Wall clock time and date at job start Fri Apr 10 2020 17:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00387 * 2 1 4 4 H 1.48496 * 109.47002 * 270.00596 * 3 2 1 5 5 H 1.48499 * 109.46703 * 30.00513 * 3 2 1 6 6 H 1.48497 * 109.47107 * 150.00273 * 3 2 1 7 7 C 1.38821 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99560 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99954 * 0.02562 * 7 2 1 10 10 S 1.65606 * 119.99948 * 185.51365 * 9 7 2 11 11 O 1.42095 * 106.39982 * 48.86457 * 10 9 7 12 12 O 1.42104 * 106.40008 * 181.78459 * 10 9 7 13 13 C 1.76195 * 107.21431 * 295.32529 * 10 9 7 14 14 C 1.38217 * 119.99891 * 115.82382 * 13 10 9 15 15 C 1.38335 * 119.99900 * 179.71986 * 14 13 10 16 16 Cl 1.73609 * 120.00240 * 180.29656 * 15 14 13 17 17 C 1.38376 * 120.00062 * 0.57464 * 15 14 13 18 18 C 1.38176 * 119.99948 * 359.69673 * 17 15 14 19 19 C 1.38339 * 120.00451 * 296.09495 * 13 10 9 20 20 Cl 1.73604 * 119.99275 * 0.02562 * 19 13 10 21 21 H 0.97007 * 119.99634 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00514 * 5.50199 * 9 7 2 23 23 H 1.07999 * 120.00303 * 359.97438 * 14 13 10 24 24 H 1.08002 * 119.99951 * 179.67877 * 17 15 14 25 25 H 1.07997 * 119.99995 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6525 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 16 2.1476 -3.8191 0.1356 11 8 3.0358 -3.6678 1.2344 12 8 1.1731 -4.8506 0.0602 13 6 3.1557 -3.9810 -1.3004 14 6 4.5326 -3.9915 -1.1805 15 6 5.3240 -4.1245 -2.3074 16 17 7.0534 -4.1455 -2.1561 17 6 4.7374 -4.2350 -3.5557 18 6 3.3609 -4.2189 -3.6762 19 6 2.5693 -4.0920 -2.5484 20 17 0.8399 -4.0710 -2.6996 21 1 -0.4850 0.8401 0.0004 22 1 0.3589 -2.3900 -0.0825 23 1 4.9907 -3.9001 -0.2068 24 1 5.3553 -4.3336 -4.4360 25 1 2.9031 -4.3047 -4.6505 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004603748.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:59 Heat of formation + Delta-G solvation = -79.241580 kcal Electronic energy + Delta-G solvation = -17307.964657 eV Core-core repulsion = 14078.613280 eV Total energy + Delta-G solvation = -3229.351377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 294.962 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48581 -38.22422 -37.83480 -37.33033 -36.75352 -36.46170 -32.83465 -32.60587 -31.66069 -26.42360 -24.68439 -23.99867 -20.51177 -20.04074 -19.25946 -18.31694 -17.44426 -17.26009 -16.43043 -16.31674 -15.98411 -15.36120 -15.20085 -15.06778 -13.85595 -13.70958 -13.60133 -13.17868 -13.09955 -13.04586 -13.00697 -12.88598 -12.57859 -12.33472 -12.16589 -12.12023 -12.04880 -11.84856 -11.55077 -10.62443 -10.15552 -9.82834 -8.28819 -5.86619 -0.60156 -0.34291 -0.17465 0.74087 0.98661 1.48620 1.51081 1.60774 2.02607 2.28003 2.61306 2.82917 3.23175 3.37938 3.67579 3.80296 4.06441 4.10091 4.48727 4.55632 4.74878 4.84747 5.09015 5.31845 5.63644 6.75931 6.96977 7.33874 8.89316 Molecular weight = 294.96amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.007498 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.653196 B = 3733.377005 C = 4416.047775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.313 4.313 8 H 0.104 0.896 9 N -0.963 5.963 10 S 2.662 3.338 11 O -0.989 6.989 12 O -0.992 6.992 13 C -0.665 4.665 14 C -0.020 4.020 15 C -0.058 4.058 16 Cl -0.045 7.045 17 C -0.039 4.039 18 C -0.112 4.112 19 C 0.043 3.957 20 Cl -0.047 7.047 21 H 0.272 0.728 22 H 0.407 0.593 23 H 0.154 0.846 24 H 0.190 0.810 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.686 -6.338 -10.126 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.212 4.212 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.447 4.447 8 H 0.122 0.878 9 N -0.717 5.717 10 S 2.751 3.249 11 O -0.979 6.979 12 O -0.981 6.981 13 C -0.750 4.750 14 C -0.040 4.040 15 C -0.086 4.086 16 Cl -0.016 7.016 17 C -0.057 4.057 18 C -0.131 4.131 19 C 0.014 3.986 20 Cl -0.017 7.017 21 H 0.081 0.919 22 H 0.242 0.758 23 H 0.171 0.829 24 H 0.207 0.793 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.720 -6.890 -9.439 15.200 hybrid contribution -0.162 1.020 -0.396 1.106 sum 9.558 -5.870 -9.836 14.918 Atomic orbital electron populations 1.69797 1.07087 1.28544 1.51196 1.25878 0.96298 1.01900 0.97157 0.85168 0.78404 0.77727 0.78653 1.19518 1.20776 1.18638 1.19380 0.92152 0.83533 1.49602 0.87817 1.51248 1.16485 1.18406 1.85605 1.03138 0.73083 0.72764 0.75872 1.93470 1.67108 1.86825 1.50504 1.93495 1.59838 1.56843 1.87962 1.31245 1.08652 1.16357 1.18729 1.20904 0.90387 0.92480 1.00209 1.21158 0.86020 1.06180 0.95253 1.98381 1.08072 1.96863 1.98287 1.21683 0.94267 0.92810 0.96954 1.21531 0.92952 1.00189 0.98455 1.20798 0.86053 0.97365 0.94346 1.98447 1.09251 1.96095 1.97948 0.91891 0.75781 0.82870 0.79285 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.12 13.07 21.65 0.28 -49.84 15 2 C -0.01 -0.53 5.50 84.86 0.47 -0.06 15 3 Si 0.98 40.57 29.55 68.60 2.03 42.60 15 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 15 7 C -0.31 -15.93 9.63 84.04 0.81 -15.12 15 8 H 0.10 5.03 7.82 -2.92 -0.02 5.01 15 9 N -0.96 -47.03 5.44 -54.27 -0.30 -47.33 15 10 S 2.66 118.03 5.01 -56.49 -0.28 117.75 15 11 O -0.99 -47.54 16.68 -128.00 -2.14 -49.68 15 12 O -0.99 -45.80 16.58 -128.00 -2.12 -47.92 15 13 C -0.66 -24.50 5.82 22.29 0.13 -24.37 15 14 C -0.02 -0.64 9.33 22.29 0.21 -0.43 15 15 C -0.06 -1.49 6.32 22.33 0.14 -1.35 15 16 Cl -0.05 -0.98 28.96 -2.72 -0.08 -1.06 15 17 C -0.04 -0.78 9.83 22.29 0.22 -0.56 15 18 C -0.11 -2.62 9.83 22.29 0.22 -2.40 15 19 C 0.04 1.40 6.30 22.33 0.14 1.54 15 20 Cl -0.05 -1.64 26.46 -2.72 -0.07 -1.71 15 21 H 0.27 13.95 8.31 -92.70 -0.77 13.18 15 22 H 0.41 20.56 8.04 -96.75 -0.78 19.78 15 23 H 0.15 4.96 7.34 -2.91 -0.02 4.93 15 24 H 0.19 2.16 8.06 -2.91 -0.02 2.14 15 25 H 0.18 2.91 8.06 -2.91 -0.02 2.89 15 Total: -1.00 -62.94 273.26 0.14 -62.80 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.48 Total: 17.15 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 2.33 Total: -42.76 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -0.01 Total: -97.17 kcal Atomic # 8 Polarization: -93.34 SS G_CDS: -4.26 Total: -97.60 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 118.03 SS G_CDS: -0.28 Total: 117.75 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -0.15 Total: -2.77 kcal Total: -62.94 0.14 -62.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004603748.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.440 kcal (2) G-P(sol) polarization free energy of solvation -62.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds