Wall clock time and date at job start Fri Apr 10 2020 17:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50699 * 119.99579 * 2 1 4 4 N 1.46495 * 109.47203 * 124.99642 * 3 2 1 5 5 C 1.46874 * 124.34516 * 89.99889 * 4 3 2 6 6 C 1.53971 * 105.40295 * 163.53495 * 5 4 3 7 7 C 1.54191 * 102.27542 * 24.83375 * 6 5 4 8 8 C 1.34464 * 124.34758 * 269.97243 * 4 3 2 9 9 O 1.21286 * 124.94203 * 0.26506 * 8 4 3 10 10 C 1.53425 * 109.73757 * 268.69328 * 6 5 4 11 11 O 1.44048 * 112.37494 * 193.83039 * 10 6 5 12 12 C 1.40639 * 116.40241 * 318.30187 * 11 10 6 13 13 C 1.54099 * 109.12616 * 93.91455 * 12 11 10 14 14 N 1.40429 * 111.99413 * 282.08776 * 13 12 11 15 15 C 1.46902 * 111.00346 * 188.25816 * 14 13 12 16 16 C 1.50706 * 109.46577 * 66.04668 * 15 14 13 17 17 H 1.07995 * 120.00167 * 359.72326 * 16 15 14 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.48050 * 114.19753 * 61.86476 * 14 13 12 25 25 H 1.07995 * 119.99647 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99995 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99995 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47718 * 4.99053 * 3 2 1 29 29 H 1.09009 * 109.46618 * 244.99219 * 3 2 1 30 30 H 1.08994 * 110.26537 * 44.54930 * 5 4 3 31 31 H 1.09009 * 110.33439 * 282.55531 * 5 4 3 32 32 H 1.09006 * 110.50279 * 94.33039 * 7 6 5 33 33 H 1.09001 * 110.50530 * 217.01992 * 7 6 5 34 34 H 1.09005 * 108.89815 * 73.08550 * 10 6 5 35 35 H 1.08998 * 108.89942 * 314.57734 * 10 6 5 36 36 H 1.09000 * 109.52755 * 334.02127 * 12 11 10 37 37 H 1.08996 * 109.53155 * 213.80949 * 12 11 10 38 38 H 1.08995 * 108.97862 * 161.44193 * 13 12 11 39 39 H 1.09003 * 108.91188 * 42.68679 * 13 12 11 40 40 H 1.09000 * 109.47263 * 306.04868 * 15 14 13 41 41 H 1.09001 * 109.47582 * 186.04148 * 15 14 13 42 42 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 43 43 H 1.09008 * 109.61718 * 40.79056 * 24 14 13 44 44 H 1.09002 * 109.62235 * 161.32811 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3321 1.1314 5 6 4.3802 0.8506 1.0759 6 6 5.0714 1.4508 2.3139 7 6 3.8855 1.6811 3.2721 8 6 2.6879 1.8012 2.3539 9 8 1.6095 2.2542 2.6744 10 6 5.7048 2.8002 1.9505 11 8 6.6269 3.2617 2.9563 12 6 6.2299 3.0902 4.2946 13 6 6.8049 1.7628 4.8256 14 7 6.0698 0.6539 4.3759 15 6 6.5109 -0.5769 5.0456 16 6 6.1776 -0.4972 6.5132 17 1 5.6913 0.3819 6.9095 18 6 6.4992 -1.5440 7.3509 19 7 6.2089 -1.4742 8.6317 20 14 7.3486 -3.0607 6.6671 21 1 8.8206 -2.8779 6.7376 22 1 6.9584 -4.2494 7.4669 23 1 6.9418 -3.2604 5.2528 24 6 6.0651 0.4851 2.9051 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1317 0.0894 29 1 2.6214 1.4026 -0.9314 30 1 4.8655 1.2017 0.1653 31 1 4.4051 -0.2383 1.1205 32 1 3.7675 0.8313 3.9446 33 1 4.0258 2.6013 3.8392 34 1 4.9138 3.5405 1.8302 35 1 6.2364 2.6973 1.0046 36 1 5.1417 3.0646 4.3514 37 1 6.6078 3.9172 4.8956 38 1 6.7888 1.7802 5.9153 39 1 7.8367 1.6645 4.4881 40 1 7.5879 -0.6912 4.9233 41 1 6.0020 -1.4335 4.6035 42 1 6.4354 -2.2105 9.2212 43 1 7.0590 0.6948 2.5094 44 1 5.7767 -0.5358 2.6547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:11 Heat of formation + Delta-G solvation = -43.475299 kcal Electronic energy + Delta-G solvation = -25151.138714 eV Core-core repulsion = 21683.360133 eV Total energy + Delta-G solvation = -3467.778581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27757 -40.10662 -37.59603 -37.51402 -36.01919 -34.59190 -33.18010 -31.13949 -30.04319 -28.43137 -27.55903 -27.13871 -25.23958 -23.76593 -22.09049 -21.10401 -20.57222 -20.30167 -19.02969 -17.98145 -17.80482 -17.13603 -16.69641 -16.45323 -16.27221 -16.20959 -15.83042 -15.54423 -15.28708 -14.72423 -14.58893 -14.46253 -14.33247 -13.98098 -13.70552 -13.56772 -13.31977 -13.07334 -12.81890 -12.79872 -12.52709 -12.27489 -12.10690 -11.99233 -11.81851 -11.63268 -11.37488 -11.19491 -10.84974 -10.76430 -10.47483 -10.31982 -9.72580 -8.90629 -8.25509 -6.28617 1.18046 1.36781 1.38028 1.48209 1.54597 2.19889 2.36334 2.85642 2.99508 3.09399 3.42536 3.48616 3.64471 3.88964 3.95702 4.12639 4.16476 4.18698 4.25487 4.42063 4.46404 4.58036 4.60101 4.67511 4.70822 4.75130 4.81540 4.84953 4.91491 4.98837 5.02220 5.04591 5.12340 5.22551 5.24156 5.55065 5.58002 5.65002 5.77032 6.00566 6.08550 6.34243 6.56317 6.73437 6.81264 7.13955 7.35239 8.91010 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.004861 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.978194 B = 5759.117531 C = 6633.716005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.186 4.186 3 C 0.150 3.850 4 N -0.609 5.609 5 C 0.121 3.879 6 C -0.091 4.091 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.582 6.582 10 C 0.076 3.924 11 O -0.393 6.393 12 C 0.055 3.945 13 C 0.055 3.945 14 N -0.550 5.550 15 C 0.178 3.822 16 C -0.514 4.514 17 H 0.039 0.961 18 C 0.007 3.993 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.243 1.243 24 C 0.076 3.924 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.013 0.987 40 H -0.013 1.013 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.054 0.946 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 4.455 -22.983 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.205 4.205 3 C 0.029 3.971 4 N -0.342 5.342 5 C -0.001 4.001 6 C -0.093 4.093 7 C -0.175 4.175 8 C 0.300 3.700 9 O -0.462 6.462 10 C 0.000 4.000 11 O -0.312 6.312 12 C -0.022 4.022 13 C -0.075 4.075 14 N -0.273 5.273 15 C 0.052 3.948 16 C -0.553 4.553 17 H 0.057 0.943 18 C -0.190 4.190 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.166 1.166 24 C -0.051 4.051 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.004 0.996 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.995 4.782 -22.674 23.366 hybrid contribution 0.650 -1.049 0.810 1.476 sum -2.345 3.732 -21.865 22.305 Atomic orbital electron populations 1.24048 0.96215 1.02501 0.98826 1.23413 0.96520 0.99255 1.01336 1.20651 0.91996 0.95420 0.89036 1.48421 1.13982 1.61134 1.10641 1.22318 0.79318 1.00116 0.98376 1.21644 0.94995 0.97187 0.95440 1.22687 0.91767 1.05425 0.97667 1.21461 0.88820 0.75698 0.84026 1.90661 1.27982 1.48585 1.79017 1.23091 0.93107 0.92121 0.91683 1.87495 1.46609 1.82114 1.14993 1.22881 1.00677 0.95943 0.82718 1.21409 0.94333 0.91491 1.00270 1.59087 1.58190 1.04107 1.05951 1.19917 0.92993 0.88871 0.93063 1.21310 1.38041 1.03238 0.92675 0.94278 1.25838 0.96426 1.01897 0.94843 1.70062 1.49739 1.33912 1.05375 0.85739 0.79005 0.78515 0.79790 1.19591 1.21265 1.16639 1.21806 0.97835 0.98872 0.86607 0.87362 0.88659 0.86356 0.91019 0.85910 0.86042 0.89257 0.87945 0.88268 0.92911 0.86071 0.90836 0.88470 0.91986 0.96853 0.99582 0.94656 0.92614 0.92758 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 14.32 67.77 0.97 -2.20 16 2 C -0.19 -3.23 9.85 25.64 0.25 -2.98 16 3 C 0.15 2.47 6.37 85.63 0.55 3.01 16 4 N -0.61 -12.57 2.92 -822.84 -2.40 -14.97 16 5 C 0.12 1.83 6.41 86.64 0.56 2.39 16 6 C -0.09 -1.99 0.60 -52.07 -0.03 -2.02 16 7 C -0.14 -3.95 4.47 30.47 0.14 -3.82 16 8 C 0.51 15.25 7.97 87.92 0.70 15.95 16 9 O -0.58 -22.42 17.60 -3.05 -0.05 -22.47 16 10 C 0.08 1.52 5.64 72.12 0.41 1.92 16 11 O -0.39 -10.48 10.19 -145.63 -1.48 -11.97 16 12 C 0.05 1.61 6.38 72.35 0.46 2.07 16 13 C 0.06 2.00 4.97 87.85 0.44 2.44 16 14 N -0.55 -20.21 2.66 -916.15 -2.44 -22.65 16 15 C 0.18 7.90 3.80 85.56 0.32 8.23 16 16 C -0.51 -28.58 8.91 25.60 0.23 -28.35 16 17 H 0.04 2.44 7.33 -2.91 -0.02 2.42 16 18 C 0.01 0.40 5.47 84.66 0.46 0.86 16 19 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 20 Si 0.95 42.74 27.47 68.60 1.88 44.62 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 24 C 0.08 2.02 4.67 85.32 0.40 2.41 16 25 H 0.11 1.67 8.06 -2.91 -0.02 1.65 16 26 H 0.10 1.72 7.84 -2.91 -0.02 1.69 16 27 H 0.12 1.86 8.06 -2.91 -0.02 1.83 16 28 H 0.07 1.40 7.58 -2.39 -0.02 1.38 16 29 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.12 0.94 7.63 -2.39 -0.02 0.92 16 31 H 0.09 1.25 7.42 -2.38 -0.02 1.23 16 32 H 0.10 3.62 7.25 -2.38 -0.02 3.60 16 33 H 0.10 3.06 4.70 -2.39 -0.01 3.05 16 34 H 0.05 1.06 7.90 -2.38 -0.02 1.04 16 35 H 0.12 1.66 7.77 -2.39 -0.02 1.64 16 36 H 0.07 2.22 3.96 -2.39 -0.01 2.21 16 37 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.06 2.69 6.43 -2.39 -0.02 2.67 16 39 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 40 H -0.01 -0.60 7.53 -2.39 -0.02 -0.62 16 41 H 0.04 1.53 6.76 -2.39 -0.02 1.51 16 42 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 43 H 0.05 1.37 7.72 -2.38 -0.02 1.35 16 44 H 0.09 2.14 6.85 -2.39 -0.02 2.13 16 Total: -1.00 -72.79 338.85 2.59 -70.21 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.93 Total: 15.86 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.85 Total: -0.07 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -4.54 Total: -96.18 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.54 Total: -34.44 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Total: -72.79 2.59 -70.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.732 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds