Wall clock time and date at job start Fri Apr 10 2020 17:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50696 * 109.47117 * 120.00104 * 2 1 3 5 5 N 1.30498 * 125.65039 * 300.02236 * 4 2 1 6 6 C 1.34129 * 109.25671 * 179.73373 * 5 4 2 7 7 C 1.34666 * 108.02165 * 0.40230 * 6 5 4 8 8 N 1.35047 * 125.65399 * 119.99774 * 4 2 1 9 9 C 1.46507 * 126.39328 * 0.02641 * 8 4 2 10 10 C 1.50694 * 109.47371 * 85.01751 * 9 8 4 11 11 O 1.21287 * 120.00054 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00517 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47593 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.47000 * 295.00460 * 14 13 12 16 16 C 1.52991 * 109.47247 * 174.99724 * 14 13 12 17 17 N 1.46505 * 109.46856 * 55.00076 * 14 13 12 18 18 C 1.36937 * 119.99780 * 205.00269 * 17 14 13 19 19 H 1.07996 * 120.00276 * 359.97438 * 18 17 14 20 20 C 1.38818 * 119.99764 * 179.97438 * 18 17 14 21 21 N 1.31617 * 120.00146 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99888 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47050 * 90.00047 * 22 20 18 24 24 H 1.48498 * 109.46933 * 209.99686 * 22 20 18 25 25 H 1.48497 * 109.46941 * 330.00018 * 22 20 18 26 26 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47224 * 299.99697 * 1 2 3 28 28 H 1.09000 * 109.47450 * 59.99883 * 1 2 3 29 29 H 1.09000 * 109.46769 * 240.00023 * 2 1 3 30 30 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47289 * 299.99328 * 3 2 1 32 32 H 1.09000 * 109.47415 * 60.00418 * 3 2 1 33 33 H 1.08003 * 125.99108 * 180.25065 * 6 5 4 34 34 H 1.08002 * 126.59556 * 179.87817 * 7 6 5 35 35 H 1.09000 * 109.46583 * 205.02344 * 9 8 4 36 36 H 1.09008 * 109.46472 * 325.01713 * 9 8 4 37 37 H 0.97009 * 119.99750 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47056 * 300.00313 * 13 12 10 39 39 H 1.09001 * 109.46877 * 59.99590 * 13 12 10 40 40 H 1.09001 * 109.47548 * 179.97438 * 16 14 13 41 41 H 1.09001 * 109.47721 * 300.00294 * 16 14 13 42 42 H 1.08999 * 109.47204 * 60.00382 * 16 14 13 43 43 H 0.96999 * 120.00091 * 24.99412 * 17 14 13 44 44 H 0.96999 * 120.00440 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7856 -0.3623 2.4637 6 6 2.3883 -1.2246 3.2957 7 6 3.0403 -2.1367 2.5498 8 7 2.8120 -1.8131 1.2396 9 6 3.3189 -2.5290 0.0662 10 6 4.5913 -1.8767 -0.4094 11 8 5.0318 -0.9092 0.1745 12 7 5.2405 -2.3690 -1.4831 13 6 6.4778 -1.7352 -1.9452 14 6 7.0077 -2.4836 -3.1699 15 1 7.2921 -3.4958 -2.8821 16 6 8.2288 -1.7495 -3.7272 17 7 5.9633 -2.5428 -4.1956 18 6 5.9761 -3.5450 -5.1286 19 1 6.7562 -4.2916 -5.1086 20 6 4.9862 -3.6014 -6.1002 21 7 4.0352 -2.6919 -6.1244 22 14 5.0040 -4.9682 -7.3735 23 1 4.2256 -6.1268 -6.8668 24 1 4.3952 -4.4768 -8.6356 25 1 6.4053 -5.3874 -7.6301 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 2.3582 -1.1916 4.3748 34 1 3.6267 -2.9668 2.9151 35 1 3.5200 -3.5667 0.3326 36 1 2.5742 -2.4959 -0.7292 37 1 4.8883 -3.1430 -1.9499 38 1 6.2769 -0.6976 -2.2118 39 1 7.2220 -1.7682 -1.1495 40 1 8.6067 -2.2830 -4.5995 41 1 7.9444 -0.7374 -4.0149 42 1 9.0059 -1.7055 -2.9641 43 1 5.2628 -1.8721 -4.2138 44 1 3.3433 -2.7314 -6.8030 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752906455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:23 Heat of formation + Delta-G solvation = 4.992314 kcal Electronic energy + Delta-G solvation = -24021.686278 eV Core-core repulsion = 20588.302162 eV Total energy + Delta-G solvation = -3433.384116 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.14924 -40.66548 -37.95907 -36.29009 -35.23699 -34.97749 -33.62657 -30.67002 -29.86661 -29.13563 -28.06808 -26.71428 -25.55784 -23.81866 -22.38523 -21.77324 -21.61924 -20.09371 -19.34986 -18.41346 -18.26700 -17.08208 -16.70579 -16.52752 -16.01748 -15.83992 -15.49433 -15.25612 -15.11849 -14.62904 -14.52155 -14.28782 -14.00050 -13.80874 -13.67064 -13.63871 -13.18224 -13.05939 -13.02814 -12.76303 -12.50952 -12.42132 -12.17178 -12.15476 -11.91394 -11.72026 -11.65899 -11.43565 -10.96375 -10.92527 -10.46351 -10.10229 -9.25882 -9.01333 -7.90420 -5.19130 1.01097 1.46344 1.51252 1.53556 1.60114 1.68416 2.21712 2.32443 2.59044 3.40768 3.44004 3.63428 3.70693 3.77757 3.89022 3.98243 4.06857 4.12654 4.18548 4.34580 4.38405 4.59958 4.62863 4.71615 4.73185 4.77860 4.83795 4.88386 4.92421 5.04638 5.05718 5.25102 5.25261 5.30484 5.35634 5.41725 5.56175 5.58790 5.88350 6.15890 6.30303 6.50082 7.11853 7.17616 7.38606 8.09783 8.34734 9.31940 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.003764 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.304358 B = 7436.726403 C = 8111.160771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.013 4.013 3 C -0.131 4.131 4 C 0.212 3.788 5 N -0.518 5.518 6 C -0.054 4.054 7 C -0.051 4.051 8 N -0.443 5.443 9 C 0.084 3.916 10 C 0.495 3.505 11 O -0.573 6.573 12 N -0.702 5.702 13 C 0.126 3.874 14 C 0.161 3.839 15 H 0.063 0.937 16 C -0.157 4.157 17 N -0.730 5.730 18 C -0.235 4.235 19 H 0.077 0.923 20 C -0.065 4.065 21 N -0.964 5.964 22 Si 0.963 3.037 23 H -0.286 1.286 24 H -0.304 1.304 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.187 0.813 34 H 0.203 0.797 35 H 0.160 0.840 36 H 0.138 0.862 37 H 0.415 0.585 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.374 0.626 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 -1.039 13.835 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.033 4.033 3 C -0.189 4.189 4 C -0.051 4.051 5 N -0.237 5.237 6 C -0.200 4.200 7 C -0.183 4.183 8 N -0.125 5.125 9 C -0.042 4.042 10 C 0.280 3.720 11 O -0.453 6.453 12 N -0.354 5.354 13 C 0.001 3.999 14 C 0.052 3.948 15 H 0.081 0.919 16 C -0.217 4.217 17 N -0.372 5.372 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.258 4.258 21 N -0.615 5.615 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.204 0.796 34 H 0.219 0.781 35 H 0.177 0.823 36 H 0.155 0.845 37 H 0.252 0.748 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.206 0.794 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.206 0.060 14.293 14.463 hybrid contribution 0.277 -1.250 -1.396 1.895 sum -1.929 -1.190 12.897 13.095 Atomic orbital electron populations 1.21720 0.91717 1.02387 1.03032 1.19629 0.97576 0.95678 0.90406 1.21674 0.99845 0.94531 1.02852 1.23439 0.96975 0.88860 0.95814 1.70118 1.25929 1.27915 0.99775 1.22676 1.02080 0.94753 1.00517 1.23160 1.07408 1.05495 0.82228 1.45024 1.37770 1.23045 1.06676 1.21899 0.94813 0.98592 0.88916 1.21081 0.86238 0.84148 0.80519 1.90745 1.68558 1.28351 1.57642 1.45866 1.25946 1.33968 1.29595 1.21546 0.85876 0.96292 0.96139 1.20662 0.89198 0.97729 0.87204 0.91896 1.22255 0.98396 1.00082 1.01014 1.42588 1.29754 1.32096 1.32732 1.19545 1.07486 1.03911 1.05722 0.90479 1.25375 0.98070 1.00843 1.01532 1.69790 1.16438 1.37621 1.37606 0.85302 0.77496 0.79194 0.78679 1.21303 1.23106 1.19947 0.92482 0.92189 0.90235 0.90311 0.94853 0.90246 0.92118 0.79585 0.78058 0.82266 0.84475 0.74772 0.93322 0.90287 0.93644 0.94056 0.90991 0.79426 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.18 71.98 0.66 -2.12 16 2 C -0.01 -0.32 3.25 -11.54 -0.04 -0.36 16 3 C -0.13 -3.46 9.18 71.98 0.66 -2.80 16 4 C 0.21 6.12 6.40 138.13 0.88 7.00 16 5 N -0.52 -16.07 11.25 -188.13 -2.12 -18.19 16 6 C -0.05 -1.40 11.87 83.52 0.99 -0.40 16 7 C -0.05 -1.18 11.58 83.09 0.96 -0.21 16 8 N -0.44 -11.23 2.24 -518.33 -1.16 -12.39 16 9 C 0.08 1.73 6.17 85.63 0.53 2.25 16 10 C 0.49 13.87 7.90 87.66 0.69 14.56 16 11 O -0.57 -20.91 16.42 -3.05 -0.05 -20.96 16 12 N -0.70 -19.43 5.39 -463.07 -2.49 -21.92 16 13 C 0.13 3.79 5.23 86.38 0.45 4.24 16 14 C 0.16 5.32 3.05 44.99 0.14 5.46 16 15 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 16 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16 17 N -0.73 -31.47 4.56 -322.94 -1.47 -32.94 16 18 C -0.23 -11.44 9.93 84.03 0.83 -10.61 16 19 H 0.08 3.62 7.83 -2.91 -0.02 3.59 16 20 C -0.07 -3.39 5.50 84.86 0.47 -2.92 16 21 N -0.96 -53.96 13.06 21.65 0.28 -53.68 16 22 Si 0.96 42.53 29.55 68.60 2.03 44.56 16 23 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.08 1.99 6.85 -2.39 -0.02 1.97 16 30 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.20 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.14 2.48 7.28 -2.38 -0.02 2.46 16 37 H 0.42 11.17 8.14 -92.70 -0.75 10.41 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.37 17.81 7.80 -92.71 -0.72 17.09 16 44 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -67.89 370.61 2.44 -65.45 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.48 Total: 40.20 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 7.91 Total: 9.87 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -6.96 Total: -139.12 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -67.89 2.44 -65.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752906455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.440 kcal (2) G-P(sol) polarization free energy of solvation -67.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds