Wall clock time and date at job start Fri Apr 10 2020 17:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.45151 * 2 1 4 4 C 1.53030 * 109.46250 * 119.97459 * 2 1 3 5 5 C 1.53124 * 109.27735 * 179.19520 * 4 2 1 6 6 C 1.53114 * 109.16005 * 302.34297 * 5 4 2 7 7 C 1.53037 * 109.27731 * 57.65718 * 6 5 4 8 8 N 1.46846 * 109.46131 * 240.02884 * 2 1 3 9 9 C 1.46900 * 111.00050 * 54.14474 * 8 2 1 10 10 C 1.53000 * 109.47134 * 193.93559 * 9 8 2 11 11 H 1.09007 * 109.52968 * 305.09300 * 10 9 8 12 12 C 1.53110 * 109.49777 * 65.19759 * 10 9 8 13 13 C 1.53126 * 109.15352 * 177.60967 * 12 10 9 14 14 C 1.53042 * 109.27680 * 302.34000 * 13 12 10 15 15 N 1.46849 * 109.52167 * 59.17796 * 14 13 12 16 16 C 1.46893 * 111.00218 * 174.15988 * 15 14 13 17 17 C 1.53005 * 109.47107 * 294.21336 * 16 15 14 18 18 C 1.50706 * 109.47043 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00202 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99679 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00349 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47171 * 89.99872 * 22 20 18 24 24 H 1.48498 * 109.47492 * 210.00294 * 22 20 18 25 25 H 1.48507 * 109.47012 * 330.00135 * 22 20 18 26 26 C 1.46851 * 111.19946 * 298.26019 * 15 14 13 27 27 H 1.08994 * 109.47196 * 171.78795 * 1 2 3 28 28 H 1.09003 * 109.47000 * 291.78907 * 1 2 3 29 29 H 1.08997 * 109.47340 * 51.78218 * 1 2 3 30 30 H 1.08999 * 109.50475 * 59.25158 * 4 2 1 31 31 H 1.09004 * 109.50725 * 299.13751 * 4 2 1 32 32 H 1.09003 * 109.52134 * 182.44145 * 5 4 2 33 33 H 1.08992 * 109.57519 * 62.28229 * 5 4 2 34 34 H 1.08997 * 109.50731 * 297.71748 * 6 5 4 35 35 H 1.09004 * 109.53797 * 177.61324 * 6 5 4 36 36 H 1.09003 * 109.46525 * 180.80187 * 7 6 5 37 37 H 1.08999 * 109.45921 * 60.82705 * 7 6 5 38 38 H 1.09002 * 109.47464 * 73.92982 * 9 8 2 39 39 H 1.09008 * 109.47160 * 313.93157 * 9 8 2 40 40 H 1.09002 * 109.53082 * 57.70680 * 12 10 9 41 41 H 1.08999 * 109.57967 * 297.54163 * 12 10 9 42 42 H 1.08997 * 109.50459 * 182.40194 * 13 12 10 43 43 H 1.08993 * 109.50331 * 62.28225 * 13 12 10 44 44 H 1.09004 * 109.46059 * 299.16552 * 14 13 12 45 45 H 1.09000 * 109.46275 * 179.19257 * 14 13 12 46 46 H 1.09010 * 109.46867 * 54.20919 * 16 15 14 47 47 H 1.08994 * 109.47712 * 174.21195 * 16 15 14 48 48 H 1.09001 * 109.46763 * 299.99475 * 17 16 15 49 49 H 1.09002 * 109.47431 * 59.99794 * 17 16 15 50 50 H 0.96990 * 120.00051 * 179.97438 * 21 20 18 51 51 H 1.09004 * 109.46316 * 181.76109 * 26 15 14 52 52 H 1.09001 * 109.45863 * 301.73210 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7360 1.2355 6 6 4.0548 -1.4188 -0.0468 7 6 3.4865 -0.6776 -1.2591 8 7 2.0193 -0.6917 -1.1994 9 6 1.4373 -0.1104 -2.4165 10 6 1.6823 -1.0508 -3.5983 11 1 2.7488 -1.2598 -3.6826 12 6 0.9205 -2.3602 -3.3760 13 6 1.1227 -3.2714 -4.5899 14 6 0.6443 -2.5473 -5.8504 15 7 1.4036 -1.3018 -6.0189 16 6 1.0687 -0.6490 -7.2915 17 6 1.5366 -1.5272 -8.4538 18 6 1.1924 -0.8578 -9.7594 19 1 0.6897 0.0981 -9.7602 20 6 1.5191 -1.4657 -10.9530 21 7 2.1308 -2.6300 -10.9521 22 14 1.0919 -0.6364 -12.5713 23 1 2.2175 0.2354 -12.9931 24 1 0.8511 -1.6708 -13.6092 25 1 -0.1328 0.1855 -12.3981 26 6 1.1876 -0.3910 -4.8874 27 1 -0.3633 -1.0171 -0.1468 28 1 -0.3633 0.3815 0.9543 29 1 -0.3634 0.6357 -0.8074 30 1 1.6659 -1.7447 1.2576 31 1 1.6895 -0.1982 2.1399 32 1 3.9380 -1.2863 2.1019 33 1 3.9467 0.2866 1.2677 34 1 3.7125 -2.4535 -0.0596 35 1 5.1440 -1.3953 -0.0837 36 1 3.8175 -1.1698 -2.1737 37 1 3.8403 0.3533 -1.2531 38 1 1.9032 0.8544 -2.6172 39 1 0.3648 0.0260 -2.2771 40 1 -0.1414 -2.1476 -3.2530 41 1 1.2988 -2.8555 -2.4817 42 1 0.5482 -4.1880 -4.4566 43 1 2.1803 -3.5154 -4.6896 44 1 -0.4167 -2.3159 -5.7557 45 1 0.8001 -3.1879 -6.7185 46 1 -0.0104 -0.5077 -7.3544 47 1 1.5656 0.3196 -7.3450 48 1 2.6156 -1.6684 -8.3909 49 1 1.0396 -2.4958 -8.4004 50 1 2.3603 -3.0579 -11.7918 51 1 1.7380 0.5347 -5.0561 52 1 0.1241 -0.1698 -4.7972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106853268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:30 Heat of formation + Delta-G solvation = -40.090136 kcal Electronic energy + Delta-G solvation = -24817.054281 eV Core-core repulsion = 21621.088681 eV Total energy + Delta-G solvation = -3195.965600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 294.237 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74984 -39.57430 -36.28299 -34.99081 -33.92205 -33.33001 -31.86914 -30.97073 -28.03803 -26.86245 -26.75651 -24.67925 -24.00934 -22.99107 -22.22852 -21.24581 -20.56546 -20.37195 -18.60081 -17.02409 -16.67918 -16.53236 -16.19360 -15.97728 -15.57392 -15.33094 -15.19000 -15.01297 -14.84516 -14.47127 -14.27487 -14.15509 -13.80693 -13.58893 -13.25715 -13.10033 -12.90380 -12.80852 -12.73260 -12.68823 -12.62160 -12.42833 -11.95406 -11.93915 -11.85315 -11.68792 -11.57081 -11.54580 -11.32904 -11.13861 -11.09006 -10.98452 -10.85695 -10.53153 -9.18877 -9.13358 -8.20397 -6.32011 1.39257 1.41200 1.52082 2.39574 2.82224 3.12599 3.17910 3.81541 3.87992 3.90537 3.99018 4.03904 4.08609 4.19877 4.29828 4.38715 4.44746 4.49431 4.50789 4.51458 4.55208 4.62499 4.66381 4.68104 4.71689 4.78303 4.88391 4.93271 4.94713 4.98663 5.02530 5.07936 5.10208 5.11055 5.13396 5.20137 5.25844 5.28554 5.31541 5.36759 5.44191 5.48675 5.55096 5.57253 5.67545 5.79249 6.12266 6.19587 6.29129 6.35267 6.39020 6.85112 7.36964 8.91840 Molecular weight = 294.24amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.002660 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.140750 B =10524.301450 C =10605.581382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 H 0.032 0.968 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.113 4.113 7 C 0.052 3.948 8 N -0.531 5.531 9 C 0.064 3.936 10 C -0.069 4.069 11 H 0.066 0.934 12 C -0.090 4.090 13 C -0.111 4.111 14 C 0.056 3.944 15 N -0.550 5.550 16 C 0.080 3.920 17 C 0.038 3.962 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.263 1.263 26 C 0.063 3.937 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.026 0.974 38 H 0.029 0.971 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.026 0.974 45 H 0.051 0.949 46 H 0.017 0.983 47 H 0.061 0.939 48 H -0.010 1.010 49 H -0.006 1.006 50 H 0.264 0.736 51 H 0.067 0.933 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 4.290 27.154 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 H 0.050 0.950 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.076 4.076 8 N -0.256 5.256 9 C -0.064 4.064 10 C -0.088 4.088 11 H 0.084 0.916 12 C -0.127 4.127 13 C -0.149 4.149 14 C -0.072 4.072 15 N -0.274 5.274 16 C -0.047 4.047 17 C 0.001 3.999 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.792 3.208 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.187 1.187 26 C -0.066 4.066 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.035 0.965 47 H 0.080 0.920 48 H 0.009 0.991 49 H 0.012 0.988 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.796 3.562 27.079 27.324 hybrid contribution -0.517 1.204 -1.502 1.993 sum -1.312 4.766 25.577 26.050 Atomic orbital electron populations 1.21907 0.93816 1.02415 1.02160 1.21664 0.95787 0.95007 0.90414 0.95034 1.21608 0.95466 1.01184 0.96229 1.21578 0.95809 1.00586 0.97764 1.21555 1.00013 0.99819 0.93741 1.22138 0.87440 0.98584 0.99432 1.61921 1.06989 1.55030 1.01638 1.22087 1.00579 0.94702 0.89034 1.21056 1.00307 0.95581 0.91831 0.91610 1.21377 0.99521 0.94673 0.97154 1.21580 1.01367 0.98367 0.93540 1.22083 0.94504 0.91736 0.98875 1.61893 1.57638 1.05831 1.02045 1.21948 0.96765 0.97372 0.88648 1.18909 0.94802 0.94308 0.91926 1.21628 1.38470 1.05953 0.92317 0.92250 1.25982 0.94854 0.95529 1.03370 1.70113 1.41927 1.17300 1.27815 0.85417 0.78978 0.78181 0.78272 1.19683 1.20627 1.18745 1.22098 0.98650 0.95284 0.90537 0.92038 0.90955 0.92844 0.91505 0.90490 0.90874 0.92450 0.91612 0.91038 0.91326 0.95597 0.95305 0.89650 0.92492 0.90209 0.90500 0.92445 0.95539 0.93074 0.96461 0.92015 0.99132 0.98767 0.92733 0.91452 0.95138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.53 71.98 0.61 -1.39 16 2 C 0.08 1.23 2.44 44.94 0.11 1.34 16 3 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 4 C -0.11 -1.40 5.37 30.65 0.16 -1.23 16 5 C -0.12 -1.54 6.00 30.67 0.18 -1.36 16 6 C -0.11 -1.73 6.09 30.64 0.19 -1.54 16 7 C 0.05 0.96 5.31 86.33 0.46 1.42 16 8 N -0.53 -9.79 3.98 -871.09 -3.46 -13.25 16 9 C 0.06 1.30 4.13 86.30 0.36 1.66 16 10 C -0.07 -1.69 2.33 -10.75 -0.03 -1.72 16 11 H 0.07 1.81 6.39 -2.38 -0.02 1.80 16 12 C -0.09 -2.14 5.14 30.67 0.16 -1.99 16 13 C -0.11 -3.14 6.09 30.65 0.19 -2.96 16 14 C 0.06 2.01 5.29 86.33 0.46 2.47 16 15 N -0.55 -20.96 4.66 -896.33 -4.17 -25.14 16 16 C 0.08 3.57 4.90 86.31 0.42 4.00 16 17 C 0.04 2.11 4.90 29.85 0.15 2.25 16 18 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 19 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 20 C 0.00 0.03 5.46 84.65 0.46 0.50 16 21 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 22 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.06 1.88 4.74 86.32 0.41 2.28 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 29 H 0.05 0.76 6.53 -2.39 -0.02 0.75 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.44 6.31 -2.39 -0.02 1.42 16 37 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.03 0.61 8.08 -2.39 -0.02 0.59 16 39 H 0.09 1.63 5.66 -2.38 -0.01 1.62 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.80 7.84 -2.39 -0.02 1.78 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.05 2.15 6.21 -2.39 -0.01 2.14 16 46 H 0.02 0.76 8.12 -2.38 -0.02 0.74 16 47 H 0.06 2.69 7.99 -2.39 -0.02 2.67 16 48 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 49 H -0.01 -0.35 6.43 -2.39 -0.02 -0.37 16 50 H 0.26 15.38 8.31 -92.72 -0.77 14.61 16 51 H 0.07 1.99 8.02 -2.39 -0.02 1.97 16 52 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.67 382.50 0.03 -64.64 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.83 Total: 12.48 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 4.52 Total: -28.03 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -7.35 Total: -96.16 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.67 0.03 -64.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106853268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.550 kcal (2) G-P(sol) polarization free energy of solvation -64.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds