Wall clock time and date at job start Fri Apr 10 2020 17:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50699 * 119.99579 * 2 1 4 4 N 1.46495 * 109.47203 * 124.99642 * 3 2 1 5 5 C 1.46874 * 124.34516 * 89.99889 * 4 3 2 6 6 C 1.53971 * 105.40295 * 163.53495 * 5 4 3 7 7 C 1.54191 * 102.27542 * 24.83375 * 6 5 4 8 8 C 1.34464 * 124.34758 * 269.97243 * 4 3 2 9 9 O 1.21286 * 124.94203 * 0.26506 * 8 4 3 10 10 C 1.53425 * 109.73757 * 268.69328 * 6 5 4 11 11 O 1.44048 * 112.37494 * 193.83039 * 10 6 5 12 12 C 1.40639 * 116.40241 * 318.30187 * 11 10 6 13 13 C 1.54099 * 109.12616 * 93.91455 * 12 11 10 14 14 N 1.40429 * 111.99413 * 282.08776 * 13 12 11 15 15 C 1.46902 * 111.00346 * 188.25816 * 14 13 12 16 16 C 1.50706 * 109.46577 * 66.04668 * 15 14 13 17 17 H 1.07995 * 120.00167 * 359.72326 * 16 15 14 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.48050 * 114.19753 * 61.86476 * 14 13 12 25 25 H 1.07995 * 119.99647 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99995 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99995 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47718 * 4.99053 * 3 2 1 29 29 H 1.09009 * 109.46618 * 244.99219 * 3 2 1 30 30 H 1.08994 * 110.26537 * 44.54930 * 5 4 3 31 31 H 1.09009 * 110.33439 * 282.55531 * 5 4 3 32 32 H 1.09006 * 110.50279 * 94.33039 * 7 6 5 33 33 H 1.09001 * 110.50530 * 217.01992 * 7 6 5 34 34 H 1.09005 * 108.89815 * 73.08550 * 10 6 5 35 35 H 1.08998 * 108.89942 * 314.57734 * 10 6 5 36 36 H 1.09000 * 109.52755 * 334.02127 * 12 11 10 37 37 H 1.08996 * 109.53155 * 213.80949 * 12 11 10 38 38 H 1.08995 * 108.97862 * 161.44193 * 13 12 11 39 39 H 1.09003 * 108.91188 * 42.68679 * 13 12 11 40 40 H 1.09000 * 109.47263 * 306.04868 * 15 14 13 41 41 H 1.09001 * 109.47582 * 186.04148 * 15 14 13 42 42 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.61718 * 40.79056 * 24 14 13 44 44 H 1.09002 * 109.62235 * 161.32811 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3321 1.1314 5 6 4.3802 0.8506 1.0759 6 6 5.0714 1.4508 2.3139 7 6 3.8855 1.6811 3.2721 8 6 2.6879 1.8012 2.3539 9 8 1.6095 2.2542 2.6744 10 6 5.7048 2.8002 1.9505 11 8 6.6269 3.2617 2.9563 12 6 6.2299 3.0902 4.2946 13 6 6.8049 1.7628 4.8256 14 7 6.0698 0.6539 4.3759 15 6 6.5109 -0.5769 5.0456 16 6 6.1776 -0.4972 6.5132 17 1 5.6913 0.3819 6.9095 18 6 6.4992 -1.5440 7.3509 19 7 6.2089 -1.4742 8.6317 20 14 7.3486 -3.0607 6.6671 21 1 8.8206 -2.8779 6.7376 22 1 6.9584 -4.2494 7.4669 23 1 6.9418 -3.2604 5.2528 24 6 6.0651 0.4851 2.9051 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1317 0.0894 29 1 2.6214 1.4026 -0.9314 30 1 4.8655 1.2017 0.1653 31 1 4.4051 -0.2383 1.1205 32 1 3.7675 0.8313 3.9446 33 1 4.0258 2.6013 3.8392 34 1 4.9138 3.5405 1.8302 35 1 6.2364 2.6973 1.0046 36 1 5.1417 3.0646 4.3514 37 1 6.6078 3.9172 4.8956 38 1 6.7888 1.7802 5.9153 39 1 7.8367 1.6645 4.4881 40 1 7.5879 -0.6912 4.9233 41 1 6.0020 -1.4335 4.6035 42 1 6.4354 -2.2105 9.2212 43 1 7.0590 0.6948 2.5094 44 1 5.7767 -0.5358 2.6547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:12 Heat of formation + Delta-G solvation = -21.798083 kcal Electronic energy + Delta-G solvation = -25150.198719 eV Core-core repulsion = 21683.360133 eV Total energy + Delta-G solvation = -3466.838586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17187 -38.88832 -36.41861 -36.14124 -35.11240 -32.62698 -32.10733 -29.75897 -28.54298 -27.22679 -26.59771 -25.92460 -24.04428 -22.14937 -20.73143 -20.19240 -19.45431 -19.21386 -17.24782 -16.80525 -16.52529 -15.96209 -15.56584 -15.33817 -15.09451 -14.68990 -14.55755 -14.40958 -13.79141 -13.62950 -13.48452 -13.24779 -12.94326 -12.59623 -12.40427 -12.32581 -11.98519 -11.82585 -11.69465 -11.48900 -11.18568 -11.00233 -10.77752 -10.66871 -10.30512 -10.04734 -9.87589 -9.81182 -9.41043 -9.35715 -9.24352 -8.76895 -8.62829 -7.40438 -6.10538 -4.08702 1.95919 2.72689 3.10784 3.23955 3.32152 3.32374 3.92638 4.17896 4.36634 4.45155 4.48525 4.72420 4.85062 4.90386 4.97688 5.10463 5.17822 5.22458 5.33955 5.40609 5.43114 5.50506 5.55761 5.67727 5.71089 5.76625 5.80119 5.94706 6.02739 6.17634 6.35893 6.38320 6.41890 6.44003 6.57401 6.60036 6.80391 6.90436 7.11159 7.46115 7.56388 7.80605 8.17482 8.26881 8.57211 8.97142 9.50692 11.02327 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.004861 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.978194 B = 5759.117531 C = 6633.716005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.179 4.179 3 C 0.154 3.846 4 N -0.621 5.621 5 C 0.118 3.882 6 C -0.101 4.101 7 C -0.138 4.138 8 C 0.516 3.484 9 O -0.535 6.535 10 C 0.079 3.921 11 O -0.386 6.386 12 C 0.042 3.958 13 C 0.049 3.951 14 N -0.540 5.540 15 C 0.168 3.832 16 C -0.513 4.513 17 H 0.082 0.918 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.074 3.926 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.019 0.981 40 H -0.014 1.014 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.043 0.957 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 5.269 -18.991 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.032 3.968 4 N -0.356 5.356 5 C -0.005 4.005 6 C -0.102 4.102 7 C -0.177 4.177 8 C 0.305 3.695 9 O -0.412 6.412 10 C 0.003 3.997 11 O -0.305 6.305 12 C -0.034 4.034 13 C -0.080 4.080 14 N -0.263 5.263 15 C 0.043 3.957 16 C -0.551 4.551 17 H 0.100 0.900 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.703 3.297 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.054 4.054 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.037 0.963 40 H 0.003 0.997 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.130 5.594 -18.610 19.867 hybrid contribution 1.058 -1.380 -0.431 1.791 sum -3.072 4.214 -19.041 19.742 Atomic orbital electron populations 1.23888 0.95889 1.02062 0.99006 1.23300 0.96388 0.98900 1.01194 1.20426 0.91950 0.95882 0.88537 1.48378 1.12910 1.62857 1.11435 1.22128 0.80779 0.99436 0.98186 1.21745 0.96477 0.96973 0.95028 1.22831 0.90241 1.07135 0.97483 1.21429 0.89569 0.75707 0.82803 1.90691 1.26359 1.46167 1.77941 1.22845 0.92842 0.92741 0.91312 1.87508 1.45642 1.82010 1.15292 1.23083 1.01008 0.97485 0.81855 1.21508 0.94308 0.89930 1.02304 1.59204 1.58232 1.05580 1.03292 1.20168 0.93091 0.86794 0.95648 1.21034 1.39333 1.04866 0.89915 0.90003 1.24889 0.95457 0.98130 0.94709 1.69891 1.47575 1.32563 1.03597 0.86872 0.80172 0.83291 0.79409 1.20350 1.21189 1.19269 1.21710 0.96559 0.97460 0.89640 0.88309 0.88374 0.87193 0.89774 0.89770 0.90343 0.90508 0.85030 0.87253 0.93284 0.89549 0.90667 0.89641 0.88249 0.96342 0.99675 0.95352 0.92602 0.93866 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 14.32 29.01 0.42 -1.23 16 2 C -0.18 -1.78 9.85 -36.03 -0.35 -2.13 16 3 C 0.15 1.51 6.37 -5.20 -0.03 1.47 16 4 N -0.62 -7.33 2.92 -173.96 -0.51 -7.84 16 5 C 0.12 1.17 6.41 -3.33 -0.02 1.15 16 6 C -0.10 -1.24 0.60 -154.33 -0.09 -1.34 16 7 C -0.14 -2.03 4.47 -26.93 -0.12 -2.15 16 8 C 0.52 7.89 7.97 -10.79 -0.09 7.81 16 9 O -0.54 -10.14 17.60 5.55 0.10 -10.04 16 10 C 0.08 0.94 5.64 37.38 0.21 1.15 16 11 O -0.39 -5.62 10.19 -34.30 -0.35 -5.97 16 12 C 0.04 0.63 6.38 37.73 0.24 0.87 16 13 C 0.05 0.89 4.97 -6.60 -0.03 0.85 16 14 N -0.54 -10.00 2.66 -240.93 -0.64 -10.64 16 15 C 0.17 3.77 3.80 -4.97 -0.02 3.75 16 16 C -0.51 -13.77 8.91 -34.44 -0.31 -14.07 16 17 H 0.08 2.39 7.33 -52.49 -0.38 2.00 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 20 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 24 C 0.07 1.09 4.67 -4.36 -0.02 1.07 16 25 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 26 H 0.10 0.92 7.84 -52.49 -0.41 0.51 16 27 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.08 0.90 7.58 -51.93 -0.39 0.50 16 29 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.08 0.58 7.63 -51.93 -0.40 0.19 16 31 H 0.08 0.74 7.42 -51.92 -0.39 0.35 16 32 H 0.13 2.26 7.25 -51.93 -0.38 1.89 16 33 H 0.11 1.65 4.70 -51.93 -0.24 1.41 16 34 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 35 H 0.09 0.85 7.77 -51.93 -0.40 0.44 16 36 H 0.08 1.12 3.96 -51.93 -0.21 0.92 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.10 2.02 6.43 -51.93 -0.33 1.68 16 39 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 16 40 H -0.01 -0.33 7.53 -51.93 -0.39 -0.72 16 41 H 0.03 0.64 6.76 -51.93 -0.35 0.29 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.04 0.63 7.72 -51.92 -0.40 0.23 16 44 H 0.08 1.08 6.85 -51.93 -0.36 0.72 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -31.66 338.85 -7.23 -38.89 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.72 Total: 1.28 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.32 Total: -0.92 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.38 Total: -44.47 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.25 Total: -16.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.66 -7.23 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.091 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds