Wall clock time and date at job start Fri Apr 10 2020 17:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99942 * 2 1 4 4 H 1.48500 * 109.47604 * 239.99725 * 3 2 1 5 5 H 1.48499 * 109.47496 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47298 * 119.99862 * 3 2 1 7 7 C 1.37879 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99777 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46693 * 175.03599 * 9 7 2 11 11 C 1.46904 * 110.99701 * 295.07958 * 10 9 7 12 12 C 1.53241 * 109.33546 * 187.25723 * 11 10 9 13 13 N 1.47081 * 108.51982 * 306.16780 * 12 11 10 14 14 C 1.34780 * 120.87953 * 231.18799 * 13 12 11 15 15 O 1.21587 * 119.99519 * 174.75504 * 14 13 12 16 16 N 1.34776 * 119.99999 * 354.47661 * 14 13 12 17 17 C 1.46501 * 119.99776 * 184.96864 * 16 14 13 18 18 H 1.09001 * 115.52045 * 350.42553 * 17 16 14 19 19 C 1.52998 * 117.44669 * 205.00193 * 17 16 14 20 20 H 1.09008 * 119.52133 * 4.09222 * 19 17 16 21 21 C 1.54377 * 118.13288 * 159.13515 * 19 17 16 22 22 N 1.48558 * 104.59762 * 87.22668 * 21 19 17 23 23 C 1.48552 * 104.22101 * 320.52276 * 22 21 19 24 24 C 1.53005 * 117.44324 * 135.77566 * 17 16 14 25 25 H 1.08994 * 119.52266 * 355.90470 * 24 17 16 26 26 C 1.47076 * 118.23803 * 51.46699 * 13 12 11 27 27 C 1.46894 * 111.00299 * 59.38445 * 10 9 7 28 28 H 0.97007 * 120.00223 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47133 * 55.03441 * 9 7 2 30 30 H 1.08998 * 109.47045 * 295.03324 * 9 7 2 31 31 H 1.09002 * 109.49175 * 67.30022 * 11 10 9 32 32 H 1.08991 * 109.51610 * 307.23067 * 11 10 9 33 33 H 1.09002 * 109.62384 * 186.46382 * 12 11 10 34 34 H 1.08994 * 109.79214 * 65.97526 * 12 11 10 35 35 H 0.96998 * 120.00359 * 4.97512 * 16 14 13 36 36 H 1.08995 * 110.40925 * 206.01428 * 21 19 17 37 37 H 1.09007 * 110.40444 * 328.33180 * 21 19 17 38 38 H 1.00899 * 110.99457 * 80.07445 * 22 21 19 39 39 H 1.09002 * 110.41171 * 158.25796 * 23 22 21 40 40 H 1.09004 * 110.41187 * 280.57992 * 23 22 21 41 41 H 1.08999 * 109.63235 * 68.24135 * 26 13 12 42 42 H 1.09001 * 109.62735 * 188.83079 * 26 13 12 43 43 H 1.09004 * 109.49554 * 292.70388 * 27 10 9 44 44 H 1.08994 * 109.49604 * 52.78681 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2011 -3.6131 -0.1210 11 6 2.8892 -3.5800 -1.4185 12 6 3.7313 -4.8503 -1.5787 13 7 4.6145 -4.9758 -0.4093 14 6 5.9391 -5.1730 -0.5610 15 8 6.6681 -5.1793 0.4122 16 7 6.4549 -5.3687 -1.7907 17 6 7.8756 -5.6909 -1.9463 18 1 8.4803 -5.5952 -1.0445 19 6 8.5370 -5.3368 -3.2797 20 1 7.9643 -4.8033 -4.0384 21 6 10.0743 -5.1998 -3.3160 22 7 10.5671 -6.5781 -3.5697 23 6 9.6754 -7.4407 -2.7526 24 6 8.2421 -6.8087 -2.9247 25 1 7.4499 -7.3709 -3.4190 26 6 4.0129 -4.8868 0.9298 27 6 3.1605 -3.6093 0.9913 28 1 -0.4851 0.8401 0.0004 29 1 0.5590 -2.5192 -0.8424 30 1 0.6931 -2.5966 0.9308 31 1 3.5380 -2.7054 -1.4639 32 1 2.1525 -3.5285 -2.2201 33 1 4.3321 -4.7792 -2.4854 34 1 3.0782 -5.7208 -1.6395 35 1 5.8856 -5.2962 -2.5726 36 1 10.3775 -4.5329 -4.1230 37 1 10.4457 -4.8314 -2.3596 38 1 10.4985 -6.8120 -4.5488 39 1 9.6784 -8.4612 -3.1356 40 1 9.9859 -7.4267 -1.7078 41 1 3.3839 -5.7591 1.1074 42 1 4.8001 -4.8400 1.6824 43 1 3.8056 -2.7342 0.9123 44 1 2.6204 -3.5793 1.9375 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353487317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:51 Heat of formation + Delta-G solvation = 28.752141 kcal Electronic energy + Delta-G solvation = -23961.226867 eV Core-core repulsion = 20528.873055 eV Total energy + Delta-G solvation = -3432.353813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59540 -39.56264 -37.58036 -34.78088 -34.44542 -32.42712 -31.64368 -30.43559 -28.57058 -28.04624 -25.41835 -23.80953 -23.09850 -22.39794 -21.52154 -20.68470 -20.37841 -19.28442 -18.01904 -17.23318 -16.38797 -16.13021 -15.39967 -14.97907 -14.94074 -14.56177 -14.42793 -14.11786 -13.89429 -13.83669 -13.57698 -13.14732 -12.91204 -12.47771 -12.24348 -12.05579 -11.87686 -11.79438 -11.19624 -11.18671 -11.05314 -11.02729 -10.71040 -10.67307 -10.31579 -10.26371 -10.05173 -9.91025 -9.68357 -9.21160 -8.97053 -8.49776 -8.34699 -7.30290 -6.09810 -4.19442 2.56537 3.02838 3.24460 3.29709 3.32694 3.52882 3.77075 3.92743 4.32703 4.35244 4.44009 4.60115 4.73417 4.83480 4.84924 5.20297 5.21464 5.21954 5.27435 5.41817 5.45922 5.52524 5.60379 5.63672 5.71265 5.77498 5.86926 5.96765 6.08819 6.18905 6.36206 6.40379 6.55719 6.64733 6.70323 6.91055 7.02644 7.15969 7.43861 7.81075 7.89957 7.98305 8.13532 8.20813 8.63581 8.90253 9.48185 10.95305 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.003273 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.485523 B = 8552.486599 C = 9196.200183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.115 3.885 13 N -0.621 5.621 14 C 0.712 3.288 15 O -0.593 6.593 16 N -0.722 5.722 17 C 0.146 3.854 18 H 0.137 0.863 19 C -0.212 4.212 20 H 0.113 0.887 21 C 0.070 3.930 22 N -0.664 5.664 23 C 0.071 3.929 24 C -0.210 4.210 25 H 0.118 0.882 26 C 0.132 3.868 27 C 0.049 3.951 28 H 0.264 0.736 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.338 0.662 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.239 -13.739 -8.331 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.079 4.079 12 C -0.008 4.008 13 N -0.358 5.358 14 C 0.414 3.586 15 O -0.472 6.472 16 N -0.376 5.376 17 C 0.038 3.962 18 H 0.155 0.845 19 C -0.234 4.234 20 H 0.131 0.869 21 C -0.060 4.060 22 N -0.289 5.289 23 C -0.060 4.060 24 C -0.232 4.232 25 H 0.136 0.864 26 C 0.009 3.991 27 C -0.080 4.080 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.153 0.847 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.931 -14.060 -7.118 21.710 hybrid contribution -0.568 2.002 -1.216 2.410 sum 14.363 -12.059 -8.334 20.523 Atomic orbital electron populations 1.69926 1.06001 1.27059 1.49839 1.24949 0.94765 0.99159 0.94761 0.86706 0.79694 0.83233 0.78698 1.20326 1.21117 1.20178 1.21710 0.93261 0.92126 1.52156 0.92631 1.19763 0.90662 0.85295 0.98011 1.62487 1.16571 1.47003 1.00351 1.22206 0.96847 0.94749 0.94122 1.21851 0.92411 0.99916 0.86636 1.47363 1.04689 1.75230 1.08524 1.15733 0.82184 0.77564 0.83118 1.90883 1.58622 1.59397 1.38252 1.44630 1.09284 1.76149 1.07578 1.21486 0.82159 0.97882 0.94676 0.84519 1.24743 0.98199 0.99396 1.01044 0.86871 1.22574 0.89230 0.91171 1.02989 1.63525 1.50278 1.02668 1.12474 1.23161 0.86580 0.96557 0.99664 1.25575 1.00499 0.90993 1.06147 0.86444 1.21854 0.96226 0.98629 0.82346 1.22365 0.94408 0.95347 0.95928 0.92667 0.94677 0.95146 0.93922 0.90363 0.91576 0.90960 0.76659 0.90136 0.89603 0.84698 0.90348 0.89461 0.91438 0.89305 0.93787 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.55 -14.87 7.76 -34.44 -0.27 -15.13 16 8 H 0.06 1.51 5.88 -52.49 -0.31 1.20 16 9 C 0.19 4.65 5.11 -4.97 -0.03 4.62 16 10 N -0.54 -10.93 4.83 -235.46 -1.14 -12.07 16 11 C 0.05 0.89 5.25 -3.70 -0.02 0.88 16 12 C 0.12 1.59 6.53 -3.60 -0.02 1.56 16 13 N -0.62 -9.71 3.00 -177.91 -0.53 -10.24 16 14 C 0.71 11.46 8.30 -86.92 -0.72 10.74 16 15 O -0.59 -11.51 15.36 5.29 0.08 -11.43 16 16 N -0.72 -8.86 5.47 -58.67 -0.32 -9.18 16 17 C 0.15 1.60 5.93 -67.93 -0.40 1.20 16 18 H 0.14 1.75 7.39 -51.93 -0.38 1.37 16 19 C -0.21 -1.81 6.97 -89.24 -0.62 -2.43 16 20 H 0.11 0.92 8.14 -51.92 -0.42 0.49 16 21 C 0.07 0.55 7.27 -2.18 -0.02 0.54 16 22 N -0.66 -5.08 7.63 -107.74 -0.82 -5.90 16 23 C 0.07 0.54 7.33 -0.40 0.00 0.54 16 24 C -0.21 -1.76 7.33 -87.45 -0.64 -2.40 16 25 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 26 C 0.13 2.16 6.64 -3.36 -0.02 2.14 16 27 C 0.05 0.93 5.17 -3.46 -0.02 0.92 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.86 7.12 -51.93 -0.37 0.49 16 32 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 33 H 0.07 0.72 5.75 -51.93 -0.30 0.42 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 4.03 6.37 -40.82 -0.26 3.77 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.34 2.09 8.92 -39.29 -0.35 1.74 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.48 7.04 -51.93 -0.37 1.12 16 43 H 0.04 0.95 6.61 -51.93 -0.34 0.61 16 44 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -31.15 346.38 -11.55 -42.70 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.88 Total: 4.67 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -2.88 Total: 4.90 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: -2.08 Total: -62.33 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.15 -11.55 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353487317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.456 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds