Wall clock time and date at job start Fri Apr 10 2020 17:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00173 * 2 1 4 4 C 1.50702 * 119.99870 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47115 * 94.99246 * 4 2 1 6 6 H 1.08994 * 109.47189 * 305.00393 * 5 4 2 7 7 C 1.53009 * 109.46806 * 65.00163 * 5 4 2 8 8 C 1.50699 * 109.46971 * 184.99719 * 5 4 2 9 9 O 1.21277 * 120.00402 * 352.51020 * 8 5 4 10 10 N 1.34781 * 119.99466 * 172.50365 * 8 5 4 11 11 C 1.46956 * 120.59907 * 5.12774 * 10 8 5 12 12 C 1.53367 * 108.63797 * 235.20630 * 11 10 8 13 13 H 1.09000 * 109.61035 * 70.31752 * 12 11 10 14 14 C 1.53000 * 109.61217 * 190.83336 * 12 11 10 15 15 N 1.46968 * 108.63380 * 310.57312 * 12 11 10 16 16 C 1.36935 * 120.59428 * 235.25173 * 15 12 11 17 17 H 1.07995 * 120.00252 * 53.76593 * 16 15 12 18 18 C 1.38813 * 119.99809 * 233.76428 * 16 15 12 19 19 N 1.31623 * 120.00000 * 22.93026 * 18 16 15 20 20 Si 1.86805 * 120.00136 * 202.93066 * 18 16 15 21 21 H 1.48499 * 109.46660 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47211 * 119.99838 * 20 18 16 23 23 H 1.48499 * 109.46823 * 239.99816 * 20 18 16 24 24 C 1.46970 * 118.81054 * 55.22521 * 15 12 11 25 25 H 1.08994 * 109.60754 * 64.52129 * 24 15 12 26 26 C 1.52998 * 109.61012 * 185.03059 * 24 15 12 27 27 C 1.46968 * 120.59220 * 185.10601 * 10 8 5 28 28 H 1.08001 * 119.99777 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00456 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47489 * 270.00741 * 3 2 1 31 31 H 1.09008 * 109.47073 * 30.00652 * 3 2 1 32 32 H 1.09003 * 109.47042 * 150.00224 * 3 2 1 33 33 H 1.09000 * 109.46737 * 334.99691 * 4 2 1 34 34 H 1.08994 * 109.47273 * 214.99820 * 4 2 1 35 35 H 1.08996 * 109.46742 * 171.32065 * 7 5 4 36 36 H 1.08994 * 109.47061 * 291.32536 * 7 5 4 37 37 H 1.09006 * 109.47049 * 51.31998 * 7 5 4 38 38 H 1.09001 * 109.61163 * 115.45565 * 11 10 8 39 39 H 1.09003 * 109.60857 * 354.94754 * 11 10 8 40 40 H 1.08994 * 109.47468 * 59.99506 * 14 12 11 41 41 H 1.09002 * 109.47331 * 179.97438 * 14 12 11 42 42 H 1.09009 * 109.46674 * 299.99513 * 14 12 11 43 43 H 0.96999 * 119.99590 * 184.89021 * 19 18 16 44 44 H 1.08999 * 109.47189 * 49.05701 * 26 24 15 45 45 H 1.08996 * 109.47525 * 169.06110 * 26 24 15 46 46 H 1.09005 * 109.47098 * 289.06655 * 26 24 15 47 47 H 1.09003 * 109.60997 * 5.04711 * 27 10 8 48 48 H 1.08997 * 109.74848 * 244.62892 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4378 6 1 1.5243 -1.7025 -2.0480 7 6 3.4044 -0.6516 -2.0049 8 6 3.0715 -3.0457 -1.4509 9 8 3.3486 -3.5956 -0.4061 10 7 3.3396 -3.6529 -2.6239 11 6 3.1134 -2.9543 -3.8968 12 6 2.1903 -3.8132 -4.7700 13 1 1.1851 -3.8144 -4.3487 14 6 2.1547 -3.2472 -6.1910 15 7 2.7147 -5.1858 -4.7990 16 6 2.9880 -5.8025 -5.9907 17 1 3.6365 -5.3244 -6.7098 18 6 2.4316 -7.0422 -6.2743 19 7 1.3315 -7.4255 -5.6616 20 14 3.2441 -8.1665 -7.5255 21 1 4.4586 -7.5068 -8.0685 22 1 3.6249 -9.4433 -6.8698 23 1 2.2942 -8.4427 -8.6330 24 6 2.9410 -5.8846 -3.5260 25 1 1.9892 -6.0333 -3.0161 26 6 3.6011 -7.2386 -3.7937 27 6 3.8640 -5.0256 -2.6529 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 2.2451 1.6198 -1.0276 31 1 1.4745 2.0647 0.5140 32 1 3.0160 1.1746 0.5138 33 1 1.4385 -2.0856 0.4334 34 1 2.9742 -1.1992 0.5888 35 1 3.7824 -0.9994 -2.9663 36 1 2.8904 0.3001 -2.1393 37 1 4.2365 -0.5206 -1.3131 38 1 4.0652 -2.8055 -4.4067 39 1 2.6431 -1.9896 -3.7061 40 1 3.1606 -3.2550 -6.6107 41 1 1.4985 -3.8594 -6.8097 42 1 1.7797 -2.2239 -6.1652 43 1 0.9820 -8.3187 -5.8063 44 1 4.4515 -7.1024 -4.4617 45 1 3.9436 -7.6683 -2.8524 46 1 2.8784 -7.9097 -4.2579 47 1 3.8895 -5.4289 -1.6405 48 1 4.8700 -5.0268 -3.0724 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585126564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:22 Heat of formation + Delta-G solvation = 1.066360 kcal Electronic energy + Delta-G solvation = -25538.513522 eV Core-core repulsion = 22208.499507 eV Total energy + Delta-G solvation = -3330.014015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03730 -37.62752 -36.57324 -34.35258 -33.03286 -32.52698 -31.16369 -27.98064 -27.78821 -26.67609 -25.98685 -25.83835 -24.10970 -22.33309 -20.42338 -19.61342 -18.63114 -18.37625 -16.87686 -16.04233 -15.68180 -15.26825 -14.99094 -14.57999 -14.49751 -14.20503 -13.99837 -13.78223 -13.44187 -13.08615 -12.99268 -12.67239 -12.26483 -12.07362 -11.90116 -11.69035 -11.55706 -11.48409 -11.37030 -11.21894 -11.02860 -10.91221 -10.83353 -10.76593 -10.54265 -10.48455 -10.33739 -10.05456 -9.91275 -9.71006 -9.34569 -8.97605 -8.35737 -7.98420 -6.46208 -5.76650 -3.60938 2.13725 3.01907 3.28263 3.39319 3.41040 3.49612 4.39836 4.60395 4.80374 4.91176 5.06304 5.10797 5.13571 5.22933 5.35014 5.42670 5.50100 5.64712 5.66107 5.70906 5.75959 5.79971 5.87419 5.92664 5.95863 6.06160 6.14124 6.18871 6.22004 6.29040 6.30996 6.38561 6.47732 6.56479 6.58159 6.74352 6.81561 6.85373 6.99643 7.05790 7.20156 7.40617 7.61428 7.80255 7.95428 8.55548 8.59963 9.12940 9.66463 10.44074 11.10065 Molecular weight = 294.20amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.004071 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.959283 B = 6875.694564 C = 7226.440587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.120 4.120 4 C -0.065 4.065 5 C -0.102 4.102 6 H 0.095 0.905 7 C -0.153 4.153 8 C 0.513 3.487 9 O -0.558 6.558 10 N -0.596 5.596 11 C 0.087 3.913 12 C 0.154 3.846 13 H 0.028 0.972 14 C -0.127 4.127 15 N -0.575 5.575 16 C -0.268 4.268 17 H 0.054 0.946 18 C 0.041 3.959 19 N -0.868 5.868 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.288 1.288 24 C 0.182 3.818 25 H 0.030 0.970 26 C -0.140 4.140 27 C 0.094 3.906 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.036 0.964 43 H 0.254 0.746 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 13.926 6.371 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.121 4.121 3 C -0.177 4.177 4 C -0.103 4.103 5 C -0.124 4.124 6 H 0.113 0.887 7 C -0.210 4.210 8 C 0.301 3.699 9 O -0.437 6.437 10 N -0.326 5.326 11 C -0.037 4.037 12 C 0.047 3.953 13 H 0.046 0.954 14 C -0.185 4.185 15 N -0.300 5.300 16 C -0.397 4.397 17 H 0.071 0.929 18 C -0.162 4.162 19 N -0.507 5.507 20 Si 0.705 3.295 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.215 1.215 24 C 0.076 3.924 25 H 0.048 0.952 26 C -0.198 4.198 27 C -0.030 4.030 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.498 13.496 6.843 15.206 hybrid contribution 0.234 -0.802 -0.685 1.080 sum 1.732 12.694 6.158 14.215 Atomic orbital electron populations 1.23704 0.95265 1.01806 1.02764 1.21761 0.95364 0.95706 0.99291 1.20975 1.00140 0.94458 1.02098 1.20499 1.00596 0.94085 0.95101 1.21228 0.99934 0.92893 0.98324 0.88730 1.22099 0.98862 0.98450 1.01626 1.20561 0.78686 0.87236 0.83413 1.90630 1.54358 1.67001 1.31738 1.48002 1.63419 1.15571 1.05654 1.22667 1.00791 0.95700 0.84560 1.20884 0.93711 0.86990 0.93696 0.95412 1.21652 1.02123 0.97894 0.96855 1.43968 1.74364 1.10277 1.01390 1.18658 1.23347 1.02326 0.95385 0.92885 1.25504 0.93663 1.00758 0.96286 1.70231 1.17330 1.18296 1.44865 0.86687 0.79780 0.81394 0.81657 1.19714 1.21052 1.21486 1.20602 0.94304 0.90940 0.86593 0.95201 1.21936 1.01934 0.97236 0.98734 1.22456 0.98024 0.81295 1.01182 0.88644 0.88431 0.91190 0.92190 0.91843 0.90721 0.90644 0.91267 0.91305 0.92210 0.91718 0.90298 0.92811 0.91385 0.94515 0.93601 0.92540 0.95625 0.89741 0.90441 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 13.89 29.01 0.40 -1.60 16 2 C -0.12 -1.27 4.95 -101.07 -0.50 -1.77 16 3 C -0.12 -1.01 9.07 36.00 0.33 -0.68 16 4 C -0.07 -0.82 4.17 -27.88 -0.12 -0.94 16 5 C -0.10 -1.37 1.88 -91.77 -0.17 -1.54 16 6 H 0.09 1.25 7.57 -51.93 -0.39 0.85 16 7 C -0.15 -1.67 7.92 37.16 0.29 -1.38 16 8 C 0.51 9.02 7.02 -10.98 -0.08 8.95 16 9 O -0.56 -11.49 15.43 5.56 0.09 -11.41 16 10 N -0.60 -10.85 2.95 -172.49 -0.51 -11.36 16 11 C 0.09 1.44 4.53 -3.60 -0.02 1.42 16 12 C 0.15 3.07 3.65 -67.48 -0.25 2.82 16 13 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 14 C -0.13 -2.29 8.18 37.16 0.30 -1.99 16 15 N -0.58 -13.41 2.75 -157.03 -0.43 -13.84 16 16 C -0.27 -6.72 6.55 -15.06 -0.10 -6.82 16 17 H 0.05 1.35 7.18 -52.49 -0.38 0.98 16 18 C 0.04 1.06 3.19 -17.43 -0.06 1.00 16 19 N -0.87 -23.81 11.92 55.49 0.66 -23.15 16 20 Si 0.88 20.20 29.62 -169.99 -5.03 15.17 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 C 0.18 4.12 3.29 -67.49 -0.22 3.90 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 C -0.14 -3.13 7.82 37.16 0.29 -2.84 16 27 C 0.09 1.88 5.88 -3.60 -0.02 1.86 16 28 H 0.10 0.82 8.04 -52.49 -0.42 0.40 16 29 H 0.10 1.02 7.99 -52.48 -0.42 0.60 16 30 H 0.07 0.53 6.50 -51.93 -0.34 0.20 16 31 H 0.06 0.44 8.06 -51.92 -0.42 0.03 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.07 1.05 7.91 -51.93 -0.41 0.64 16 34 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.07 0.77 5.38 -51.93 -0.28 0.49 16 36 H 0.07 0.62 5.72 -51.93 -0.30 0.33 16 37 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 39 H 0.08 1.08 4.52 -51.93 -0.23 0.84 16 40 H 0.05 0.96 7.44 -51.93 -0.39 0.58 16 41 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 42 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.25 6.75 8.32 -40.82 -0.34 6.41 16 44 H 0.06 1.26 7.39 -51.93 -0.38 0.88 16 45 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 46 H 0.08 2.09 5.24 -51.93 -0.27 1.82 16 47 H 0.08 1.57 7.02 -51.93 -0.36 1.21 16 48 H 0.06 1.18 8.11 -51.93 -0.42 0.75 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -28.83 361.00 -8.02 -36.85 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.33 Total: 1.90 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.09 Total: 0.40 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.28 Total: -48.35 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.83 -8.02 -36.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585126564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.917 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds