Wall clock time and date at job start Fri Apr 10 2020 17:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47298 * 2 1 4 4 C 1.53003 * 109.47187 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46747 * 299.99811 * 4 3 2 6 6 N 1.46899 * 109.46826 * 180.02562 * 5 4 3 7 7 C 1.46847 * 110.99862 * 175.00223 * 6 5 4 8 8 C 1.53044 * 109.51335 * 174.15436 * 7 6 5 9 9 C 1.53119 * 109.27589 * 59.18419 * 8 7 6 10 10 N 1.46906 * 109.51848 * 182.44058 * 9 8 7 11 11 C 1.46900 * 110.99603 * 303.95255 * 10 9 8 12 12 C 1.46895 * 110.99877 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47272 * 190.00092 * 12 10 9 14 14 H 1.08009 * 119.99601 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00339 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99956 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00036 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47190 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46954 * 120.00232 * 17 15 13 20 20 H 1.48504 * 109.47055 * 240.00013 * 17 15 13 21 21 C 1.53120 * 109.16202 * 302.34077 * 9 8 7 22 22 C 1.46847 * 110.99299 * 50.79381 * 6 5 4 23 23 C 1.52999 * 109.47122 * 60.00150 * 5 4 3 24 24 C 1.52995 * 109.46957 * 299.99973 * 23 5 4 25 25 H 1.09002 * 109.47380 * 59.99785 * 1 2 3 26 26 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46970 * 300.00072 * 1 2 3 28 28 H 1.09005 * 109.46970 * 239.99928 * 2 1 3 29 29 H 1.08996 * 109.47272 * 60.00042 * 3 2 1 30 30 H 1.09006 * 109.46922 * 299.99924 * 3 2 1 31 31 H 1.08995 * 109.46944 * 180.02562 * 4 3 2 32 32 H 1.08996 * 109.47260 * 59.99692 * 4 3 2 33 33 H 1.08996 * 109.47144 * 299.99953 * 5 4 3 34 34 H 1.09002 * 109.46448 * 54.14158 * 7 6 5 35 35 H 1.08994 * 109.45958 * 294.16523 * 7 6 5 36 36 H 1.09000 * 109.49745 * 179.12223 * 8 7 6 37 37 H 1.08999 * 109.49729 * 299.20033 * 8 7 6 38 38 H 1.08993 * 109.52284 * 62.25342 * 9 8 7 39 39 H 1.09000 * 109.47230 * 60.00499 * 11 10 9 40 40 H 1.09009 * 109.46765 * 179.97438 * 11 10 9 41 41 H 1.08993 * 109.47699 * 299.99782 * 11 10 9 42 42 H 1.09007 * 109.47038 * 309.99919 * 12 10 9 43 43 H 1.08999 * 109.47206 * 69.99636 * 12 10 9 44 44 H 0.97007 * 120.00165 * 179.97438 * 16 15 13 45 45 H 1.08996 * 109.50328 * 177.59853 * 21 9 8 46 46 H 1.09004 * 109.50202 * 297.68149 * 21 9 8 47 47 H 1.09005 * 109.46836 * 65.83946 * 22 6 5 48 48 H 1.08995 * 109.45748 * 305.85482 * 22 6 5 49 49 H 1.09005 * 109.47169 * 59.99874 * 23 5 4 50 50 H 1.08994 * 109.47231 * 179.97438 * 23 5 4 51 51 H 1.09004 * 109.47357 * 299.99469 * 24 23 5 52 52 H 1.09003 * 109.47463 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0805 0.7210 1.2484 6 7 5.5495 0.7215 1.2481 7 6 6.0762 0.1419 2.4903 8 6 7.5991 0.0249 2.3944 9 6 8.1992 1.4145 2.1629 10 7 9.6560 1.3009 2.0116 11 6 10.2556 0.6341 3.1752 12 6 10.2663 2.6183 1.7881 13 6 11.7106 2.4428 1.3956 14 1 12.1331 1.4516 1.3202 15 6 12.4927 3.5474 1.1327 16 7 11.9782 4.7542 1.2241 17 14 14.2833 3.3297 0.6469 18 1 14.6153 1.8828 0.6155 19 1 14.5061 3.9176 -0.6986 20 1 15.1518 4.0161 1.6369 21 6 7.5980 2.0158 0.8895 22 6 6.0751 2.0751 1.0290 23 6 3.5705 -0.7215 1.2484 24 6 2.0405 -0.7214 1.2489 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.9334 2.4701 -0.0002 32 1 3.9330 0.9287 -0.8908 33 1 3.7175 1.2347 2.1385 34 1 5.6446 -0.8477 2.6409 35 1 5.8135 0.7844 3.3307 36 1 7.9912 -0.3908 3.3225 37 1 7.8621 -0.6290 1.5629 38 1 7.9693 2.0568 3.0129 39 1 9.8358 -0.3667 3.2767 40 1 11.3346 0.5628 3.0370 41 1 10.0416 1.2109 4.0748 42 1 9.7331 3.1350 0.9900 43 1 10.2075 3.2061 2.7041 44 1 12.5286 5.5314 1.0395 45 1 7.9894 3.0224 0.7425 46 1 7.8616 1.3941 0.0338 47 1 5.8125 2.7083 1.8765 48 1 5.6428 2.4894 0.1182 49 1 3.9335 -1.2352 0.3582 50 1 3.9344 -1.2356 2.1379 51 1 1.6775 -0.2077 2.1392 52 1 1.6770 -1.7490 1.2485 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069490694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:10 Heat of formation + Delta-G solvation = -33.881184 kcal Electronic energy + Delta-G solvation = -24950.262529 eV Core-core repulsion = 21754.566170 eV Total energy + Delta-G solvation = -3195.696359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 294.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95600 -39.34888 -37.34842 -34.89362 -33.58491 -32.50569 -31.30563 -30.99837 -29.11745 -27.26631 -26.19804 -24.62562 -24.29126 -22.58873 -22.42983 -21.31801 -20.67087 -20.40895 -18.59318 -17.48746 -16.74857 -16.23291 -16.04064 -15.81895 -15.50536 -15.38808 -15.18884 -15.09077 -14.67880 -14.27687 -14.15346 -13.96180 -13.89831 -13.70084 -13.28884 -13.13605 -13.08216 -12.87688 -12.71061 -12.62919 -12.26411 -12.22447 -12.14747 -12.05064 -12.00640 -11.88873 -11.77651 -11.53468 -11.35528 -11.17532 -11.10206 -11.04980 -10.64525 -10.55681 -9.23500 -9.00822 -8.20700 -6.30344 1.39792 1.40664 1.54462 2.39884 2.87008 3.11467 3.28193 3.68549 3.79769 3.90468 3.92719 4.07092 4.16144 4.19033 4.27944 4.31405 4.44284 4.48109 4.50418 4.57284 4.60579 4.61106 4.64782 4.65983 4.72266 4.83083 4.85448 4.87421 4.92025 4.96269 5.02975 5.04170 5.08476 5.14369 5.18534 5.19582 5.26225 5.29775 5.32915 5.35924 5.36135 5.45124 5.45604 5.46967 5.64933 5.66979 6.07322 6.15808 6.26597 6.36399 6.67510 6.86388 7.39108 8.90735 Molecular weight = 294.24amu Principal moments of inertia in cm(-1) A = 0.033551 B = 0.002833 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.347603 B = 9880.584546 C =10412.788598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.116 4.116 5 C 0.088 3.912 6 N -0.538 5.538 7 C 0.063 3.937 8 C -0.098 4.098 9 C 0.085 3.915 10 N -0.544 5.544 11 C 0.039 3.961 12 C 0.206 3.794 13 C -0.521 4.521 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.102 4.102 22 C 0.066 3.934 23 C -0.106 4.106 24 C -0.108 4.108 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.008 0.992 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.005 0.995 42 H 0.014 0.986 43 H -0.048 1.048 44 H 0.264 0.736 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.090 0.910 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.061 0.939 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.849 -11.102 0.296 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.146 4.146 4 C -0.154 4.154 5 C -0.020 4.020 6 N -0.263 5.263 7 C -0.065 4.065 8 C -0.136 4.136 9 C -0.024 4.024 10 N -0.268 5.268 11 C -0.109 4.109 12 C 0.080 3.920 13 C -0.560 4.560 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.795 3.205 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.140 4.140 22 C -0.062 4.062 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.026 0.974 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.032 0.968 43 H -0.031 1.031 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.108 0.892 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.079 0.921 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.547 -11.510 -0.515 25.320 hybrid contribution 0.896 1.714 1.240 2.297 sum -21.650 -9.796 0.725 23.775 Atomic orbital electron populations 1.21806 0.94516 1.02017 1.01872 1.21146 0.95904 0.95600 0.98413 1.21556 0.93973 0.96935 1.02126 1.21687 0.96203 0.99890 0.97589 1.21666 0.85696 0.97336 0.97293 1.61987 1.07779 1.20622 1.35886 1.22097 0.94322 1.00386 0.89725 1.21607 0.94431 0.95239 1.02358 1.21678 0.87982 0.97021 0.95721 1.62132 1.03044 1.22342 1.39252 1.22252 1.00250 0.98449 0.89996 1.19431 0.94314 0.85203 0.93095 1.21516 0.95891 0.92990 1.45569 0.91966 1.25931 1.03629 0.94717 0.95547 1.70100 1.38183 0.98570 1.50787 0.85322 0.78783 0.78595 0.77839 1.18712 1.20333 1.20406 1.21550 0.94700 0.99836 0.97929 1.22036 0.93745 0.89587 1.00819 1.21556 0.95750 0.94737 1.02388 1.21556 0.94190 1.00923 0.97901 0.92503 0.92218 0.92693 0.91438 0.92117 0.91299 0.92278 0.91635 0.94933 0.88430 0.95618 0.90692 0.90977 0.97437 0.89738 0.92529 0.97691 0.96764 1.03066 0.92735 0.93771 0.91616 0.95856 0.89210 0.91696 0.91674 0.92070 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 71.98 0.66 -0.92 16 2 C -0.09 -1.22 2.72 -10.79 -0.03 -1.25 16 3 C -0.11 -1.61 5.20 30.60 0.16 -1.45 16 4 C -0.12 -2.18 4.66 30.60 0.14 -2.04 16 5 C 0.09 1.78 1.96 44.92 0.09 1.86 16 6 N -0.54 -13.56 4.52 -871.09 -3.94 -17.50 16 7 C 0.06 1.54 5.29 86.33 0.46 1.99 16 8 C -0.10 -2.89 4.93 30.65 0.15 -2.74 16 9 C 0.08 3.20 2.01 44.99 0.09 3.29 16 10 N -0.54 -24.64 4.62 -901.14 -4.17 -28.80 16 11 C 0.04 1.55 8.92 127.69 1.14 2.69 16 12 C 0.21 11.42 4.54 85.56 0.39 11.80 16 13 C -0.52 -30.47 8.46 25.60 0.22 -30.25 16 14 H 0.06 3.57 7.12 -2.91 -0.02 3.55 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 16 N -0.94 -57.59 13.29 21.44 0.28 -57.31 16 17 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C -0.10 -3.75 5.10 30.65 0.16 -3.60 16 22 C 0.07 1.92 5.01 86.33 0.43 2.35 16 23 C -0.11 -1.80 5.12 30.59 0.16 -1.64 16 24 C -0.11 -1.45 5.20 30.59 0.16 -1.29 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 1.18 6.18 -2.39 -0.01 1.17 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.03 0.69 8.13 -2.39 -0.02 0.67 16 34 H 0.10 1.96 6.18 -2.39 -0.01 1.95 16 35 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 2.01 6.50 -2.39 -0.02 2.00 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.08 2.74 6.30 -2.39 -0.02 2.73 16 40 H 0.06 2.44 6.76 -2.38 -0.02 2.42 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 42 H 0.01 0.85 5.90 -2.38 -0.01 0.83 16 43 H -0.05 -2.95 8.12 -2.39 -0.02 -2.97 16 44 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 45 H 0.04 1.86 6.35 -2.39 -0.02 1.84 16 46 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 47 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.09 2.38 5.83 -2.39 -0.01 2.37 16 49 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.06 1.06 6.40 -2.39 -0.02 1.04 16 51 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -64.75 375.41 -0.12 -64.87 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.85 Total: 12.22 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 4.83 Total: -20.76 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -7.82 Total: -103.61 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.75 -0.12 -64.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069490694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.992 kcal (2) G-P(sol) polarization free energy of solvation -64.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds