Wall clock time and date at job start Fri Apr 10 2020 17:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48492 * 109.46776 * 239.99561 * 3 2 1 5 5 H 1.48493 * 109.47224 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46962 * 119.99925 * 3 2 1 7 7 C 1.38820 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99792 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01911 * 33.60941 * 10 9 7 12 12 C 1.54271 * 110.03292 * 272.16522 * 10 9 7 13 13 C 1.54886 * 104.19664 * 264.32595 * 12 10 9 14 14 C 1.54889 * 102.74978 * 322.05675 * 13 12 10 15 15 H 1.09004 * 110.59790 * 279.20923 * 14 13 12 16 16 C 1.52997 * 110.48671 * 156.61963 * 14 13 12 17 17 N 1.46500 * 109.47107 * 70.22446 * 16 14 13 18 18 C 1.34779 * 120.00346 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99698 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00196 * 180.02562 * 18 17 16 21 21 C 1.52999 * 120.24838 * 247.78879 * 20 18 17 22 22 C 1.53001 * 60.65269 * 247.86114 * 21 20 18 23 23 H 1.08998 * 119.80152 * 112.30977 * 22 21 20 24 24 C 1.54472 * 118.54156 * 269.86549 * 22 21 20 25 25 O 1.44136 * 105.11300 * 86.02706 * 24 22 21 26 26 C 1.44428 * 105.42937 * 320.28403 * 25 24 22 27 27 C 1.53882 * 110.03321 * 155.00236 * 10 9 7 28 28 H 0.97001 * 119.99892 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00304 * 0.02562 * 9 7 2 30 30 H 1.09008 * 110.48227 * 23.00518 * 12 10 9 31 31 H 1.08998 * 110.48252 * 145.51112 * 12 10 9 32 32 H 1.09002 * 110.75483 * 203.73904 * 13 12 10 33 33 H 1.09001 * 110.75747 * 80.37325 * 13 12 10 34 34 H 1.08998 * 109.47593 * 310.22587 * 16 14 13 35 35 H 1.09000 * 109.47092 * 190.22133 * 16 14 13 36 36 H 0.97006 * 119.99594 * 0.02562 * 17 16 14 37 37 H 1.08995 * 117.42884 * 355.54134 * 21 20 18 38 38 H 1.09004 * 117.42870 * 140.18521 * 21 20 18 39 39 H 1.09000 * 110.37288 * 205.66258 * 24 22 21 40 40 H 1.08992 * 110.37526 * 327.89177 * 24 22 21 41 41 H 1.09002 * 110.37130 * 281.15297 * 26 25 24 42 42 H 1.08999 * 110.37385 * 158.92700 * 26 25 24 43 43 H 1.09005 * 110.02838 * 359.97438 * 27 10 9 44 44 H 1.08995 * 110.02824 * 238.56939 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9828 -3.5533 0.5692 12 6 2.3708 -4.0878 -1.4462 13 6 1.2227 -5.0622 -1.8089 14 6 0.9999 -5.8356 -0.4856 15 1 1.7393 -6.6289 -0.3759 16 6 -0.4156 -6.4139 -0.4352 17 7 -0.5319 -7.5057 -1.4052 18 6 -1.6979 -8.1687 -1.5371 19 8 -2.6510 -7.8612 -0.8531 20 6 -1.8173 -9.2921 -2.5344 21 6 -2.7115 -9.1374 -3.7662 22 6 -3.1020 -10.1386 -2.6771 23 1 -3.9891 -9.9596 -2.0695 24 6 -2.5849 -11.5898 -2.7889 25 8 -1.2818 -11.5730 -2.1730 26 6 -0.6752 -10.3308 -2.5913 27 6 1.1863 -4.7682 0.6124 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.3627 -3.2242 -2.1114 31 1 3.3341 -4.5955 -1.4934 32 1 1.5287 -5.7401 -2.6058 33 1 0.3246 -4.5129 -2.0913 34 1 -1.1361 -5.6332 -0.6790 35 1 -0.6172 -6.7946 0.5661 36 1 0.2306 -7.7518 -1.9520 37 1 -3.3034 -8.2256 -3.8457 38 1 -2.3415 -9.5401 -4.7091 39 1 -3.2538 -12.2725 -2.2649 40 1 -2.4916 -11.8799 -3.8354 41 1 -0.2925 -10.4189 -3.6081 42 1 0.1265 -10.0510 -1.9078 43 1 0.2185 -4.3634 0.9084 44 1 1.6885 -5.2045 1.4758 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086701326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:13 Heat of formation + Delta-G solvation = -70.825864 kcal Electronic energy + Delta-G solvation = -23534.259963 eV Core-core repulsion = 20065.295373 eV Total energy + Delta-G solvation = -3468.964590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90686 -40.18300 -39.28201 -36.37654 -35.64159 -34.98760 -32.55310 -30.66460 -29.69489 -28.77891 -26.50228 -26.02915 -25.08110 -23.70593 -22.09316 -21.40558 -20.85903 -20.34357 -19.13760 -18.58014 -17.42854 -16.98514 -16.75310 -16.46623 -16.29605 -15.98645 -15.85905 -15.47693 -15.16558 -15.04692 -14.50646 -14.22413 -14.20524 -13.69538 -13.51914 -13.15396 -13.00145 -12.94305 -12.46592 -12.40141 -12.26713 -12.17737 -11.97719 -11.81039 -11.73462 -11.62078 -11.50863 -11.40669 -11.34277 -10.91172 -10.87395 -10.57735 -10.17076 -8.96597 -7.93247 -5.20829 1.37554 1.46020 1.49008 1.55108 2.01333 2.37369 2.56860 2.99374 3.35998 3.38437 3.39925 3.62221 3.67991 3.78687 3.85802 3.95846 4.00050 4.19574 4.35637 4.41325 4.51959 4.56907 4.63149 4.65583 4.68041 4.68266 4.78102 4.79432 4.83521 4.87301 4.92549 5.07837 5.08662 5.13561 5.22539 5.32470 5.44712 5.51135 5.57471 5.66864 5.69400 6.30122 6.47707 7.15289 7.34565 8.14981 8.35652 9.30355 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.002644 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.843956 B =10586.298825 C =10863.420222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.735 5.735 10 C 0.161 3.839 11 H 0.044 0.956 12 C -0.139 4.139 13 C -0.105 4.105 14 C -0.083 4.083 15 H 0.112 0.888 16 C 0.133 3.867 17 N -0.704 5.704 18 C 0.551 3.449 19 O -0.590 6.590 20 C -0.224 4.224 21 C -0.086 4.086 22 C -0.167 4.167 23 H 0.113 0.887 24 C 0.074 3.926 25 O -0.394 6.394 26 C 0.088 3.912 27 C -0.118 4.118 28 H 0.249 0.751 29 H 0.369 0.631 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.417 0.583 37 H 0.101 0.899 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -25.648 -9.856 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.053 3.947 11 H 0.062 0.938 12 C -0.179 4.179 13 C -0.142 4.142 14 C -0.101 4.101 15 H 0.130 0.870 16 C 0.009 3.991 17 N -0.355 5.355 18 C 0.338 3.662 19 O -0.470 6.470 20 C -0.227 4.227 21 C -0.123 4.123 22 C -0.186 4.186 23 H 0.131 0.869 24 C -0.002 4.002 25 O -0.313 6.313 26 C 0.012 3.988 27 C -0.157 4.157 28 H 0.058 0.942 29 H 0.201 0.799 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.255 0.745 37 H 0.119 0.881 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.161 -25.467 -9.184 27.073 hybrid contribution -0.204 1.787 0.161 1.806 sum -0.364 -23.680 -9.023 25.343 Atomic orbital electron populations 1.69825 1.06670 1.25938 1.59971 1.25562 0.96330 1.01115 1.04233 0.85232 0.77159 0.79339 0.78194 1.20369 1.22463 1.20406 1.19622 0.91421 0.85408 1.40399 0.90639 1.42769 1.05215 1.01064 1.88462 1.21147 0.94008 0.84982 0.94563 0.93754 1.22953 0.98656 0.98323 0.97962 1.22436 0.97693 0.97241 0.96854 1.22106 0.95031 0.97547 0.95453 0.86990 1.21317 0.97272 0.88331 0.92152 1.45769 1.13846 1.34712 1.41167 1.19665 0.82323 0.82007 0.82164 1.90703 1.39870 1.68707 1.47765 1.23340 0.96986 0.99345 1.03061 1.23282 0.96792 0.99761 0.92430 1.24430 0.97276 0.92744 1.04150 0.86921 1.23063 0.83896 0.93290 0.99915 1.89119 1.29871 1.39096 1.73204 1.22990 0.92745 0.80281 1.02800 1.22388 0.99714 0.95251 0.98323 0.94214 0.79874 0.94325 0.90185 0.89155 0.94156 0.93857 0.92120 0.74533 0.88085 0.84160 0.87417 0.89005 0.87875 0.87986 0.93339 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.97 46.72 29.55 68.60 2.03 48.74 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.21 9.96 84.04 0.84 -12.37 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.21 5.08 -319.49 -1.62 -38.83 16 10 C 0.16 6.13 3.55 45.72 0.16 6.29 16 11 H 0.04 1.71 8.09 -2.39 -0.02 1.69 16 12 C -0.14 -4.46 6.54 31.67 0.21 -4.25 16 13 C -0.10 -2.72 6.19 31.88 0.20 -2.52 16 14 C -0.08 -1.92 2.89 -9.72 -0.03 -1.95 16 15 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.13 3.41 4.96 86.38 0.43 3.84 16 17 N -0.70 -14.48 5.29 -463.06 -2.45 -16.93 16 18 C 0.55 13.87 7.47 87.66 0.65 14.52 16 19 O -0.59 -20.87 16.85 -3.03 -0.05 -20.93 16 20 C -0.22 -3.81 2.85 -51.91 -0.15 -3.96 16 21 C -0.09 -1.07 9.91 30.59 0.30 -0.76 16 22 C -0.17 -2.64 6.89 -9.78 -0.07 -2.71 16 23 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 24 C 0.07 0.91 7.44 72.48 0.54 1.45 16 25 O -0.39 -6.82 11.64 -148.98 -1.73 -8.55 16 26 C 0.09 1.12 7.04 72.49 0.51 1.63 16 27 C -0.12 -3.63 6.14 31.32 0.19 -3.43 16 28 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.37 20.44 7.52 -92.70 -0.70 19.75 16 30 H 0.04 1.50 8.04 -2.38 -0.02 1.48 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.29 7.97 -2.39 -0.02 1.27 16 34 H 0.04 1.38 8.02 -2.39 -0.02 1.36 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.42 5.58 7.96 -92.70 -0.74 4.85 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.14 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.10 1.17 7.61 -2.39 -0.02 1.15 16 43 H 0.05 1.74 7.31 -2.38 -0.02 1.72 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -75.89 358.30 0.28 -75.62 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.43 Total: 29.92 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.26 Total: -8.45 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.79 Total: -116.35 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.78 Total: -29.47 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -75.89 0.28 -75.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086701326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.791 kcal (2) G-P(sol) polarization free energy of solvation -75.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds