Wall clock time and date at job start Fri Apr 10 2020 17:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48497 * 109.47182 * 269.99892 * 3 2 1 5 5 H 1.48506 * 109.47304 * 29.99573 * 3 2 1 6 6 H 1.48499 * 109.47278 * 149.99640 * 3 2 1 7 7 C 1.38808 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00240 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.90573 * 23.74508 * 10 9 7 12 12 C 1.53783 * 113.61142 * 154.99536 * 10 9 7 13 13 C 1.53786 * 87.08136 * 89.11608 * 12 10 9 14 14 H 1.08998 * 113.61476 * 270.80407 * 13 12 10 15 15 C 1.53002 * 113.61777 * 139.97519 * 13 12 10 16 16 N 1.46494 * 109.47001 * 175.00123 * 15 13 12 17 17 C 1.34784 * 119.99635 * 180.02562 * 16 15 13 18 18 O 1.21279 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99961 * 180.02562 * 17 16 15 20 20 H 1.09001 * 115.56155 * 34.38163 * 19 17 16 21 21 C 1.53184 * 117.52031 * 248.60822 * 19 17 16 22 22 C 1.52106 * 117.52298 * 180.24486 * 19 17 16 23 23 C 1.53706 * 121.73479 * 218.52419 * 22 19 17 24 24 C 1.54703 * 103.69384 * 143.46499 * 23 22 19 25 25 O 1.44487 * 104.86839 * 23.84356 * 24 23 22 26 26 C 1.44644 * 105.46588 * 320.02401 * 25 24 23 27 27 C 1.53776 * 113.61252 * 252.49082 * 10 9 7 28 28 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99610 * 359.97438 * 9 7 2 30 30 H 1.08994 * 113.61631 * 334.57047 * 12 10 9 31 31 H 1.08999 * 113.69029 * 203.67463 * 12 10 9 32 32 H 1.09005 * 109.46767 * 55.00189 * 15 13 12 33 33 H 1.09002 * 109.47113 * 295.00529 * 15 13 12 34 34 H 0.96995 * 120.00292 * 0.27801 * 16 15 13 35 35 H 1.09003 * 117.52367 * 0.02562 * 21 19 17 36 36 H 1.09004 * 117.51855 * 145.09887 * 21 19 17 37 37 H 1.08997 * 110.58226 * 262.01394 * 23 22 19 38 38 H 1.08999 * 110.58462 * 24.90817 * 23 22 19 39 39 H 1.09005 * 110.35861 * 142.69302 * 24 23 22 40 40 H 1.08998 * 110.35578 * 264.99603 * 24 23 22 41 41 H 1.08994 * 110.41799 * 280.88064 * 26 25 24 42 42 H 1.08997 * 110.41651 * 158.41999 * 26 25 24 43 43 H 1.09008 * 113.61439 * 156.33490 * 27 10 9 44 44 H 1.09001 * 113.61664 * 25.43919 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0022 11 1 3.5285 -3.2980 -0.4017 12 6 5.5263 -2.3661 -0.5929 13 6 6.0125 -2.0228 0.8251 14 1 5.9882 -0.9563 1.0488 15 6 7.3467 -2.6765 1.1907 16 7 7.7813 -2.1972 2.5049 17 6 8.9387 -2.6403 3.0348 18 8 9.6200 -3.4361 2.4238 19 6 9.3857 -2.1477 4.3871 20 1 8.5879 -1.9521 5.1037 21 6 10.6206 -1.2428 4.4381 22 6 10.7034 -2.6802 4.9289 23 6 10.8889 -3.0165 6.4172 24 6 11.7985 -4.2677 6.3993 25 8 12.4974 -4.2000 5.1365 26 6 11.5157 -3.7458 4.1763 27 6 4.7867 -2.7914 1.3464 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3620 0.0007 30 1 5.6413 -1.5480 -1.3039 31 1 5.9138 -3.3124 -0.9702 32 1 8.0958 -2.4160 0.4429 33 1 7.2246 -3.7592 1.2208 34 1 7.2345 -1.5638 2.9954 35 1 11.1092 -1.0037 3.4935 36 1 10.6350 -0.4521 5.1883 37 1 11.3791 -2.1939 6.9377 38 1 9.9295 -3.2468 6.8805 39 1 12.5069 -4.2334 7.2272 40 1 11.1966 -5.1749 6.4515 41 1 10.8714 -4.5705 3.8721 42 1 12.0077 -3.3063 3.3085 43 1 4.9709 -3.8547 1.4999 44 1 4.3047 -2.3166 2.2011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086529851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:07 Heat of formation + Delta-G solvation = -46.125818 kcal Electronic energy + Delta-G solvation = -23227.922424 eV Core-core repulsion = 19760.028908 eV Total energy + Delta-G solvation = -3467.893516 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59846 -40.42228 -39.60077 -36.87178 -36.02456 -34.96352 -32.67436 -31.33333 -29.38543 -28.11152 -26.47020 -25.77079 -24.69176 -23.63340 -23.00901 -21.54985 -20.57576 -19.99730 -19.56746 -18.19904 -17.39768 -17.02473 -16.75591 -16.46602 -16.28518 -16.13688 -16.02597 -15.40400 -14.98928 -14.95997 -14.62305 -14.38985 -14.10575 -13.99493 -13.41769 -13.31562 -13.16252 -13.09486 -13.01815 -12.69246 -12.37950 -12.19035 -11.99928 -11.88600 -11.65286 -11.58199 -11.48313 -11.09065 -10.98869 -10.91637 -10.81359 -10.49311 -10.05718 -9.30251 -8.02990 -5.36915 1.36984 1.41778 1.44113 1.48748 2.10094 2.47964 2.66882 3.06763 3.27107 3.31515 3.50657 3.65335 3.71569 3.73528 3.80901 3.90085 4.00160 4.05239 4.24241 4.26768 4.36781 4.44757 4.52218 4.69365 4.69920 4.75452 4.77671 4.83372 4.88769 4.91973 4.93005 4.96854 5.06228 5.08049 5.08535 5.25970 5.31909 5.49731 5.54327 5.80389 5.81760 6.22273 6.54186 7.07480 7.21993 7.84119 8.02924 9.18511 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029292 B = 0.002600 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.677317 B =10766.412178 C =11140.053928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.233 4.233 8 H 0.055 0.945 9 N -0.733 5.733 10 C 0.145 3.855 11 H 0.056 0.944 12 C -0.134 4.134 13 C -0.104 4.104 14 H 0.091 0.909 15 C 0.139 3.861 16 N -0.714 5.714 17 C 0.534 3.466 18 O -0.578 6.578 19 C -0.173 4.173 20 H 0.153 0.847 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.113 4.113 24 C 0.037 3.963 25 O -0.404 6.404 26 C 0.093 3.907 27 C -0.154 4.154 28 H 0.258 0.742 29 H 0.367 0.633 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.413 0.587 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.947 -3.350 13.284 28.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.171 1.171 7 C -0.364 4.364 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.035 3.965 11 H 0.074 0.926 12 C -0.173 4.173 13 C -0.123 4.123 14 H 0.109 0.891 15 C 0.016 3.984 16 N -0.364 5.364 17 C 0.322 3.678 18 O -0.459 6.459 19 C -0.194 4.194 20 H 0.171 0.829 21 C -0.156 4.156 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.040 4.040 25 O -0.324 6.324 26 C 0.017 3.983 27 C -0.195 4.195 28 H 0.067 0.933 29 H 0.201 0.799 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.249 0.751 35 H 0.112 0.888 36 H 0.154 0.846 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.408 -4.056 12.779 28.729 hybrid contribution -0.851 1.175 -0.104 1.454 sum 24.557 -2.881 12.675 27.785 Atomic orbital electron populations 1.69888 1.07243 1.26734 1.59630 1.25542 0.96144 1.01412 1.02651 0.85383 0.78749 0.79393 0.78063 1.20636 1.22367 1.17127 1.19059 0.82620 0.93435 1.41272 0.92649 1.42426 1.02229 1.03503 1.89349 1.21338 0.91584 0.87807 0.95730 0.92560 1.23364 0.95411 1.02930 0.95634 1.22569 0.92428 0.99846 0.97429 0.89125 1.21289 0.94784 0.98458 0.83880 1.45948 1.22784 1.47099 1.20595 1.20142 0.80528 0.80271 0.86882 1.90676 1.55584 1.35921 1.63700 1.22305 0.94099 1.07164 0.95798 0.82913 1.23090 0.96086 0.92608 1.03825 1.22178 0.97677 0.97285 0.97041 1.22461 1.01576 0.98862 0.92096 1.23658 0.95883 0.97641 0.86778 1.89136 1.34982 1.88381 1.19887 1.22678 0.89412 0.95158 0.91063 1.23704 0.96633 1.00126 0.98999 0.93333 0.79924 0.91407 0.87672 0.91755 0.91756 0.75066 0.88760 0.84590 0.88312 0.88474 0.87193 0.92071 0.92459 0.90229 0.89225 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.43 13.97 21.65 0.30 -62.13 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 44.00 27.74 68.60 1.90 45.91 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.25 -9.94 6.52 99.48 0.65 -9.30 16 7 C -0.23 -12.98 10.45 84.03 0.88 -12.10 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.73 -32.51 5.11 -320.46 -1.64 -34.15 16 10 C 0.14 5.09 4.56 45.52 0.21 5.29 16 11 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 12 C -0.13 -3.52 7.39 31.12 0.23 -3.29 16 13 C -0.10 -2.47 3.63 -10.26 -0.04 -2.50 16 14 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.14 2.98 5.51 86.38 0.48 3.45 16 16 N -0.71 -13.48 5.56 -463.05 -2.57 -16.06 16 17 C 0.53 11.30 7.61 87.66 0.67 11.97 16 18 O -0.58 -16.50 13.83 -3.03 -0.04 -16.54 16 19 C -0.17 -2.48 6.08 -11.77 -0.07 -2.55 16 20 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 21 C -0.12 -1.47 10.00 30.36 0.30 -1.17 16 22 C -0.14 -2.20 2.50 -52.30 -0.13 -2.33 16 23 C -0.11 -1.22 6.88 31.41 0.22 -1.01 16 24 C 0.04 0.52 7.65 72.56 0.56 1.07 16 25 O -0.40 -9.05 11.65 -148.98 -1.74 -10.78 16 26 C 0.09 2.06 5.65 72.21 0.41 2.47 16 27 C -0.15 -4.39 7.43 31.12 0.23 -4.16 16 28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.37 15.40 5.76 -92.71 -0.53 14.87 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.06 1.47 7.84 -2.39 -0.02 1.45 16 34 H 0.41 6.16 8.47 -92.71 -0.79 5.37 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 1.48 7.04 -2.39 -0.02 1.46 16 42 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 43 H 0.09 2.26 7.90 -2.38 -0.02 2.24 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.68 356.62 0.24 -72.44 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.38 Total: 29.52 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.40 Total: -8.21 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.91 Total: -112.33 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -1.78 Total: -27.32 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.91 kcal Total: -72.68 0.24 -72.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086529851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.311 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds