Wall clock time and date at job start Fri Apr 10 2020 17:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47268 * 2 1 4 4 C 1.52994 * 109.47180 * 239.99829 * 2 1 3 5 5 N 1.46507 * 109.47576 * 184.99900 * 4 2 1 6 6 C 1.36930 * 120.00287 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99929 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00021 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46837 * 59.99987 * 10 8 6 12 12 H 1.48495 * 109.47039 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46836 * 300.00223 * 10 8 6 14 14 N 1.46504 * 109.46930 * 120.00231 * 2 1 3 15 15 C 1.34777 * 119.99854 * 274.99613 * 14 2 1 16 16 O 1.21633 * 119.99979 * 0.02562 * 15 14 2 17 17 C 1.47161 * 119.99978 * 180.27750 * 15 14 2 18 18 C 1.38411 * 126.88392 * 179.43971 * 17 15 14 19 19 C 1.39672 * 105.35742 * 179.86156 * 18 17 15 20 20 C 1.50704 * 126.06905 * 180.12610 * 19 18 17 21 21 C 1.53001 * 109.46874 * 75.30526 * 20 19 18 22 22 C 1.52998 * 109.47129 * 195.30762 * 20 19 18 23 23 C 1.53003 * 109.46873 * 315.30825 * 20 19 18 24 24 N 1.30867 * 107.86483 * 0.40901 * 19 18 17 25 25 N 1.28449 * 110.92516 * 359.73457 * 24 19 18 26 26 H 0.96998 * 125.19034 * 179.97438 * 25 24 19 27 27 H 1.09000 * 109.47470 * 299.99763 * 1 2 3 28 28 H 1.08998 * 109.47338 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47576 * 305.00482 * 4 2 1 31 31 H 1.09004 * 109.47468 * 65.00290 * 4 2 1 32 32 H 0.97005 * 119.99295 * 359.97438 * 5 4 2 33 33 H 0.96998 * 119.99875 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00410 * 95.00338 * 14 2 1 35 35 H 1.07997 * 127.32087 * 359.97438 * 18 17 15 36 36 H 1.09002 * 109.47178 * 60.00357 * 21 20 19 37 37 H 1.09000 * 109.47095 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47509 * 300.00017 * 21 20 19 39 39 H 1.08995 * 109.47392 * 60.00104 * 22 20 19 40 40 H 1.09000 * 109.46776 * 180.02562 * 22 20 19 41 41 H 1.09002 * 109.47189 * 299.99806 * 22 20 19 42 42 H 1.08997 * 109.47283 * 60.00122 * 23 20 19 43 43 H 1.08999 * 109.46636 * 180.02562 * 23 20 19 44 44 H 1.08995 * 109.47146 * 299.99588 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1838 -1.4389 -2.2067 7 1 3.6467 -1.8441 -3.0515 8 6 5.5672 -1.5380 -2.1513 9 7 6.2218 -1.0437 -1.1220 10 14 6.5001 -2.3729 -3.5379 11 1 6.2426 -1.6535 -4.8111 12 1 7.9547 -2.3488 -3.2405 13 1 6.0442 -3.7806 -3.6637 14 7 2.0183 -0.6907 1.1962 15 6 2.1470 -0.0183 2.3571 16 8 1.8574 1.1617 2.4119 17 6 2.6433 -0.7106 3.5572 18 6 2.8402 -0.1604 4.8119 19 6 3.3138 -1.2079 5.6050 20 6 3.6785 -1.1209 7.0647 21 6 2.4022 -1.0664 7.9068 22 6 4.4981 -2.3510 7.4598 23 6 4.5053 0.1430 7.3093 24 7 3.3906 -2.2770 4.8541 25 7 3.0075 -2.0235 3.6546 26 1 2.9813 -2.6663 2.9286 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -1.7198 -1.2952 31 1 1.7517 -0.1583 -2.1370 32 1 3.9824 -0.4621 -0.4319 33 1 7.1886 -1.1127 -1.0835 34 1 2.2490 -1.6318 1.1526 35 1 2.6632 0.8613 5.1139 36 1 1.8131 -1.9669 7.7325 37 1 2.6659 -1.0031 8.9625 38 1 1.8183 -0.1902 7.6253 39 1 5.4073 -2.3898 6.8599 40 1 4.7614 -2.2882 8.5157 41 1 3.9091 -3.2514 7.2855 42 1 3.9213 1.0193 7.0279 43 1 4.7693 0.2056 8.3650 44 1 5.4145 0.1042 6.7095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699368704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:18 Heat of formation + Delta-G solvation = 27.727057 kcal Electronic energy + Delta-G solvation = -23785.592541 eV Core-core repulsion = 20353.194277 eV Total energy + Delta-G solvation = -3432.398264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.54130 -39.38909 -37.00105 -36.26393 -33.76312 -31.85551 -30.97685 -30.54652 -29.66712 -27.34634 -27.32247 -25.78048 -23.75641 -22.81104 -22.47973 -20.79237 -20.38754 -19.03421 -18.41610 -17.17575 -16.03950 -15.76093 -15.69912 -15.05789 -14.76235 -14.48206 -14.15509 -13.90827 -13.73272 -13.68768 -13.42604 -13.29733 -12.47489 -12.39473 -12.30527 -12.23583 -12.20843 -11.73398 -11.71650 -11.39233 -11.15701 -11.08724 -10.98318 -10.87458 -10.58497 -10.52370 -10.15081 -9.90124 -9.81659 -9.14640 -9.08251 -8.99010 -8.82026 -7.05083 -5.85094 -3.16000 1.36860 2.59178 2.85202 3.20850 3.38099 3.41332 3.43020 3.44246 4.34328 4.50588 4.65466 4.81803 4.91900 5.09175 5.17789 5.26920 5.37957 5.46024 5.51745 5.53308 5.56090 5.59814 5.69151 5.70940 5.81307 5.84661 5.91027 5.97794 6.00263 6.05913 6.09795 6.23316 6.27983 6.30442 6.34513 6.50933 6.58226 6.77429 6.99220 7.60535 7.62207 8.04055 8.28503 8.32305 9.44050 9.98672 10.33903 11.36817 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003817 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.810388 B = 7333.200408 C = 8622.526603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.091 0.909 4 C 0.143 3.857 5 N -0.732 5.732 6 C -0.247 4.247 7 H 0.071 0.929 8 C -0.010 4.010 9 N -0.930 5.930 10 Si 0.908 3.092 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.707 5.707 15 C 0.591 3.409 16 O -0.529 6.529 17 C -0.028 4.028 18 C -0.153 4.153 19 C 0.034 3.966 20 C 0.018 3.982 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.140 4.140 24 N -0.265 5.265 25 N -0.374 5.374 26 H 0.446 0.554 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.025 0.975 31 H 0.036 0.964 32 H 0.385 0.615 33 H 0.257 0.743 34 H 0.399 0.601 35 H 0.161 0.839 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 -1.055 15.800 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 H 0.109 0.891 4 C 0.015 3.985 5 N -0.378 5.378 6 C -0.378 4.378 7 H 0.089 0.911 8 C -0.206 4.206 9 N -0.578 5.578 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 N -0.357 5.357 15 C 0.376 3.624 16 O -0.404 6.404 17 C -0.157 4.157 18 C -0.182 4.182 19 C -0.124 4.124 20 C 0.016 3.984 21 C -0.195 4.195 22 C -0.193 4.193 23 C -0.198 4.198 24 N -0.098 5.098 25 N -0.090 5.090 26 H 0.291 0.709 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.233 0.767 35 H 0.178 0.822 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.141 -1.371 15.651 18.176 hybrid contribution 0.702 -0.341 -1.197 1.429 sum -8.439 -1.713 14.453 16.824 Atomic orbital electron populations 1.22109 0.95185 1.01982 1.02412 1.21324 0.93536 0.98135 0.84025 0.89102 1.21003 0.86914 0.97005 0.93542 1.42362 0.99679 1.70357 1.25365 1.19164 0.89436 1.29874 0.99358 0.91130 1.24764 0.96436 1.01376 0.98063 1.69656 1.07418 1.50486 1.30245 0.86257 0.79006 0.79209 0.81616 1.21181 1.21647 1.21238 1.45894 1.66409 1.14048 1.09382 1.16970 0.77722 0.86186 0.81564 1.90810 1.50607 1.14546 1.84412 1.21808 1.10158 0.86286 0.97421 1.21918 1.04828 1.00758 0.90690 1.21854 1.04292 0.89594 0.96639 1.18881 0.95914 0.96867 0.86719 1.21864 0.96335 1.02256 0.99013 1.21771 0.99993 0.96905 1.00604 1.21889 0.99963 0.96311 1.01625 1.73057 1.18319 1.27037 0.91434 1.43636 1.47081 1.08876 1.09424 0.70896 0.92274 0.91366 0.92539 0.95742 0.94586 0.78047 0.93343 0.76730 0.82180 0.92556 0.92045 0.92246 0.92353 0.92577 0.92062 0.92066 0.92010 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 37.16 0.35 -1.70 16 2 C 0.13 2.16 2.73 -67.93 -0.19 1.98 16 3 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 4 C 0.14 2.67 5.82 -4.04 -0.02 2.65 16 5 N -0.73 -17.65 5.43 -59.91 -0.33 -17.98 16 6 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 9 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 10 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 N -0.71 -10.95 4.51 -54.97 -0.25 -11.20 16 15 C 0.59 9.85 7.77 -12.64 -0.10 9.76 16 16 O -0.53 -10.24 16.58 5.25 0.09 -10.15 16 17 C -0.03 -0.42 7.16 -82.06 -0.59 -1.01 16 18 C -0.15 -2.17 10.12 -38.98 -0.39 -2.56 16 19 C 0.03 0.45 5.65 -82.47 -0.47 -0.01 16 20 C 0.02 0.19 0.97 -155.66 -0.15 0.04 16 21 C -0.14 -1.19 8.46 37.16 0.31 -0.88 16 22 C -0.14 -1.34 8.04 37.16 0.30 -1.04 16 23 C -0.14 -1.30 8.20 37.16 0.30 -1.00 16 24 N -0.27 -3.74 11.48 33.64 0.39 -3.36 16 25 N -0.37 -5.07 6.85 33.48 0.23 -4.84 16 26 H 0.45 5.06 8.22 -190.45 -1.57 3.49 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.39 9.99 7.33 -40.82 -0.30 9.69 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.40 5.66 7.79 -40.82 -0.32 5.34 16 35 H 0.16 2.09 7.78 -52.49 -0.41 1.68 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 42 H 0.06 0.55 7.59 -51.93 -0.39 0.16 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -32.22 366.88 -7.94 -40.16 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -8.42 Total: 12.82 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.88 Total: -0.99 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.77 Total: -64.31 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.22 -7.94 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699368704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.891 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds