29 16 3 C 0.06 1.11 11.29 83.53 0.94 2.06 16 4 C -0.08 -2.20 6.97 40.40 0.28 -1.91 16 5 C 0.60 18.01 7.81 86.61 0.68 18.68 16 6 O -0.58 -19.35 16.88 -4.18 -0.07 -19.42 16 7 N -0.71 -20.83 5.55 -466.53 -2.59 -23.42 16 8 C 0.14 3.96 5.51 86.38 0.48 4.43 16 9 C -0.11 -3.34 3.63 -10.27 -0.04 -3.38 16 10 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 11 C -0.15 -5.31 7.43 31.12 0.23 -5.07 16 12 C 0.14 5.75 4.56 45.52 0.21 5.96 16 13 H 0.06 2.48 8.10 -2.39 -0.02 2.46 16 14 N -0.72 -37.04 5.31 -320.45 -1.70 -38.74 16 15 C -0.24 -13.73 9.97 84.03 0.84 -12.89 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 17 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 18 N -0.97 -60.48 13.06 21.65 0.28 -60.20 16 19 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 C -0.13 -4.20 7.39 31.12 0.23 -3.97 16 24 N -0.49 -13.23 11.03 -303.18 -3.34 -16.58 16 25 C 0.38 7.42 9.03 179.84 1.62 9.04 16 26 O -0.44 -6.43 13.55 -87.53 -1.19 -7.61 16 27 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.22 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.41 12.27 8.18 -92.71 -0.76 11.51 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.03 7.84 -2.38 -0.02 2.01 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.75 7.89 -2.39 -0.02 2.74 16 36 H 0.37 20.64 7.90 -92.71 -0.73 19.91 16 37 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 38 H 0.11 2.84 8.10 -2.39 -0.02 2.82 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.42 1.70 9.06 -74.06 -0.67 1.03 16 Total: -1.00 -78.63 347.87 -2.39 -81.02 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -1.07 Total: 33.95 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 7.36 Total: 10.48 kcal Atomic # 7 Polarization: -137.78 SS G_CDS: -9.45 Total: -147.23 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -1.26 Total: -27.03 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -78.63 -2.39 -81.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086466518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.431 kcal (2) G-P(sol) polarization free energy of solvation -78.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds