Wall clock time and date at job start Fri Apr 10 2020 17:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47268 * 2 1 4 4 C 1.52994 * 109.47180 * 239.99829 * 2 1 3 5 5 N 1.46507 * 109.47576 * 184.99900 * 4 2 1 6 6 C 1.36930 * 120.00287 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99929 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00021 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46837 * 59.99987 * 10 8 6 12 12 H 1.48495 * 109.47039 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46836 * 300.00223 * 10 8 6 14 14 N 1.46504 * 109.46930 * 120.00231 * 2 1 3 15 15 C 1.34777 * 119.99854 * 274.99613 * 14 2 1 16 16 O 1.21633 * 119.99979 * 0.02562 * 15 14 2 17 17 C 1.47161 * 119.99978 * 180.27750 * 15 14 2 18 18 C 1.38411 * 126.88392 * 179.43971 * 17 15 14 19 19 C 1.39672 * 105.35742 * 179.86156 * 18 17 15 20 20 C 1.50704 * 126.06905 * 180.12610 * 19 18 17 21 21 C 1.53001 * 109.46874 * 75.30526 * 20 19 18 22 22 C 1.52998 * 109.47129 * 195.30762 * 20 19 18 23 23 C 1.53003 * 109.46873 * 315.30825 * 20 19 18 24 24 N 1.30867 * 107.86483 * 0.40901 * 19 18 17 25 25 N 1.28449 * 110.92516 * 359.73457 * 24 19 18 26 26 H 0.96998 * 125.19034 * 179.97438 * 25 24 19 27 27 H 1.09000 * 109.47470 * 299.99763 * 1 2 3 28 28 H 1.08998 * 109.47338 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47576 * 305.00482 * 4 2 1 31 31 H 1.09004 * 109.47468 * 65.00290 * 4 2 1 32 32 H 0.97005 * 119.99295 * 359.97438 * 5 4 2 33 33 H 0.96998 * 119.99875 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00410 * 95.00338 * 14 2 1 35 35 H 1.07997 * 127.32087 * 359.97438 * 18 17 15 36 36 H 1.09002 * 109.47178 * 60.00357 * 21 20 19 37 37 H 1.09000 * 109.47095 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47509 * 300.00017 * 21 20 19 39 39 H 1.08995 * 109.47392 * 60.00104 * 22 20 19 40 40 H 1.09000 * 109.46776 * 180.02562 * 22 20 19 41 41 H 1.09002 * 109.47189 * 299.99806 * 22 20 19 42 42 H 1.08997 * 109.47283 * 60.00122 * 23 20 19 43 43 H 1.08999 * 109.46636 * 180.02562 * 23 20 19 44 44 H 1.08995 * 109.47146 * 299.99588 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1838 -1.4389 -2.2067 7 1 3.6467 -1.8441 -3.0515 8 6 5.5672 -1.5380 -2.1513 9 7 6.2218 -1.0437 -1.1220 10 14 6.5001 -2.3729 -3.5379 11 1 6.2426 -1.6535 -4.8111 12 1 7.9547 -2.3488 -3.2405 13 1 6.0442 -3.7806 -3.6637 14 7 2.0183 -0.6907 1.1962 15 6 2.1470 -0.0183 2.3571 16 8 1.8574 1.1617 2.4119 17 6 2.6433 -0.7106 3.5572 18 6 2.8402 -0.1604 4.8119 19 6 3.3138 -1.2079 5.6050 20 6 3.6785 -1.1209 7.0647 21 6 2.4022 -1.0664 7.9068 22 6 4.4981 -2.3510 7.4598 23 6 4.5053 0.1430 7.3093 24 7 3.3906 -2.2770 4.8541 25 7 3.0075 -2.0235 3.6546 26 1 2.9813 -2.6663 2.9286 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -1.7198 -1.2952 31 1 1.7517 -0.1583 -2.1370 32 1 3.9824 -0.4621 -0.4319 33 1 7.1886 -1.1127 -1.0835 34 1 2.2490 -1.6318 1.1526 35 1 2.6632 0.8613 5.1139 36 1 1.8131 -1.9669 7.7325 37 1 2.6659 -1.0031 8.9625 38 1 1.8183 -0.1902 7.6253 39 1 5.4073 -2.3898 6.8599 40 1 4.7614 -2.2882 8.5157 41 1 3.9091 -3.2514 7.2855 42 1 3.9213 1.0193 7.0279 43 1 4.7693 0.2056 8.3650 44 1 5.4145 0.1042 6.7095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699368704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:18 Heat of formation + Delta-G solvation = 5.651472 kcal Electronic energy + Delta-G solvation = -23786.549810 eV Core-core repulsion = 20353.194277 eV Total energy + Delta-G solvation = -3433.355533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.64211 -40.72848 -37.84189 -37.76483 -35.54592 -33.36737 -32.18500 -32.01998 -30.92981 -28.11574 -28.04178 -27.45535 -25.10100 -24.34137 -23.66733 -22.05840 -21.65800 -20.27410 -19.40335 -19.11349 -17.41307 -17.01458 -16.87111 -16.58235 -16.00581 -15.72852 -15.38218 -15.20306 -15.18911 -14.80844 -14.67457 -14.44297 -13.99860 -13.67606 -13.57808 -13.11967 -13.06597 -12.94891 -12.77235 -12.69996 -12.49086 -12.32026 -12.23017 -12.00341 -11.93148 -11.87226 -11.74777 -11.48931 -11.23839 -10.97522 -10.38986 -10.14297 -10.05487 -9.04981 -7.97316 -5.27331 0.16386 1.46817 1.48948 1.52188 1.55230 1.76171 1.96273 2.14608 2.53831 3.36270 3.38274 3.58434 3.79557 3.82796 3.99351 4.14530 4.22903 4.26223 4.36360 4.45277 4.49169 4.68114 4.74798 4.82694 4.86424 4.87738 4.91464 4.97152 5.06743 5.08935 5.09739 5.16998 5.27574 5.27999 5.41866 5.48797 5.49769 5.50689 5.51390 5.93820 6.22684 6.35636 6.91807 7.01261 7.30553 8.03617 8.26786 9.25175 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.003817 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.810388 B = 7333.200408 C = 8622.526603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.140 3.860 3 H 0.066 0.934 4 C 0.144 3.856 5 N -0.745 5.745 6 C -0.246 4.246 7 H 0.081 0.919 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.300 1.300 13 H -0.275 1.275 14 N -0.700 5.700 15 C 0.592 3.408 16 O -0.561 6.561 17 C -0.044 4.044 18 C -0.158 4.158 19 C 0.035 3.965 20 C 0.015 3.985 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.139 4.139 24 N -0.276 5.276 25 N -0.369 5.369 26 H 0.453 0.547 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.373 0.627 33 H 0.249 0.751 34 H 0.405 0.595 35 H 0.168 0.832 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 -1.834 16.204 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.036 3.964 3 H 0.084 0.916 4 C 0.018 3.982 5 N -0.388 5.388 6 C -0.377 4.377 7 H 0.099 0.901 8 C -0.265 4.265 9 N -0.619 5.619 10 Si 0.801 3.199 11 H -0.206 1.206 12 H -0.226 1.226 13 H -0.201 1.201 14 N -0.351 5.351 15 C 0.378 3.622 16 O -0.439 6.439 17 C -0.173 4.173 18 C -0.188 4.188 19 C -0.123 4.123 20 C 0.013 3.987 21 C -0.190 4.190 22 C -0.190 4.190 23 C -0.196 4.196 24 N -0.109 5.109 25 N -0.086 5.086 26 H 0.300 0.700 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.241 0.759 35 H 0.185 0.815 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.195 -2.188 16.021 19.115 hybrid contribution 0.951 -0.090 -1.314 1.625 sum -9.244 -2.279 14.706 17.519 Atomic orbital electron populations 1.22021 0.92218 1.03328 1.03001 1.21218 0.95644 0.96366 0.83200 0.91606 1.21169 0.83958 0.98217 0.94900 1.42546 1.01881 1.70011 1.24368 1.19602 0.89842 1.28484 0.99794 0.90146 1.25545 0.97556 1.02944 1.00408 1.69823 1.07015 1.52700 1.32349 0.85232 0.77003 0.78669 0.78952 1.20556 1.22640 1.20081 1.45838 1.65980 1.14273 1.08988 1.17130 0.77200 0.85828 0.82082 1.90784 1.52216 1.15861 1.84992 1.21685 1.11335 0.87046 0.97201 1.22160 1.04574 1.01416 0.90613 1.22387 1.03224 0.88795 0.97933 1.19079 0.97004 0.97557 0.85092 1.21840 0.95270 1.01947 0.99981 1.21750 0.99026 0.96359 1.01817 1.21894 0.99084 0.95776 1.02889 1.73064 1.18613 1.27595 0.91653 1.43644 1.46790 1.08520 1.09637 0.70049 0.92747 0.89728 0.90772 0.93861 0.93977 0.79501 0.94178 0.75942 0.81467 0.93174 0.89773 0.92251 0.93889 0.90200 0.92766 0.91955 0.89654 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 2 C 0.14 4.42 2.73 44.99 0.12 4.55 16 3 H 0.07 2.44 7.58 -2.39 -0.02 2.42 16 4 C 0.14 5.17 5.82 86.38 0.50 5.68 16 5 N -0.74 -35.68 5.43 -343.45 -1.87 -37.54 16 6 C -0.25 -13.08 9.99 84.03 0.84 -12.24 16 7 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 9 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 10 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 N -0.70 -21.59 4.51 -446.07 -2.01 -23.60 16 15 C 0.59 19.97 7.77 86.59 0.67 20.65 16 16 O -0.56 -22.14 16.58 -4.14 -0.07 -22.21 16 17 C -0.04 -1.33 7.16 40.79 0.29 -1.04 16 18 C -0.16 -4.49 10.12 22.66 0.23 -4.26 16 19 C 0.03 0.90 5.65 43.05 0.24 1.14 16 20 C 0.01 0.28 0.97 -52.93 -0.05 0.23 16 21 C -0.13 -2.05 8.46 71.98 0.61 -1.44 16 22 C -0.13 -2.44 8.04 71.98 0.58 -1.86 16 23 C -0.14 -2.38 8.20 71.98 0.59 -1.79 16 24 N -0.28 -7.73 11.48 -47.49 -0.54 -8.28 16 25 N -0.37 -10.01 6.85 -47.99 -0.33 -10.34 16 26 H 0.45 10.29 8.22 -220.00 -1.81 8.48 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.37 19.60 7.33 -92.70 -0.68 18.92 16 33 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.41 11.36 7.79 -92.71 -0.72 10.63 16 35 H 0.17 4.37 7.78 -2.91 -0.02 4.35 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.06 8.08 -2.39 -0.02 1.05 16 42 H 0.06 1.05 7.59 -2.39 -0.02 1.03 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.76 366.88 1.07 -67.69 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -2.19 Total: 42.18 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.78 Total: 3.19 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -4.47 Total: -137.96 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.07 Total: -22.21 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.76 1.07 -67.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699368704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.341 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds