Wall clock time and date at job start Fri Apr 10 2020 17:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86791 * 120.00381 * 2 1 4 4 H 1.48506 * 109.46948 * 266.92230 * 3 2 1 5 5 H 1.48502 * 109.47318 * 26.92385 * 3 2 1 6 6 H 1.48499 * 109.47147 * 146.92503 * 3 2 1 7 7 C 1.39940 * 119.99245 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00718 * 342.30881 * 7 2 1 9 9 C 1.41379 * 119.99747 * 162.30809 * 7 2 1 10 10 C 1.41124 * 120.64517 * 328.05587 * 9 7 2 11 11 C 1.36954 * 118.32747 * 180.27187 * 10 9 7 12 12 C 1.38759 * 119.54490 * 359.97438 * 11 10 9 13 13 Br 1.89091 * 119.34601 * 179.97438 * 12 11 10 14 14 N 1.32167 * 121.30766 * 0.02562 * 12 11 10 15 15 C 1.31539 * 121.82777 * 359.97438 * 14 12 11 16 16 C 1.50693 * 119.85790 * 180.02562 * 15 14 12 17 17 F 1.39898 * 109.47373 * 240.91102 * 16 15 14 18 18 F 1.39904 * 109.47222 * 0.91001 * 16 15 14 19 19 F 1.39898 * 109.47216 * 120.90892 * 16 15 14 20 20 H 0.97001 * 119.99470 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.83710 * 0.25151 * 10 9 7 22 22 H 1.07988 * 120.22808 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.5550 2.0087 -1.3981 5 1 1.4089 2.6705 0.6340 6 1 3.5059 1.4596 0.7641 7 6 2.0079 -1.2120 0.0005 8 1 1.5062 -2.1251 0.2852 9 6 3.3715 -1.2412 -0.3715 10 6 3.8752 -0.3360 -1.3298 11 6 5.2026 -0.4100 -1.6591 12 6 6.0070 -1.3615 -1.0484 13 35 7.8387 -1.4591 -1.5077 14 7 5.5181 -2.2015 -0.1527 15 6 4.2518 -2.1771 0.2026 16 6 3.7417 -3.1555 1.2289 17 9 2.7468 -3.9554 0.6566 18 9 4.7959 -3.9644 1.6666 19 9 3.2088 -2.4552 2.3164 20 1 -0.4849 0.8401 -0.0004 21 1 3.2302 0.3966 -1.7922 22 1 5.6204 0.2681 -2.3883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238580665.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:59 Heat of formation + Delta-G solvation = -144.373086 kcal Electronic energy + Delta-G solvation = -16356.275516 eV Core-core repulsion = 12927.495377 eV Total energy + Delta-G solvation = -3428.780139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 294.951 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.96436 -48.48297 -48.43692 -40.78057 -36.24015 -33.70306 -33.54899 -31.24152 -28.43933 -26.31823 -24.02354 -23.06645 -19.78801 -19.34311 -19.30306 -19.27314 -17.67184 -16.72880 -16.17406 -15.56168 -15.38185 -15.29151 -14.97693 -14.87977 -14.66850 -14.64215 -14.55729 -14.11393 -13.65510 -13.20323 -12.83694 -12.29205 -11.94729 -11.81116 -11.39060 -11.26216 -10.71104 -10.43193 -9.85199 -9.20537 -6.92543 0.04638 0.39248 0.66630 1.20464 1.34507 1.43443 1.85149 1.97177 2.27092 2.87183 2.93039 3.29040 3.67869 4.06784 4.22665 4.34749 4.50972 4.81339 4.99696 5.30339 5.46963 5.90198 6.06816 6.32808 6.88635 7.82885 Molecular weight = 294.95amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.008340 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.278102 B = 3356.529007 C = 4566.580042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.055 3.945 3 Si 0.955 3.045 4 H -0.227 1.227 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.427 4.427 8 H 0.083 0.917 9 C 0.066 3.934 10 C -0.198 4.198 11 C -0.061 4.061 12 C -0.018 4.018 13 Br -0.020 7.020 14 N -0.404 5.404 15 C -0.108 4.108 16 C 0.540 3.460 17 F -0.184 7.184 18 F -0.179 7.179 19 F -0.179 7.179 20 H 0.310 0.690 21 H 0.147 0.853 22 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.956 3.272 -3.200 9.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.168 4.168 3 Si 0.775 3.225 4 H -0.151 1.151 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.453 4.453 8 H 0.101 0.899 9 C 0.060 3.940 10 C -0.223 4.223 11 C -0.083 4.083 12 C -0.238 4.238 13 Br 0.062 6.938 14 N -0.113 5.113 15 C -0.251 4.251 16 C 0.485 3.515 17 F -0.166 7.166 18 F -0.161 7.161 19 F -0.160 7.160 20 H 0.122 0.878 21 H 0.164 0.836 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.827 2.669 -2.941 9.680 hybrid contribution -1.154 0.547 0.157 1.287 sum 7.674 3.216 -2.784 8.774 Atomic orbital electron populations 1.69640 1.09292 1.33333 1.28899 1.26969 0.95492 1.04362 0.89963 0.85680 0.79278 0.75783 0.81713 1.15114 1.18762 1.18516 1.19843 0.92749 0.97130 1.35574 0.89936 1.18266 0.93309 0.91638 0.90817 1.21578 0.96310 1.03870 1.00572 1.21616 0.93000 0.95910 0.97742 1.22064 0.93098 1.02636 1.05980 1.96492 1.07052 1.98744 1.91487 1.66201 1.13666 1.21222 1.10202 1.20566 0.90915 1.06668 1.06969 1.17618 0.74573 0.79085 0.80178 1.93129 1.63222 1.75385 1.84865 1.93118 1.57446 1.74946 1.90561 1.93148 1.86950 1.79128 1.56794 0.87816 0.83552 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.46 13.93 21.83 0.30 -36.15 14 2 C 0.06 2.50 5.42 85.25 0.46 2.97 14 3 Si 0.96 34.87 24.78 68.60 1.70 36.57 14 4 H -0.23 -7.21 6.31 99.48 0.63 -6.58 14 5 H -0.26 -8.89 7.11 99.48 0.71 -8.18 14 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 14 7 C -0.43 -20.96 8.21 23.46 0.19 -20.77 14 8 H 0.08 4.42 6.47 -2.91 -0.02 4.40 14 9 C 0.07 3.06 5.03 -21.19 -0.11 2.96 14 10 C -0.20 -7.99 7.41 22.68 0.17 -7.82 14 11 C -0.06 -2.23 9.75 22.09 0.22 -2.01 14 12 C -0.02 -0.74 7.17 84.77 0.61 -0.13 14 13 Br -0.02 -0.65 33.85 -20.37 -0.69 -1.34 14 14 N -0.40 -18.39 9.69 -176.67 -1.71 -20.10 14 15 C -0.11 -5.09 6.33 43.21 0.27 -4.82 14 16 C 0.54 24.69 2.85 71.23 0.20 24.89 14 17 F -0.18 -8.43 15.74 44.97 0.71 -7.72 14 18 F -0.18 -7.81 16.86 44.97 0.76 -7.06 14 19 F -0.18 -8.18 16.51 44.97 0.74 -7.44 14 20 H 0.31 12.46 8.30 -92.71 -0.77 11.69 14 21 H 0.15 5.37 4.82 -2.91 -0.01 5.35 14 22 H 0.16 4.57 8.06 -2.92 -0.02 4.55 14 Total: -1.00 -51.37 231.70 5.04 -46.32 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.22 Total: 1.65 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 2.02 Total: -4.74 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -1.41 Total: -56.26 kcal Atomic # 9 Polarization: -24.43 SS G_CDS: 2.21 Total: -22.22 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 1.70 Total: 36.57 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.69 Total: -1.34 kcal Total: -51.37 5.04 -46.32 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238580665.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.050 kcal (2) G-P(sol) polarization free energy of solvation -51.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds