Wall clock time and date at job start Fri Apr 10 2020 17:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86808 * 119.99800 * 2 1 4 4 H 1.48499 * 109.46875 * 270.00164 * 3 2 1 5 5 H 1.48496 * 109.47049 * 30.00126 * 3 2 1 6 6 H 1.48502 * 109.46865 * 150.00034 * 3 2 1 7 7 C 1.40043 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00040 * 193.44159 * 7 2 1 9 9 C 1.41510 * 119.99930 * 13.43431 * 7 2 1 10 10 C 1.41032 * 121.02781 * 24.96078 * 9 7 2 11 11 C 1.37824 * 118.85405 * 180.26713 * 10 9 7 12 12 Br 1.89106 * 119.50704 * 179.72808 * 11 10 9 13 13 N 1.32107 * 120.98522 * 359.70762 * 11 10 9 14 14 C 1.32021 * 122.30578 * 0.02562 * 13 11 10 15 15 C 1.37710 * 121.02448 * 359.97438 * 14 13 11 16 16 C 1.50703 * 120.56241 * 179.97438 * 15 14 13 17 17 F 1.39908 * 109.46810 * 0.02562 * 16 15 14 18 18 F 1.39897 * 109.47560 * 240.00174 * 16 15 14 19 19 F 1.39903 * 109.47384 * 119.99626 * 16 15 14 20 20 H 0.96997 * 120.00258 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.56890 * 0.02562 * 10 9 7 22 22 H 1.08006 * 119.48625 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4387 2.6527 0.7000 6 1 3.5389 1.4403 0.7001 7 6 2.0076 -1.2128 -0.0005 8 1 3.0654 -1.2256 0.2169 9 6 1.3291 -2.4214 -0.2858 10 6 0.1473 -2.4275 -1.0554 11 6 -0.4801 -3.6298 -1.3014 12 35 -2.0701 -3.6585 -2.3246 13 7 0.0130 -4.7625 -0.8334 14 6 1.1187 -4.8065 -0.1133 15 6 1.8172 -3.6580 0.1858 16 6 3.0779 -3.7203 1.0091 17 9 3.3429 -5.0494 1.3563 18 9 2.9144 -2.9581 2.1708 19 9 4.1471 -3.2114 0.2641 20 1 -0.4850 0.8400 0.0004 21 1 -0.2612 -1.5055 -1.4419 22 1 1.4810 -5.7581 0.2469 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238578111.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:56 Heat of formation + Delta-G solvation = -149.778782 kcal Electronic energy + Delta-G solvation = -16264.394272 eV Core-core repulsion = 12835.379725 eV Total energy + Delta-G solvation = -3429.014547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 294.951 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.89435 -48.44184 -48.31047 -40.49105 -36.33776 -33.75144 -32.67962 -30.84016 -28.42311 -26.43436 -23.90932 -22.76857 -19.83315 -19.26157 -19.21312 -18.61315 -17.51051 -16.55063 -16.33064 -15.34823 -15.31859 -15.02747 -14.86466 -14.76983 -14.59812 -14.54736 -14.46121 -13.63206 -13.36991 -13.05574 -12.88237 -12.11183 -11.99497 -11.84402 -11.40718 -11.28565 -10.32771 -10.26146 -9.76733 -8.94251 -6.90275 0.14419 0.58483 0.72307 1.37399 1.49143 1.52297 2.02251 2.11166 2.46371 3.15137 3.22890 3.42567 3.81409 3.86544 4.48887 4.60357 4.86694 4.97031 5.10855 5.44111 5.71862 6.08533 6.37402 6.47705 7.16204 7.98669 Molecular weight = 294.95amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.008668 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.262140 B = 3229.567543 C = 4865.919499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.041 3.959 3 Si 0.989 3.011 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.443 4.443 8 H 0.095 0.905 9 C 0.132 3.868 10 C -0.180 4.180 11 C 0.122 3.878 12 Br -0.028 7.028 13 N -0.570 5.570 14 C 0.175 3.825 15 C -0.370 4.370 16 C 0.537 3.463 17 F -0.183 7.183 18 F -0.187 7.187 19 F -0.188 7.188 20 H 0.305 0.695 21 H 0.140 0.860 22 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -0.346 -1.661 1.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.113 0.887 9 C 0.123 3.877 10 C -0.205 4.205 11 C -0.084 4.084 12 Br 0.056 6.944 13 N -0.286 5.286 14 C 0.015 3.985 15 C -0.377 4.377 16 C 0.482 3.518 17 F -0.165 7.165 18 F -0.168 7.168 19 F -0.170 7.170 20 H 0.116 0.884 21 H 0.158 0.842 22 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.349 -0.987 -2.235 2.791 hybrid contribution 1.112 1.253 0.608 1.782 sum -0.236 0.266 -1.627 1.666 Atomic orbital electron populations 1.69709 1.09123 1.32500 1.29386 1.26950 0.95660 1.05014 0.90476 0.85069 0.79132 0.74803 0.80261 1.17800 1.18390 1.18054 1.20195 0.97664 0.90944 1.38332 0.88721 1.17703 0.90748 0.92020 0.87216 1.22174 0.98767 0.96944 1.02617 1.22574 0.94688 0.91836 0.99266 1.96497 1.29788 1.99151 1.69013 1.67331 1.15268 1.27898 1.18134 1.22208 0.88615 0.97018 0.90630 1.20817 1.02825 0.97871 1.16237 1.17782 0.83828 0.72444 0.77748 1.93077 1.94870 1.35687 1.92820 1.93139 1.95698 1.76523 1.51453 1.93115 1.59563 1.87370 1.76906 0.88364 0.84238 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.41 10.80 21.84 0.24 -35.17 14 2 C 0.04 1.78 5.26 85.29 0.45 2.23 14 3 Si 0.99 33.18 29.58 68.60 2.03 35.21 14 4 H -0.25 -8.20 7.11 99.48 0.71 -7.50 14 5 H -0.26 -8.20 7.11 99.48 0.71 -7.49 14 6 H -0.26 -8.65 7.11 99.48 0.71 -7.94 14 7 C -0.44 -21.11 7.97 23.51 0.19 -20.92 14 8 H 0.09 4.43 6.21 -2.91 -0.02 4.41 14 9 C 0.13 6.49 5.59 -21.10 -0.12 6.38 14 10 C -0.18 -8.71 8.50 22.86 0.19 -8.51 14 11 C 0.12 5.60 7.16 84.55 0.61 6.20 14 12 Br -0.03 -1.07 33.86 -20.37 -0.69 -1.76 14 13 N -0.57 -26.00 10.30 -191.30 -1.97 -27.97 14 14 C 0.18 7.56 10.58 84.54 0.89 8.46 14 15 C -0.37 -16.87 5.43 -19.30 -0.10 -16.97 14 16 C 0.54 22.23 2.83 71.24 0.20 22.43 14 17 F -0.18 -6.71 16.01 44.97 0.72 -5.99 14 18 F -0.19 -8.00 16.57 44.97 0.75 -7.26 14 19 F -0.19 -7.75 15.84 44.97 0.71 -7.04 14 20 H 0.30 12.15 8.29 -92.71 -0.77 11.38 14 21 H 0.14 6.82 6.16 -2.91 -0.02 6.80 14 22 H 0.17 6.14 7.16 -2.91 -0.02 6.12 14 Total: -1.00 -50.30 235.42 5.39 -44.91 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.30 Total: 5.78 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 2.31 Total: -0.71 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -1.73 Total: -63.15 kcal Atomic # 9 Polarization: -22.46 SS G_CDS: 2.18 Total: -20.29 kcal Atomic # 14 Polarization: 33.18 SS G_CDS: 2.03 Total: 35.21 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -0.69 Total: -1.76 kcal Total: -50.30 5.39 -44.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238578111.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.867 kcal (2) G-P(sol) polarization free energy of solvation -50.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds