Wall clock time and date at job start Fri Apr 10 2020 17:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99605 * 2 1 4 4 H 1.48499 * 109.46715 * 239.99746 * 3 2 1 5 5 H 1.48494 * 109.47135 * 119.99957 * 3 2 1 6 6 H 1.48498 * 109.47296 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99588 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99505 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99520 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.84814 * 25.33447 * 10 9 7 12 12 C 1.53779 * 113.61255 * 156.53233 * 10 9 7 13 13 C 1.53777 * 87.08138 * 89.11777 * 12 10 9 14 14 H 1.09002 * 113.61584 * 270.88293 * 13 12 10 15 15 C 1.52998 * 113.61563 * 140.06549 * 13 12 10 16 16 N 1.46496 * 109.47281 * 174.99793 * 15 13 12 17 17 C 1.34777 * 120.00203 * 179.97438 * 16 15 13 18 18 O 1.21288 * 120.00058 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00332 * 180.02562 * 17 16 15 20 20 H 1.09003 * 115.56219 * 12.74018 * 19 17 16 21 21 C 1.53176 * 117.52232 * 158.51324 * 19 17 16 22 22 C 1.52127 * 59.77757 * 107.42269 * 21 19 17 23 23 C 1.54029 * 121.47769 * 249.14375 * 22 21 19 24 24 C 1.55190 * 101.83273 * 195.69744 * 23 22 21 25 25 O 1.44455 * 103.62933 * 36.32825 * 24 23 22 26 26 C 1.43994 * 107.04774 * 320.43182 * 25 24 23 27 27 C 1.53777 * 113.61574 * 254.13741 * 10 9 7 28 28 H 0.96997 * 119.99608 * 179.97438 * 1 2 3 29 29 H 0.96995 * 120.00809 * 0.02562 * 9 7 2 30 30 H 1.08994 * 113.61350 * 203.66805 * 12 10 9 31 31 H 1.08999 * 113.61534 * 334.56444 * 12 10 9 32 32 H 1.09008 * 109.47011 * 294.99892 * 15 13 12 33 33 H 1.09000 * 109.47220 * 54.99911 * 15 13 12 34 34 H 0.97005 * 120.00256 * 359.97438 * 16 15 13 35 35 H 1.09008 * 117.52491 * 214.84585 * 21 19 17 36 36 H 1.09000 * 117.52458 * 0.02562 * 21 19 17 37 37 H 1.09006 * 110.96087 * 313.83057 * 23 22 21 38 38 H 1.08996 * 110.96080 * 77.55843 * 23 22 21 39 39 H 1.09008 * 110.58559 * 277.79039 * 24 23 22 40 40 H 1.08990 * 110.72178 * 154.92840 * 24 23 22 41 41 H 1.09001 * 109.97236 * 266.93646 * 26 25 24 42 42 H 1.09002 * 109.99973 * 145.68781 * 26 25 24 43 43 H 1.09002 * 113.61221 * 25.43497 * 27 10 9 44 44 H 1.09001 * 113.61623 * 156.33198 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 3.1039 1.6966 1.2125 6 1 1.2851 2.7465 -0.0006 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0561 -3.5693 0.4304 12 6 1.2470 -4.8365 0.5617 13 6 0.7403 -5.0678 -0.8717 14 1 -0.1650 -4.5096 -1.1102 15 6 0.6463 -6.5453 -1.2576 16 7 0.0452 -6.6652 -2.5882 17 6 -0.1376 -7.8821 -3.1379 18 8 0.1951 -8.8780 -2.5308 19 6 -0.7554 -8.0055 -4.5069 20 1 -0.8281 -7.0783 -5.0754 21 6 -0.4923 -9.2963 -5.2884 22 6 -1.8646 -9.0311 -4.6878 23 6 -2.3965 -9.8570 -3.5014 24 6 -3.9106 -9.5177 -3.5310 25 8 -4.2092 -9.4159 -4.9407 26 6 -3.0930 -8.7513 -5.5617 27 6 2.0328 -4.3828 -1.3548 28 1 -0.4849 -0.8401 -0.0004 29 1 0.3557 -2.3881 -0.0002 30 1 1.8650 -5.6493 0.9428 31 1 0.4643 -4.5361 1.2583 32 1 1.6450 -6.9820 -1.2693 33 1 0.0279 -7.0720 -0.5308 34 1 -0.2213 -5.8688 -3.0736 35 1 -0.3928 -9.2182 -6.3712 36 1 0.1273 -10.0562 -4.8121 37 1 -2.2326 -10.9224 -3.6634 38 1 -1.9424 -9.5321 -2.5654 39 1 -4.1006 -8.5688 -3.0293 40 1 -4.4937 -10.3161 -3.0723 41 1 -3.2787 -7.6783 -5.6104 42 1 -2.9343 -9.1473 -6.5648 43 1 1.8841 -3.7163 -2.2044 44 1 2.8653 -5.0719 -1.4968 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086529849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:02 Heat of formation + Delta-G solvation = -28.299547 kcal Electronic energy + Delta-G solvation = -23300.334276 eV Core-core repulsion = 19833.213765 eV Total energy + Delta-G solvation = -3467.120511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84785 -39.35085 -38.53570 -36.12335 -34.77575 -33.54326 -30.65128 -30.08394 -28.23115 -27.29367 -25.20911 -24.24785 -23.34602 -23.05689 -21.80397 -20.73272 -19.75930 -18.59953 -17.53737 -17.17763 -16.76951 -16.40203 -15.85337 -15.40987 -15.30565 -14.95547 -14.71924 -14.00558 -13.80355 -13.72913 -13.60882 -13.24837 -13.03478 -12.88952 -12.57101 -12.28184 -12.08768 -11.74802 -11.52736 -11.31865 -10.99011 -10.82808 -10.79756 -10.45922 -10.41233 -10.21185 -10.01342 -10.00571 -9.86593 -9.68083 -9.21601 -9.08879 -8.93289 -7.12364 -6.17831 -3.18466 2.22076 2.97985 3.43518 3.47990 3.51096 3.56544 3.68724 4.00694 4.27381 4.36239 4.54846 4.60183 4.71666 4.85585 4.90967 4.94200 5.05571 5.06405 5.10775 5.27629 5.32479 5.38443 5.41800 5.44757 5.47415 5.53153 5.61790 5.67576 5.74486 5.77849 5.83719 5.92859 6.08413 6.21671 6.30236 6.45755 6.46656 6.60044 6.73577 6.89196 7.39752 7.76174 8.08648 8.67670 9.14456 10.00664 10.15005 11.30085 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.002622 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.839418 B =10677.801843 C =11127.809132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.334 4.334 8 H 0.066 0.934 9 N -0.717 5.717 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.090 0.910 15 C 0.132 3.868 16 N -0.719 5.719 17 C 0.540 3.460 18 O -0.543 6.543 19 C -0.177 4.177 20 H 0.124 0.876 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.123 4.123 24 C 0.047 3.953 25 O -0.377 6.377 26 C 0.084 3.916 27 C -0.168 4.168 28 H 0.254 0.746 29 H 0.368 0.632 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.403 0.597 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.538 -19.202 -9.800 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.465 4.465 8 H 0.084 0.916 9 N -0.358 5.358 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.109 0.891 15 C 0.009 3.991 16 N -0.370 5.370 17 C 0.327 3.673 18 O -0.422 6.422 19 C -0.198 4.198 20 H 0.142 0.858 21 C -0.161 4.161 22 C -0.135 4.135 23 C -0.160 4.160 24 C -0.029 4.029 25 O -0.296 6.296 26 C 0.007 3.993 27 C -0.209 4.209 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.237 0.763 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.418 -18.246 -9.420 20.817 hybrid contribution 0.030 -1.117 -0.196 1.134 sum -3.388 -19.363 -9.616 21.883 Atomic orbital electron populations 1.70901 1.06049 1.28378 1.53389 1.25817 0.97034 1.01087 1.00224 0.83234 0.74232 0.75503 0.75929 1.22212 1.22168 1.20994 1.20080 0.92131 0.85624 1.48675 0.91572 1.42175 1.04684 1.00433 1.88460 1.20981 0.95019 0.85128 0.92845 0.91911 1.23436 1.00585 0.99790 0.94934 1.22753 0.99499 0.93114 0.98491 0.89137 1.21476 0.98054 0.96999 0.82611 1.46014 1.63030 1.08129 1.19781 1.19532 0.78149 0.83339 0.86303 1.90680 1.51210 1.36798 1.63469 1.22333 1.04193 0.96583 0.96716 0.85794 1.22948 0.96870 0.96848 0.99445 1.22150 0.91104 1.00420 0.99801 1.22677 0.95104 1.00334 0.97867 1.23615 0.95048 1.01489 0.82768 1.88923 1.40453 1.79759 1.20422 1.22560 0.83263 0.97430 0.96020 1.23922 0.95515 0.99562 1.01867 0.93450 0.79875 0.90247 0.91456 0.91472 0.91825 0.76276 0.87421 0.87091 0.89732 0.88930 0.91992 0.88713 0.91631 0.89121 0.91529 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.60 13.70 55.49 0.76 -27.84 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.33 -9.22 9.97 -15.06 -0.15 -9.37 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -17.45 5.31 -52.64 -0.28 -17.73 16 10 C 0.17 3.33 4.55 -67.12 -0.31 3.03 16 11 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 12 C -0.15 -2.31 7.38 -25.92 -0.19 -2.50 16 13 C -0.12 -1.72 3.64 -89.67 -0.33 -2.05 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 15 C 0.13 1.69 5.51 -4.05 -0.02 1.67 16 16 N -0.72 -8.33 5.56 -60.29 -0.33 -8.66 16 17 C 0.54 6.56 6.93 -10.99 -0.08 6.48 16 18 O -0.54 -8.24 14.74 5.55 0.08 -8.16 16 19 C -0.18 -1.62 6.09 -92.12 -0.56 -2.18 16 20 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 21 C -0.12 -1.01 9.82 -27.08 -0.27 -1.28 16 22 C -0.13 -1.19 2.42 -154.68 -0.37 -1.56 16 23 C -0.12 -1.18 6.49 -25.03 -0.16 -1.34 16 24 C 0.05 0.43 7.73 38.32 0.30 0.72 16 25 O -0.38 -3.97 11.53 -35.23 -0.41 -4.38 16 26 C 0.08 0.70 7.50 37.33 0.28 0.98 16 27 C -0.17 -2.74 7.45 -25.78 -0.19 -2.93 16 28 H 0.25 7.57 6.77 -40.82 -0.28 7.29 16 29 H 0.37 9.17 6.73 -40.82 -0.27 8.89 16 30 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.90 7.85 -51.92 -0.41 0.49 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 4.05 8.47 -40.82 -0.35 3.70 16 35 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.11 1.04 7.84 -51.93 -0.41 0.63 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.05 6.02 -51.93 -0.31 0.74 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -32.61 358.28 -9.15 -41.75 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.13 Total: 10.91 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.15 Total: -11.68 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.15 Total: -54.23 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.32 Total: -12.54 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.61 -9.15 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086529849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.455 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds