Wall clock time and date at job start Fri Apr 10 2020 17:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99942 * 2 1 4 4 H 1.48500 * 109.47604 * 239.99725 * 3 2 1 5 5 H 1.48499 * 109.47496 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47298 * 119.99862 * 3 2 1 7 7 C 1.37879 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99777 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46693 * 175.03599 * 9 7 2 11 11 C 1.46904 * 110.99701 * 295.07958 * 10 9 7 12 12 C 1.53241 * 109.33546 * 187.25723 * 11 10 9 13 13 N 1.47081 * 108.51982 * 306.16780 * 12 11 10 14 14 C 1.34780 * 120.87953 * 231.18799 * 13 12 11 15 15 O 1.21587 * 119.99519 * 174.75504 * 14 13 12 16 16 N 1.34776 * 119.99999 * 354.47661 * 14 13 12 17 17 C 1.46501 * 119.99776 * 184.96864 * 16 14 13 18 18 H 1.09001 * 115.52045 * 350.42553 * 17 16 14 19 19 C 1.52998 * 117.44669 * 205.00193 * 17 16 14 20 20 H 1.09008 * 119.52133 * 4.09222 * 19 17 16 21 21 C 1.54377 * 118.13288 * 159.13515 * 19 17 16 22 22 N 1.48558 * 104.59762 * 87.22668 * 21 19 17 23 23 C 1.48552 * 104.22101 * 320.52276 * 22 21 19 24 24 C 1.53005 * 117.44324 * 135.77566 * 17 16 14 25 25 H 1.08994 * 119.52266 * 355.90470 * 24 17 16 26 26 C 1.47076 * 118.23803 * 51.46699 * 13 12 11 27 27 C 1.46894 * 111.00299 * 59.38445 * 10 9 7 28 28 H 0.97007 * 120.00223 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47133 * 55.03441 * 9 7 2 30 30 H 1.08998 * 109.47045 * 295.03324 * 9 7 2 31 31 H 1.09002 * 109.49175 * 67.30022 * 11 10 9 32 32 H 1.08991 * 109.51610 * 307.23067 * 11 10 9 33 33 H 1.09002 * 109.62384 * 186.46382 * 12 11 10 34 34 H 1.08994 * 109.79214 * 65.97526 * 12 11 10 35 35 H 0.96998 * 120.00359 * 4.97512 * 16 14 13 36 36 H 1.08995 * 110.40925 * 206.01428 * 21 19 17 37 37 H 1.09007 * 110.40444 * 328.33180 * 21 19 17 38 38 H 1.00899 * 110.99457 * 80.07445 * 22 21 19 39 39 H 1.09002 * 110.41171 * 158.25796 * 23 22 21 40 40 H 1.09004 * 110.41187 * 280.57992 * 23 22 21 41 41 H 1.08999 * 109.63235 * 68.24135 * 26 13 12 42 42 H 1.09001 * 109.62735 * 188.83079 * 26 13 12 43 43 H 1.09004 * 109.49554 * 292.70388 * 27 10 9 44 44 H 1.08994 * 109.49604 * 52.78681 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2011 -3.6131 -0.1210 11 6 2.8892 -3.5800 -1.4185 12 6 3.7313 -4.8503 -1.5787 13 7 4.6145 -4.9758 -0.4093 14 6 5.9391 -5.1730 -0.5610 15 8 6.6681 -5.1793 0.4122 16 7 6.4549 -5.3687 -1.7907 17 6 7.8756 -5.6909 -1.9463 18 1 8.4803 -5.5952 -1.0445 19 6 8.5370 -5.3368 -3.2797 20 1 7.9643 -4.8033 -4.0384 21 6 10.0743 -5.1998 -3.3160 22 7 10.5671 -6.5781 -3.5697 23 6 9.6754 -7.4407 -2.7526 24 6 8.2421 -6.8087 -2.9247 25 1 7.4499 -7.3709 -3.4190 26 6 4.0129 -4.8868 0.9298 27 6 3.1605 -3.6093 0.9913 28 1 -0.4851 0.8401 0.0004 29 1 0.5590 -2.5192 -0.8424 30 1 0.6931 -2.5966 0.9308 31 1 3.5380 -2.7054 -1.4639 32 1 2.1525 -3.5285 -2.2201 33 1 4.3321 -4.7792 -2.4854 34 1 3.0782 -5.7208 -1.6395 35 1 5.8856 -5.2962 -2.5726 36 1 10.3775 -4.5329 -4.1230 37 1 10.4457 -4.8314 -2.3596 38 1 10.4985 -6.8120 -4.5488 39 1 9.6784 -8.4612 -3.1356 40 1 9.9859 -7.4267 -1.7078 41 1 3.3839 -5.7591 1.1074 42 1 4.8001 -4.8400 1.6824 43 1 3.8056 -2.7342 0.9123 44 1 2.6204 -3.5793 1.9375 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353487317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:51 Heat of formation + Delta-G solvation = 4.574000 kcal Electronic energy + Delta-G solvation = -23962.275310 eV Core-core repulsion = 20528.873055 eV Total energy + Delta-G solvation = -3433.402255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66249 -40.49785 -39.04364 -36.06965 -35.71993 -34.33425 -32.68527 -31.71315 -29.75483 -29.18845 -27.18282 -24.92744 -24.45889 -23.82800 -22.42423 -22.03342 -21.05161 -20.59821 -19.27208 -18.37922 -18.08805 -17.14822 -16.78981 -16.59949 -16.05846 -15.87876 -15.67003 -15.46273 -15.10633 -15.02168 -14.74065 -14.51950 -14.03911 -13.69317 -13.57797 -13.20770 -13.01885 -12.95306 -12.72502 -12.55958 -12.47711 -12.43683 -12.27965 -11.98235 -11.93323 -11.86439 -11.66196 -11.30565 -10.98144 -10.63927 -10.05695 -9.81442 -9.54643 -9.06204 -8.19816 -6.38968 1.33165 1.34558 1.42511 1.46191 1.92313 2.33345 2.68093 2.71188 3.05379 3.27237 3.32195 3.57725 3.75468 3.94545 3.95923 4.06333 4.08165 4.14733 4.19102 4.33960 4.47613 4.56262 4.59841 4.62192 4.73989 4.82763 4.88925 4.93865 5.00451 5.03283 5.14590 5.15809 5.18939 5.30208 5.40138 5.48888 5.58542 5.69822 5.84910 6.00005 6.18550 6.41853 6.43097 6.80472 6.84731 7.32655 7.43494 8.82311 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.003273 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.485523 B = 8552.486599 C = 9196.200183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.049 0.951 9 C 0.201 3.799 10 N -0.534 5.534 11 C 0.049 3.951 12 C 0.126 3.874 13 N -0.626 5.626 14 C 0.708 3.292 15 O -0.632 6.632 16 N -0.706 5.706 17 C 0.115 3.885 18 H 0.111 0.889 19 C -0.197 4.197 20 H 0.125 0.875 21 C 0.069 3.931 22 N -0.668 5.668 23 C 0.070 3.930 24 C -0.190 4.190 25 H 0.132 0.868 26 C 0.144 3.856 27 C 0.055 3.945 28 H 0.266 0.734 29 H 0.016 0.984 30 H 0.006 0.994 31 H 0.015 0.985 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.409 0.591 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.349 0.651 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.013 0.987 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.440 -14.751 -10.346 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.599 4.599 8 H 0.067 0.933 9 C 0.074 3.926 10 N -0.258 5.258 11 C -0.080 4.080 12 C 0.003 3.997 13 N -0.362 5.362 14 C 0.410 3.590 15 O -0.514 6.514 16 N -0.361 5.361 17 C 0.008 3.992 18 H 0.129 0.871 19 C -0.219 4.219 20 H 0.143 0.857 21 C -0.061 4.061 22 N -0.295 5.295 23 C -0.060 4.060 24 C -0.212 4.212 25 H 0.150 0.850 26 C 0.020 3.980 27 C -0.075 4.075 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.033 0.967 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.166 0.834 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.031 0.969 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.150 -15.094 -9.190 23.940 hybrid contribution -0.897 2.288 -0.595 2.528 sum 15.253 -12.807 -9.785 22.190 Atomic orbital electron populations 1.70029 1.07327 1.27997 1.50757 1.25722 0.95569 1.02516 0.94494 0.85718 0.78529 0.79348 0.78753 1.19617 1.20351 1.20054 1.21927 0.93045 0.93261 1.51648 0.93299 1.19428 0.91058 0.86239 0.95825 1.62425 1.16824 1.44515 1.02020 1.22292 0.96849 0.96082 0.92766 1.21893 0.92345 0.98227 0.87220 1.47397 1.04935 1.75202 1.08661 1.15901 0.81931 0.77446 0.83771 1.90856 1.59494 1.61152 1.39895 1.44454 1.09969 1.75108 1.06583 1.21522 0.81263 1.01411 0.95053 0.87147 1.24783 0.98443 0.99613 0.99032 0.85680 1.22593 0.88794 0.91728 1.02980 1.63473 1.50234 1.02419 1.13330 1.23186 0.86066 0.97538 0.99249 1.25610 1.00891 0.90919 1.03738 0.85023 1.21667 0.95734 0.97497 0.83092 1.22322 0.93837 0.95863 0.95470 0.92467 0.96630 0.97543 0.96657 0.89831 0.88077 0.88795 0.75201 0.88544 0.90965 0.83421 0.88498 0.90733 0.89405 0.89856 0.96865 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.91 13.29 21.45 0.28 -53.63 16 2 C 0.02 0.95 5.46 84.66 0.46 1.41 16 3 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.56 -30.70 7.76 25.60 0.20 -30.50 16 8 H 0.05 2.71 5.88 -2.91 -0.02 2.69 16 9 C 0.20 10.22 5.11 85.56 0.44 10.66 16 10 N -0.53 -21.75 4.83 -898.87 -4.34 -26.09 16 11 C 0.05 1.72 5.25 86.38 0.45 2.17 16 12 C 0.13 3.14 6.53 86.35 0.56 3.70 16 13 N -0.63 -18.69 3.00 -835.03 -2.51 -21.20 16 14 C 0.71 22.12 8.30 179.05 1.49 23.60 16 15 O -0.63 -24.75 15.36 -3.99 -0.06 -24.81 16 16 N -0.71 -16.04 5.47 -457.80 -2.51 -18.54 16 17 C 0.11 2.38 5.93 44.99 0.27 2.65 16 18 H 0.11 2.90 7.39 -2.39 -0.02 2.89 16 19 C -0.20 -2.90 6.97 -9.90 -0.07 -2.97 16 20 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 21 C 0.07 0.96 7.27 86.45 0.63 1.59 16 22 N -0.67 -8.72 7.63 -494.79 -3.77 -12.50 16 23 C 0.07 0.92 7.33 87.61 0.64 1.56 16 24 C -0.19 -2.70 7.33 -8.74 -0.06 -2.76 16 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 26 C 0.14 4.59 6.64 86.51 0.57 5.17 16 27 C 0.05 2.11 5.17 86.54 0.45 2.56 16 28 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 29 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.02 0.61 7.12 -2.39 -0.02 0.60 16 32 H 0.08 2.81 8.05 -2.39 -0.02 2.79 16 33 H 0.10 1.83 5.75 -2.39 -0.01 1.81 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 7.03 6.37 -92.71 -0.59 6.44 16 36 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.35 3.29 8.92 -89.69 -0.80 2.49 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.08 2.79 7.04 -2.39 -0.02 2.78 16 43 H 0.01 0.59 6.61 -2.38 -0.02 0.57 16 44 H 0.08 2.94 8.11 -2.39 -0.02 2.92 16 Total: -1.00 -68.82 346.38 -5.22 -74.04 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.37 Total: 17.94 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 6.03 Total: 18.84 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -12.84 Total: -131.95 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.82 -5.22 -74.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353487317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.613 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds