Wall clock time and date at job start Fri Apr 10 2020 17:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50696 * 109.47117 * 120.00104 * 2 1 3 5 5 N 1.30498 * 125.65039 * 300.02236 * 4 2 1 6 6 C 1.34129 * 109.25671 * 179.73373 * 5 4 2 7 7 C 1.34666 * 108.02165 * 0.40230 * 6 5 4 8 8 N 1.35047 * 125.65399 * 119.99774 * 4 2 1 9 9 C 1.46507 * 126.39328 * 0.02641 * 8 4 2 10 10 C 1.50694 * 109.47371 * 85.01751 * 9 8 4 11 11 O 1.21287 * 120.00054 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00517 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47593 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46684 * 64.99926 * 14 13 12 16 16 C 1.52996 * 109.47273 * 184.99697 * 14 13 12 17 17 N 1.46495 * 109.47171 * 305.00425 * 14 13 12 18 18 C 1.36939 * 120.00414 * 154.99935 * 17 14 13 19 19 H 1.08003 * 119.99548 * 359.97438 * 18 17 14 20 20 C 1.38809 * 120.00454 * 179.97438 * 18 17 14 21 21 N 1.31618 * 119.99835 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00151 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46939 * 59.99980 * 22 20 18 24 24 H 1.48507 * 109.47078 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46882 * 299.99894 * 22 20 18 26 26 H 1.09000 * 109.47450 * 59.99883 * 1 2 3 27 27 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47224 * 299.99697 * 1 2 3 29 29 H 1.09000 * 109.46769 * 240.00023 * 2 1 3 30 30 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47289 * 299.99328 * 3 2 1 32 32 H 1.09000 * 109.47415 * 60.00418 * 3 2 1 33 33 H 1.08003 * 125.99108 * 180.25065 * 6 5 4 34 34 H 1.08002 * 126.59556 * 179.87817 * 7 6 5 35 35 H 1.09000 * 109.46583 * 205.02344 * 9 8 4 36 36 H 1.09008 * 109.46472 * 325.01713 * 9 8 4 37 37 H 0.97009 * 119.99750 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47056 * 300.00313 * 13 12 10 39 39 H 1.09001 * 109.46877 * 59.99590 * 13 12 10 40 40 H 1.09004 * 109.47079 * 60.00471 * 16 14 13 41 41 H 1.09001 * 109.47044 * 180.02562 * 16 14 13 42 42 H 1.08994 * 109.47141 * 300.00201 * 16 14 13 43 43 H 0.97000 * 120.00098 * 334.98968 * 17 14 13 44 44 H 0.97000 * 120.00122 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7856 -0.3623 2.4637 6 6 2.3883 -1.2246 3.2957 7 6 3.0403 -2.1367 2.5498 8 7 2.8120 -1.8131 1.2396 9 6 3.3189 -2.5290 0.0662 10 6 4.5913 -1.8767 -0.4094 11 8 5.0318 -0.9092 0.1745 12 7 5.2405 -2.3690 -1.4831 13 6 6.4778 -1.7352 -1.9452 14 6 7.0077 -2.4836 -3.1699 15 1 6.3031 -2.3758 -3.9945 16 6 8.3624 -1.9007 -3.5771 17 7 7.1648 -3.9033 -2.8444 18 6 7.1222 -4.8428 -3.8397 19 1 6.9724 -4.5372 -4.8647 20 6 7.2716 -6.1880 -3.5314 21 7 7.4547 -6.5604 -2.2823 22 14 7.2127 -7.4696 -4.8891 23 1 8.2969 -7.2034 -5.8683 24 1 7.3972 -8.8213 -4.3022 25 1 5.8979 -7.4029 -5.5760 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 2.3582 -1.1916 4.3748 34 1 3.6267 -2.9668 2.9151 35 1 3.5200 -3.5667 0.3326 36 1 2.5742 -2.4959 -0.7292 37 1 4.8883 -3.1430 -1.9499 38 1 6.2769 -0.6976 -2.2118 39 1 7.2220 -1.7682 -1.1495 40 1 9.0670 -2.0085 -2.7524 41 1 8.7397 -2.4336 -4.4499 42 1 8.2454 -0.8445 -3.8193 43 1 7.2992 -4.1778 -1.9238 44 1 7.5595 -7.5003 -2.0668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752906454.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:20 Heat of formation + Delta-G solvation = 4.737149 kcal Electronic energy + Delta-G solvation = -23899.937921 eV Core-core repulsion = 20466.542741 eV Total energy + Delta-G solvation = -3433.395181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.15488 -40.66688 -37.96128 -36.27105 -35.24033 -34.98158 -33.63103 -30.67519 -29.87458 -29.13933 -28.03405 -26.71559 -25.56263 -23.80160 -22.40042 -21.77119 -21.62685 -20.07516 -19.35967 -18.41829 -18.27176 -16.99773 -16.90120 -16.37862 -16.01341 -15.89174 -15.48786 -15.23922 -15.12192 -14.57783 -14.57377 -14.29809 -13.95493 -13.79588 -13.70353 -13.63624 -13.16849 -13.06682 -12.99608 -12.73913 -12.50485 -12.40105 -12.22642 -12.12302 -11.89092 -11.71951 -11.66153 -11.43772 -10.96350 -10.93915 -10.46275 -10.10196 -9.27898 -9.02248 -7.91146 -5.20000 1.00245 1.46337 1.51853 1.53423 1.58779 1.67902 2.20347 2.32160 2.58736 3.41325 3.43258 3.63160 3.70848 3.77715 3.89399 3.98265 4.06302 4.13707 4.21134 4.35771 4.38320 4.59471 4.62992 4.71967 4.73539 4.80921 4.83699 4.90634 4.95770 5.05693 5.06006 5.25111 5.28144 5.33652 5.36062 5.42534 5.56160 5.57906 5.85263 6.17355 6.29433 6.50154 7.11756 7.16048 7.37624 8.09165 8.33775 9.31092 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.019065 B = 0.003434 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.315884 B = 8152.793663 C = 8574.843493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.011 4.011 3 C -0.132 4.132 4 C 0.214 3.786 5 N -0.519 5.519 6 C -0.051 4.051 7 C -0.057 4.057 8 N -0.444 5.444 9 C 0.084 3.916 10 C 0.495 3.505 11 O -0.573 6.573 12 N -0.702 5.702 13 C 0.126 3.874 14 C 0.161 3.839 15 H 0.064 0.936 16 C -0.157 4.157 17 N -0.731 5.731 18 C -0.235 4.235 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.275 1.275 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.185 0.815 34 H 0.193 0.807 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.415 0.585 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.373 0.627 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 10.422 2.238 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.031 4.031 3 C -0.190 4.190 4 C -0.048 4.048 5 N -0.238 5.238 6 C -0.197 4.197 7 C -0.189 4.189 8 N -0.126 5.126 9 C -0.042 4.042 10 C 0.280 3.720 11 O -0.453 6.453 12 N -0.354 5.354 13 C 0.002 3.998 14 C 0.052 3.948 15 H 0.082 0.918 16 C -0.218 4.218 17 N -0.372 5.372 18 C -0.367 4.367 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.616 5.616 22 Si 0.794 3.206 23 H -0.212 1.212 24 H -0.229 1.229 25 H -0.201 1.201 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.202 0.798 34 H 0.210 0.790 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.252 0.748 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.205 0.795 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.448 11.614 2.606 17.223 hybrid contribution 1.137 -2.206 -0.364 2.509 sum -11.310 9.408 2.242 14.881 Atomic orbital electron populations 1.21734 0.91662 1.02394 1.03135 1.19692 0.97538 0.95658 0.90230 1.21689 0.99903 0.94419 1.02973 1.23635 0.96577 0.88541 0.96091 1.70119 1.25985 1.27806 0.99894 1.22621 1.01968 0.94669 1.00470 1.23097 1.07597 1.05519 0.82720 1.45009 1.37878 1.23201 1.06467 1.21900 0.95075 0.98086 0.89151 1.21076 0.86435 0.84096 0.80371 1.90746 1.68755 1.28700 1.57102 1.45864 1.25551 1.33746 1.30190 1.21548 0.85283 0.96739 0.96280 1.20669 0.95742 0.83639 0.94746 0.91771 1.22258 0.98184 1.00498 1.00821 1.42593 1.86997 1.00784 1.06842 1.19528 1.39877 0.87364 0.89932 0.90385 1.25394 1.03682 0.99016 0.97846 1.69791 1.58205 1.15539 1.18094 0.85355 0.78105 0.78338 0.78760 1.21178 1.22928 1.20076 0.89623 0.92525 0.92652 0.89341 0.94799 0.89570 0.92614 0.79780 0.79028 0.83639 0.83105 0.74763 0.90138 0.93462 0.94147 0.93641 0.90906 0.79505 0.94238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.18 71.98 0.66 -1.57 16 2 C -0.01 -0.23 3.25 -11.54 -0.04 -0.27 16 3 C -0.13 -2.89 9.18 71.98 0.66 -2.23 16 4 C 0.21 5.83 6.40 138.13 0.88 6.72 16 5 N -0.52 -15.82 11.25 -188.13 -2.12 -17.94 16 6 C -0.05 -1.38 11.87 83.52 0.99 -0.39 16 7 C -0.06 -1.45 11.58 83.09 0.96 -0.49 16 8 N -0.44 -11.33 2.24 -518.33 -1.16 -12.49 16 9 C 0.08 1.73 6.17 85.63 0.53 2.26 16 10 C 0.50 13.86 7.90 87.66 0.69 14.55 16 11 O -0.57 -20.91 16.42 -3.05 -0.05 -20.96 16 12 N -0.70 -19.39 5.39 -463.07 -2.49 -21.88 16 13 C 0.13 3.78 5.23 86.38 0.45 4.23 16 14 C 0.16 5.32 3.05 44.99 0.14 5.45 16 15 H 0.06 2.04 8.08 -2.38 -0.02 2.02 16 16 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16 17 N -0.73 -31.59 4.56 -322.95 -1.47 -33.06 16 18 C -0.24 -11.48 9.93 84.03 0.83 -10.65 16 19 H 0.08 3.65 7.83 -2.91 -0.02 3.62 16 20 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 21 N -0.97 -54.37 13.06 21.65 0.28 -54.09 16 22 Si 0.96 42.57 29.55 68.60 2.03 44.60 16 23 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.62 6.85 -2.39 -0.02 1.61 16 30 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.15 2.14 7.28 -2.38 -0.02 2.12 16 37 H 0.42 11.14 8.14 -92.70 -0.75 10.39 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.37 17.89 7.80 -92.71 -0.72 17.17 16 44 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -68.35 370.61 2.44 -65.91 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.48 Total: 39.50 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 7.91 Total: 10.42 kcal Atomic # 7 Polarization: -132.49 SS G_CDS: -6.96 Total: -139.46 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -68.35 2.44 -65.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752906454.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.645 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds