Wall clock time and date at job start Fri Apr 10 2020 17:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86792 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47238 * 240.00217 * 3 2 1 5 5 H 1.48499 * 109.47508 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47232 * 120.00383 * 3 2 1 7 7 C 1.38955 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99561 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99894 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99767 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00177 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47165 * 173.73207 * 12 10 9 14 14 C 1.46827 * 111.00149 * 169.24860 * 13 12 10 15 15 C 1.53046 * 109.40069 * 185.45074 * 14 13 12 16 16 C 1.52992 * 109.33006 * 301.12245 * 15 14 13 17 17 C 1.54029 * 108.96057 * 58.86158 * 16 15 14 18 18 C 1.46688 * 111.00295 * 293.60861 * 13 12 10 19 19 C 1.54845 * 107.01278 * 55.76129 * 17 16 15 20 20 C 1.50182 * 109.19567 * 43.63792 * 19 17 16 21 21 C 1.54300 * 112.85535 * 94.15474 * 20 19 17 22 22 C 1.53986 * 112.76068 * 318.03576 * 21 20 19 23 23 C 1.50540 * 111.99975 * 318.61068 * 22 21 20 24 24 C 1.45964 * 111.58086 * 177.95177 * 17 16 15 25 25 H 0.97001 * 119.99509 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00073 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47092 * 293.72812 * 12 10 9 28 28 H 1.08994 * 109.47214 * 53.72951 * 12 10 9 29 29 H 1.09008 * 109.48380 * 305.42734 * 14 13 12 30 30 H 1.09004 * 109.48465 * 65.47213 * 14 13 12 31 31 H 1.08996 * 109.49691 * 181.15948 * 15 14 13 32 32 H 1.09001 * 109.49098 * 61.07766 * 15 14 13 33 33 H 1.08996 * 109.55476 * 299.01701 * 16 15 14 34 34 H 1.09004 * 109.63956 * 178.75747 * 16 15 14 35 35 H 1.09005 * 109.47426 * 293.13487 * 18 13 12 36 36 H 1.08999 * 109.47618 * 53.14508 * 18 13 12 37 37 H 1.08997 * 109.52276 * 163.55088 * 19 17 16 38 38 H 1.08999 * 109.51971 * 283.72192 * 19 17 16 39 39 H 1.08995 * 108.80485 * 333.28003 * 20 19 17 40 40 H 1.08998 * 108.80596 * 215.02587 * 20 19 17 41 41 H 1.09005 * 108.82308 * 197.18958 * 21 20 19 42 42 H 1.08997 * 108.74080 * 78.82265 * 21 20 19 43 43 H 1.09001 * 108.97519 * 197.96571 * 22 21 20 44 44 H 1.08999 * 108.91303 * 79.21933 * 22 21 20 45 45 H 1.09000 * 109.70199 * 334.84073 * 23 22 21 46 46 H 1.09000 * 109.73342 * 214.26023 * 23 22 21 47 47 H 1.09003 * 108.75875 * 62.85392 * 24 17 16 48 48 H 1.08995 * 108.76118 * 181.11511 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2834 2.7464 0.0006 6 1 3.1021 1.6962 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2435 -4.8629 -0.0011 13 7 2.1909 -5.9754 -0.1522 14 6 1.5330 -7.2643 0.0963 15 6 2.5773 -8.3827 0.0636 16 6 3.2700 -8.3891 -1.3005 17 6 3.9323 -7.0179 -1.5319 18 6 2.8278 -5.9478 -1.4733 19 6 4.8796 -6.7643 -0.3335 20 6 5.6426 -8.0223 -0.0323 21 6 7.0183 -8.0702 -0.7293 22 6 6.9679 -7.5634 -2.1825 23 6 5.7445 -8.0549 -2.9090 24 6 4.6530 -6.9770 -2.8006 25 1 -0.4849 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.7033 -4.9710 0.9395 28 1 0.5357 -4.8734 -0.8299 29 1 1.0521 -7.2444 1.0743 30 1 0.7833 -7.4443 -0.6742 31 1 2.0875 -9.3425 0.2275 32 1 3.3167 -8.2129 0.8463 33 1 2.5340 -8.5754 -2.0825 34 1 4.0303 -9.1698 -1.3216 35 1 2.0815 -6.1534 -2.2409 36 1 3.2649 -4.9643 -1.6456 37 1 5.5781 -5.9660 -0.5839 38 1 4.2936 -6.4761 0.5393 39 1 5.0525 -8.8781 -0.3602 40 1 5.7918 -8.0934 1.0451 41 1 7.3776 -9.0994 -0.7279 42 1 7.7181 -7.4532 -0.1657 43 1 7.8565 -7.9104 -2.7099 44 1 6.9627 -6.4735 -2.1766 45 1 5.3933 -8.9805 -2.4530 46 1 5.9847 -8.2301 -3.9577 47 1 3.9401 -7.1169 -3.6133 48 1 5.1183 -5.9972 -2.9080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098015867.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:28 Heat of formation + Delta-G solvation = -58.754466 kcal Electronic energy + Delta-G solvation = -25550.934702 eV Core-core repulsion = 22218.326662 eV Total energy + Delta-G solvation = -3332.608040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78349 -40.03730 -37.83797 -35.91634 -34.30894 -33.48064 -33.22108 -32.18817 -29.16465 -27.81754 -26.58280 -25.59982 -24.80119 -23.70889 -21.73701 -20.93473 -20.18384 -19.83211 -19.07041 -17.72669 -17.26765 -16.62490 -16.47161 -16.02844 -15.87882 -15.55438 -15.44347 -15.18525 -15.01681 -14.80566 -14.06653 -13.84067 -13.77668 -13.50744 -13.45972 -13.15592 -13.11996 -12.86127 -12.77623 -12.48344 -12.43710 -12.29028 -12.13285 -11.86834 -11.64402 -11.46717 -11.23987 -11.20721 -11.11685 -10.99728 -10.88510 -10.61741 -10.19625 -9.98090 -9.07414 -8.45912 -5.94208 1.38606 1.39810 1.50857 2.08118 2.28314 2.80907 3.20947 3.38003 3.60929 3.81020 3.96868 4.09837 4.15653 4.22203 4.28370 4.31220 4.36525 4.43728 4.51309 4.52070 4.55637 4.61117 4.64579 4.73032 4.76076 4.82499 4.97354 4.99219 5.01099 5.07928 5.11484 5.26801 5.28225 5.32332 5.39449 5.40083 5.42092 5.44249 5.49370 5.58001 5.61158 5.76697 5.87446 5.94278 6.15798 6.34213 6.62587 7.14370 7.58466 8.15163 8.71605 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.003971 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.944852 B = 7049.591032 C = 7805.304087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.578 5.578 10 C 0.442 3.558 11 O -0.608 6.608 12 C 0.057 3.943 13 N -0.525 5.525 14 C 0.053 3.947 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.041 4.041 18 C 0.069 3.931 19 C -0.091 4.091 20 C -0.128 4.128 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.106 4.106 24 C -0.104 4.104 25 H 0.277 0.723 26 H 0.394 0.606 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.022 0.978 36 H 0.045 0.955 37 H 0.021 0.979 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 -20.385 -3.538 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.216 5.216 10 C 0.229 3.771 11 O -0.493 6.493 12 C -0.075 4.075 13 N -0.249 5.249 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.042 4.042 18 C -0.059 4.059 19 C -0.129 4.129 20 C -0.165 4.165 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.143 4.143 24 C -0.142 4.142 25 H 0.086 0.914 26 H 0.228 0.772 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.003 -20.168 -3.170 21.280 hybrid contribution -0.879 1.660 -0.488 1.941 sum 5.124 -18.508 -3.658 19.550 Atomic orbital electron populations 1.69673 1.06809 1.29246 1.50642 1.26005 0.96518 1.02294 0.96431 0.85018 0.77782 0.76829 0.78880 1.19829 1.19384 1.19767 1.19590 0.92574 0.84061 1.49786 0.90514 1.41947 1.09206 1.04725 1.65687 1.20790 0.88401 0.85859 0.82062 1.90488 1.15497 1.87743 1.55580 1.21726 0.93506 0.89073 1.03151 1.61346 1.30925 1.02045 1.30588 1.22251 0.95951 0.88069 1.01176 1.21656 0.98087 0.97548 0.97967 1.22059 0.99605 0.96010 0.97293 1.19745 0.94101 0.94792 0.95547 1.22233 0.96048 0.99529 0.88083 1.21244 0.96690 0.96695 0.98235 1.21643 0.96303 0.98989 0.99587 1.21940 0.96839 1.01265 0.95147 1.21357 0.98668 0.99879 0.95819 1.21230 0.94113 0.98359 1.00595 1.20362 0.98260 0.99057 0.96508 0.91366 0.77201 0.87309 0.92339 0.90086 0.94497 0.89176 0.91320 0.91986 0.88810 0.95947 0.93631 0.95996 0.91937 0.88987 0.93129 0.90758 0.93760 0.91305 0.94393 0.89935 0.90903 0.92223 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.86 13.05 21.67 0.28 -50.58 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.97 29.55 68.60 2.03 46.00 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -30.58 5.29 -306.99 -1.62 -32.20 16 10 C 0.44 21.74 7.30 87.66 0.64 22.38 16 11 O -0.61 -34.36 14.30 -3.07 -0.04 -34.41 16 12 C 0.06 2.07 5.45 85.56 0.47 2.53 16 13 N -0.52 -17.42 2.96 -899.61 -2.66 -20.08 16 14 C 0.05 1.27 5.48 86.33 0.47 1.74 16 15 C -0.12 -2.27 5.44 30.61 0.17 -2.11 16 16 C -0.11 -2.23 4.03 30.94 0.12 -2.10 16 17 C -0.04 -1.10 0.57 -53.06 -0.03 -1.13 16 18 C 0.07 2.35 3.91 86.65 0.34 2.69 16 19 C -0.09 -2.73 3.87 30.32 0.12 -2.61 16 20 C -0.13 -2.84 4.21 30.13 0.13 -2.71 16 21 C -0.11 -2.29 5.86 31.37 0.18 -2.11 16 22 C -0.12 -2.45 5.35 30.13 0.16 -2.29 16 23 C -0.11 -1.97 5.54 30.06 0.17 -1.81 16 24 C -0.10 -2.56 4.11 28.70 0.12 -2.44 16 25 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.39 19.91 7.90 -92.71 -0.73 19.18 16 27 H 0.11 3.50 7.98 -2.39 -0.02 3.48 16 28 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 29 H 0.08 1.80 8.02 -2.38 -0.02 1.78 16 30 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.52 5.78 -2.39 -0.01 1.50 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.50 4.13 -2.39 -0.01 1.49 16 35 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.05 1.99 6.05 -2.39 -0.01 1.98 16 37 H 0.02 0.78 7.02 -2.39 -0.02 0.76 16 38 H 0.06 2.23 5.85 -2.39 -0.01 2.21 16 39 H 0.09 1.67 3.87 -2.39 -0.01 1.67 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.04 0.96 6.63 -2.39 -0.02 0.95 16 45 H 0.08 1.31 5.24 -2.39 -0.01 1.30 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.04 1.09 7.39 -2.39 -0.02 1.07 16 Total: -1.00 -67.10 343.61 2.54 -64.57 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.22 Total: 35.34 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.33 Total: -8.64 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.00 Total: -102.86 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.04 Total: -34.41 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.10 2.54 -64.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098015867.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.813 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds