Wall clock time and date at job start Fri Apr 10 2020 17:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48492 * 109.46776 * 239.99561 * 3 2 1 5 5 H 1.48493 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46962 * 119.99925 * 3 2 1 7 7 C 1.38820 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99792 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01911 * 33.60941 * 10 9 7 12 12 C 1.54271 * 110.03292 * 272.16522 * 10 9 7 13 13 C 1.54886 * 104.19664 * 264.32595 * 12 10 9 14 14 C 1.54889 * 102.74978 * 322.05675 * 13 12 10 15 15 H 1.09004 * 110.59790 * 279.20923 * 14 13 12 16 16 C 1.52997 * 110.48671 * 156.61963 * 14 13 12 17 17 N 1.46500 * 109.47107 * 70.22446 * 16 14 13 18 18 C 1.34779 * 120.00346 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99698 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.52999 * 120.24838 * 247.78879 * 20 18 17 22 22 C 1.53001 * 60.65269 * 247.86114 * 21 20 18 23 23 H 1.08998 * 119.80152 * 112.30977 * 22 21 20 24 24 C 1.54472 * 118.54156 * 269.86549 * 22 21 20 25 25 O 1.44136 * 105.11300 * 86.02706 * 24 22 21 26 26 C 1.44428 * 105.42937 * 320.28403 * 25 24 22 27 27 C 1.53882 * 110.03321 * 155.00236 * 10 9 7 28 28 H 0.97001 * 119.99892 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00304 * 0.02562 * 9 7 2 30 30 H 1.09008 * 110.48227 * 23.00518 * 12 10 9 31 31 H 1.08998 * 110.48252 * 145.51112 * 12 10 9 32 32 H 1.09002 * 110.75483 * 203.73904 * 13 12 10 33 33 H 1.09001 * 110.75747 * 80.37325 * 13 12 10 34 34 H 1.08998 * 109.47593 * 310.22587 * 16 14 13 35 35 H 1.09000 * 109.47092 * 190.22133 * 16 14 13 36 36 H 0.97006 * 119.99594 * 0.02562 * 17 16 14 37 37 H 1.08995 * 117.42884 * 355.54134 * 21 20 18 38 38 H 1.09004 * 117.42870 * 140.18521 * 21 20 18 39 39 H 1.09000 * 110.37288 * 205.66258 * 24 22 21 40 40 H 1.08992 * 110.37526 * 327.89177 * 24 22 21 41 41 H 1.09002 * 110.37130 * 281.15297 * 26 25 24 42 42 H 1.08999 * 110.37385 * 158.92700 * 26 25 24 43 43 H 1.09005 * 110.02838 * 359.97438 * 27 10 9 44 44 H 1.08995 * 110.02824 * 238.56939 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9828 -3.5533 0.5692 12 6 2.3708 -4.0878 -1.4462 13 6 1.2227 -5.0622 -1.8089 14 6 0.9999 -5.8356 -0.4856 15 1 1.7393 -6.6289 -0.3759 16 6 -0.4156 -6.4139 -0.4352 17 7 -0.5319 -7.5057 -1.4052 18 6 -1.6979 -8.1687 -1.5371 19 8 -2.6510 -7.8612 -0.8531 20 6 -1.8173 -9.2921 -2.5344 21 6 -2.7115 -9.1374 -3.7662 22 6 -3.1020 -10.1386 -2.6771 23 1 -3.9891 -9.9596 -2.0695 24 6 -2.5849 -11.5898 -2.7889 25 8 -1.2818 -11.5730 -2.1730 26 6 -0.6752 -10.3308 -2.5913 27 6 1.1863 -4.7682 0.6124 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.3627 -3.2242 -2.1114 31 1 3.3341 -4.5955 -1.4934 32 1 1.5287 -5.7401 -2.6058 33 1 0.3246 -4.5129 -2.0913 34 1 -1.1361 -5.6332 -0.6790 35 1 -0.6172 -6.7946 0.5661 36 1 0.2306 -7.7518 -1.9520 37 1 -3.3034 -8.2256 -3.8457 38 1 -2.3415 -9.5401 -4.7091 39 1 -3.2538 -12.2725 -2.2649 40 1 -2.4916 -11.8799 -3.8354 41 1 -0.2925 -10.4189 -3.6081 42 1 0.1265 -10.0510 -1.9078 43 1 0.2185 -4.3634 0.9084 44 1 1.6885 -5.2045 1.4758 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086701326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:13 Heat of formation + Delta-G solvation = -47.230866 kcal Electronic energy + Delta-G solvation = -23533.236807 eV Core-core repulsion = 20065.295373 eV Total energy + Delta-G solvation = -3467.941434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16690 -39.17272 -38.02344 -35.17298 -34.79458 -33.29532 -30.80719 -29.57675 -28.75006 -27.32014 -25.86052 -24.76707 -23.25366 -22.75144 -21.47141 -20.31614 -19.59207 -19.09798 -17.81715 -17.10036 -16.44176 -16.06386 -15.89060 -15.26954 -15.23712 -14.79065 -14.70883 -14.37936 -13.80980 -13.52151 -13.41295 -13.22724 -13.03548 -12.65112 -12.33297 -12.18417 -11.68244 -11.41197 -11.21102 -11.14514 -10.84853 -10.73279 -10.66595 -10.59683 -10.50800 -10.27140 -10.23025 -10.12821 -9.96720 -9.77614 -9.61339 -9.11806 -8.87112 -6.93009 -5.75319 -3.03698 2.28769 2.90010 3.10489 3.44119 3.48664 3.49741 3.56537 3.94644 4.04884 4.40703 4.54856 4.59432 4.59813 4.85365 4.87996 4.95162 5.08537 5.17782 5.18018 5.21544 5.27690 5.43286 5.55216 5.56488 5.69000 5.71998 5.74427 5.90568 6.00648 6.07794 6.11125 6.21192 6.24164 6.34318 6.37283 6.46648 6.65633 6.75015 6.91424 7.10245 7.37726 7.71381 8.08878 8.43978 9.54392 10.14071 10.47966 11.47255 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.002644 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.843956 B =10586.298825 C =10863.420222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.112 4.112 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.719 5.719 18 C 0.558 3.442 19 O -0.536 6.536 20 C -0.212 4.212 21 C -0.105 4.105 22 C -0.159 4.159 23 H 0.132 0.868 24 C 0.073 3.927 25 O -0.368 6.368 26 C 0.085 3.915 27 C -0.121 4.121 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 -23.347 -8.270 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.150 4.150 14 C -0.122 4.122 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.370 5.370 18 C 0.343 3.657 19 O -0.413 6.413 20 C -0.215 4.215 21 C -0.142 4.142 22 C -0.178 4.178 23 H 0.150 0.850 24 C -0.004 4.004 25 O -0.287 6.287 26 C 0.009 3.991 27 C -0.160 4.160 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.343 -23.113 -7.572 24.434 hybrid contribution 0.442 1.125 -0.367 1.263 sum -1.901 -21.988 -7.939 23.455 Atomic orbital electron populations 1.69653 1.05091 1.25740 1.57666 1.24744 0.95495 0.97662 1.03109 0.86284 0.78518 0.83679 0.77805 1.21339 1.21740 1.21304 1.19213 0.90966 0.84238 1.42654 0.91284 1.42541 1.05657 0.99703 1.88285 1.20799 0.94122 0.86075 0.92599 0.93374 1.23121 0.96005 0.98632 1.00927 1.22495 0.99976 0.97388 0.95113 1.22237 0.94540 0.97815 0.97603 0.90700 1.21574 0.97751 0.88481 0.91905 1.45946 1.13475 1.35824 1.41718 1.18993 0.82895 0.81539 0.82251 1.90728 1.38081 1.66954 1.45532 1.23336 0.95470 0.99963 1.02766 1.23165 0.98476 1.00640 0.91917 1.24356 0.98240 0.91561 1.03610 0.85003 1.22922 0.84728 0.94321 0.98403 1.89147 1.28854 1.38369 1.72304 1.22842 0.93643 0.81669 1.00988 1.22471 1.01491 0.95415 0.96665 0.93481 0.78266 0.90970 0.93317 0.92996 0.91315 0.90873 0.91533 0.76611 0.87005 0.87528 0.88017 0.91658 0.90923 0.88320 0.90894 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.80 5.08 -52.34 -0.27 -18.06 16 10 C 0.17 3.36 3.55 -66.81 -0.24 3.12 16 11 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 12 C -0.15 -2.47 6.54 -25.07 -0.16 -2.63 16 13 C -0.11 -1.57 6.19 -24.74 -0.15 -1.73 16 14 C -0.10 -1.31 2.89 -88.96 -0.26 -1.57 16 15 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.13 1.64 4.96 -4.04 -0.02 1.62 16 17 N -0.72 -7.97 5.29 -60.30 -0.32 -8.29 16 18 C 0.56 7.15 7.47 -10.98 -0.08 7.07 16 19 O -0.54 -9.15 16.85 5.56 0.09 -9.06 16 20 C -0.21 -1.99 2.85 -154.09 -0.44 -2.43 16 21 C -0.10 -0.77 9.91 -26.73 -0.26 -1.04 16 22 C -0.16 -1.35 6.89 -89.06 -0.61 -1.96 16 23 H 0.13 1.24 8.14 -51.93 -0.42 0.81 16 24 C 0.07 0.53 7.44 37.93 0.28 0.81 16 25 O -0.37 -3.64 11.64 -35.23 -0.41 -4.05 16 26 C 0.09 0.68 7.04 37.94 0.27 0.94 16 27 C -0.12 -1.92 6.14 -25.61 -0.16 -2.08 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.38 10.13 7.52 -40.82 -0.31 9.82 16 30 H 0.07 1.42 8.04 -51.92 -0.42 1.00 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 34 H 0.07 1.11 8.02 -51.93 -0.42 0.70 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.40 3.35 7.96 -40.82 -0.32 3.03 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.73 7.61 -51.93 -0.40 0.33 16 43 H 0.07 1.27 7.31 -51.93 -0.38 0.89 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -33.25 358.30 -9.15 -42.40 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.27 Total: 8.94 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.08 Total: -7.12 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.14 Total: -53.89 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.32 Total: -13.11 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.25 -9.15 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086701326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.829 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds